morexGenes - Barley RNA-seq Database

Contig contig_46493

Source Contig contig_46493

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_46493 (5562 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_46493

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62372	1	1868 bp	MLOC_62372.1	Available	Available	LOC_Os11g30310.1, FRAME:+1, EVALUE:0.0, 13111.m02933 protein reticuline oxidase-like protein precursor, putative

CDS Structure of MLOC_62372

Contig Sequence (5562 bp)

>contig_46493 5562 assembly3_WGSMorex_rbca.fasta
CTCCCCCCCCCCCCCCCCCTAAAATTTCTGAAAATCACTTATCGGCGGTTTCGCGTTTTC
ATTTTGTCTCAATTGTCCCACCACAACCACATGGCATTACACCAAAGAGCACGCTTGCCA
TTCATGAATTTATTCAGCGTGTTCTTTGAGATGCCAGTGGTGCTCGCCGGTTTCCTTATG
GACAATGGGCATGCATTTCATTGGGGCGTGTGAACTAGTTGATATATTTTTAAGAGCCCG
TAGATTCCATTCAACTGATAAAAAGTCCACCATTCTTGAAGGTTACACCACATGACCTTT
GGACTTGGATTTGCCAGTCATCTTTGCCTTTTGAGCCCAGGCTCATCTGCATCCCTGCTG
TGTAAAAAAATCAAAACAAAATTTAAAGATAATATGATGCACGAGGTTCGTTTCAATTTT
TGTATAATTTGAAGATCTGTGCAACTTTTGGTAAAAAAGACAAATTCAGGATCTCTAAAA
AAGTTTACTATACATGCGATGTCTTGACCCGATTTGTTTTCTTACCGAGAGCTGCTCAGA
TGTTTAAATGATACAAAAATTAGGTAGAGCGAACCCCACACATCAAATTATCTATCATTC
AAAAAACTTTTGGATTTTTTTTGATTTTTTTAGTATTTGTTTTGAATTTTTTATTAAACA
AGTGTAGATGAACCTCGACATCAAAACGTTGCACTCGGTATCGATGCACTATAATGGTTT
TCGTTGTTTGCAAGGTTGTGTGCGGGCAAAGTCCTCAGTCCAACTATATCATCAATGGTT
ATAATTACAATATAGGATACTTTGTCCTGCATGGACGACTTTCGCCAAGACCATCCCTAA
ACTAAGGGATAACAAAAAACATTCACTTTGCCAAAAGATAAGAAAATGCTAGCAAGGATG
TTGAGAAGGCATTTGAAATGCTTTGAACCTGTTATGCAATTGTTCATGGACCTGCTAAAC
GAAGGGAGTAGTTGATTAAGTATTGTGTTGTCTGTCTTCCATTGTTTTGAGCAATCTATG
TATAGAAAAAAAACTCTTAAATTCAGCTGAATGATTTCTATCTCCTTTAAACCGTTTCTC
CCGTTTGACACGCACCCTGTTGGGCCTAGCCACCGTTCTCCCTAGTTTTACCTTATCTCT
TGCTGAAACCTTCTCGCCCACATCTTCTCCCCTTCTTTCCCCTCTTGTCTCTCTCGTTCC
TCAAGCTCCCACGGCAAAGAAGAGATGCCCCCCCCATGTCAATCCCCGTTGCTACAAATC
GAAGATTGCCCTCGGAGCACATCCCTGTGCATCCCGCCGTCGGAGCCCACAATTGTCGTG
TCCCACCACAAACAACCGTAGGTCCCCACAACTCCCATAAGCACTGCTGCAGCGTCCATC
GCCATGGCCACAGCCACCGCGCTAAGAGCTGGTGGTGCGAAGGCGCCCTTGTTGCAACCT
ATGTTGAGGAGTCGACCCTAAACCCTTAGTACTGCGAGGGGGCACCACCACGCCATGCTG
CAAGGTGCACGTCTCTCTCTACCGTGTGGTCGCAGTAGCGATGCTGTTGCAAACCGGAGG
GGGCGACGACGACCGTCGTTGGAGCAAGGGTGGTAGCTACATCGTCGGTGTTGCAATGAA
CACCGTCGGGCCACCGGAAGCATAGCCGGTGCTGCACTGGAGCTTGGCCGGAGTTGCAAC
GGAGCGTCACCGGAGCCGTCGGTGCTGTGTTGGAGCTTCACCGAGGCTGCAATGGAGCTT
GACCAGAGTTGCAGCGGAGCTTTGCTGGAGCCATCAATGTTGCGTTGGAGCTTGGCCGGA
GTTGCAATGAAGCTTCGCCAGAGCCGTAGGTGGTGTTGCGTTCGAGCTCTGCCAAGGCTG
TATCGGCGGTGGGTTGAAGCTGCTGCTGCGTTGTCGCCGTGATCTCGTATGCTTGCTAGG
CGGATGATTTCTTAAGAAAAAAAGACCTGAAAGCACATATTTGATGCCTGCGGTTGAATG
ATCTCCTCCTATCCCTGTCCACCAACATGTCCGGTCTGGACATATGTGCAAACATTGATG
AGGTCCGTTTTGGCGATTCACATTGGAGTTGCCCTTCGCTTCAAATCATAGAAAGTCTTG
ACTCCTCTTCGCACAAAACGTTCATGTTTTGTGTGCCTAGTTGATTAATTAGTGGAGTGA
TTCGTTAACTAGTTGACATTGATCTCACAAATGTACTGTAGGAATCAAATCAGTGGAGTA
GCTTAACTACTACTAGTACAACTAGTTCTTCGTTTAGCATCAACCACGTCTCGGGATGAA
GCCCGTCATTAACACTCACGGTTGACGTGATCAACTTACATTGCGAACGTGCGCGCGGCG
AGGAGACAAAGATGAGGTCAAGTCCTCAGGTCAACCATACTAAGCATCATTTAGCAAAGT
CAAATCATCATCAAACTCGTTATAAGCAGCATTAGCCAGCTCCATAACCATAATAAGCTC
GGCTGCCATTAGCAAGCAGTCTCCACTCCACTTAGTCCACTGCACCGATCGAGCAAATCA
TCCATGGCTGTCTCGACGACGGCAGTGCTGTCACTGTTGCTCGTCGCGTGCTTCTGCTGC
GACGTCTTCCTCCCTTCGCTAGCCTCCTCCTCCGAGGAGAACTTCGTTGCATGCCTGTCG
GAGAAGATACCGGGCGAGCTCCTGTACACGCAGAGCTCCAGCGGCTTCTTGTCCGTGCTG
ACGGCCTCCGTCCAGAACGCCAGGTTCGCGACCAACGCCACGGTGCGGCCCGCGTGCATC
GTCACGGCGTCCGACGTCGCCCACGTCCAGGACGCGGTCTGGTGCGGCCGCCGGCACGGC
GTGCGCCTCCGCGTGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACCGGTCCGTG
CGCGCCGAGGTGTTCGCCGTGCTGGACCTCGCGAGGCTGCGCGACGTGCGCGTCAGTCCC
GGGGAGGCCTCCGCGTGGGTGGACTCCGGCGCTACGCTCGGGGAGCTCTACTACGCCGTC
GGCATGGCCAGCCCCACGCTGGCGTTCCCGGGCGGCGCGTGCCCGACGGTCGGCGTCGGA
GGGTTCTTGAGCGGAGGAGGCATCGGGCTGATGATGCGCAAGTTCGGCACCGGGGCGGAC
AACGTGCTCGACGCCAAGATCGTCAATGCCGACGGCGTCCTCCTCGACAGGGCCGCAATG
GGGGAGGATCTCTTCTGGGCCATCCGGGGCGGAGGCGGCGAGAGCTTCGGCGTGGTGGTG
TCGTGGAAGCTGAAGCTCTCCGTGGTCCCTCGGACGGTGACGGTGGTGAACACCGACAGG
ACCTTCGACGAGAGCACCGCCGCCGTCCTCGCCAAATGGGAGACGCTGGCGATCAGGCCG
TTCCTCCCGGACCTGACGATCCGCGCCGTGGTGCAGGGCAACAACACCGTGTTCCAGACC
CTCTTCCTGGGCAGCTGCTCGCAGCTCATCTCCAAGATGGACGCCTTCTTCCCGGAGCTC
GGCACGACGGCGGCCGACTGCAGGGAGATGAGCTGGGTGCGCGCCATGGCGTTCATCGTC
CTGAGCAGCAAGGACGTCAACGTGCCACTGGAGGGGATGCTGAGCCGGACCAACAACCTG
AGCGGCTACGTGAAGAACAAGTCGGACTACGTGCGGTGCGCCGTCGGCAAGGCGGGGTGG
GAGCGCGTCTACCGGGAGCACCTGTCGCGGAACGGCGCGCTGATGATGATCATGGAGCCG
CACGGCGGCGTGGTCGGCAGCGTCATCGCGGACTCCGCCACGCCGTACCCGCACCGGAGG
GGCGTGCTCTACAACATCCAGTACGTCACCTACTGGTGCTGCGCGGCGGACGGCGGCGCG
GCGGAGGCGGCCGCCGGGTTGATCAACGGCCTGTACGGGTTCATGGAGCCGCTGGTGAGC
AGCAACCCGAGGGAGGCCTTCGTCAACTACCGCGACCTGGACATCGGGCAGAACGCGGTG
GGCGACGACGGCGTGACGACGTACGAGAGCGGGAGGGTGTGGGGGGAGAAGTACTTCATG
GGGAACTTCCGGCGGCTGGCGACGGTGAAGGGGAAGGTGGATCCCGGCGACTACTTCAGG
AACGAGCAGAGCATCCCGCCGCTCCTAGCCGTCTAGCTAGCTAGGCTCTGCAACGAGTGA
GTGAACTTTAAGAAAAAAGTGGTAGCGAGTGAAGGCTGAAGAGTGCGGATTGATCGTGTA
CGCCATCCAACGTGCATGCATGAATGCGTGCATGGGCGTCACATTGTGTTTGTCTTGAAA
AGGAATAAAGATATGTAAGTGGACCAAGAAGGTTTTAATATGAGTCCATTTTCTCCAGCC
GTGTTTTCTCCTCCTGTGTTGCAAACGGGACCGAGCCTTTTTTATAAAGCGTGTTGTGGC
GAGGTTAAGGTTTGTTGTCATACGTGCACGATGACGACATCTGATGTTAGGCATTTTAGA
TCGGCTTAATGGTGACGATTGAGGGCACTCGTCGTTAGGACACGTGCATAAAGACTTAGA
ACAAGTATAATAAGGTACAGTCAACAGGCTGTAAGGATTAAAATACTATATTTTTGTTGA
GTTAGATGAGAGAGAAGATGAAAGAGAAGGGAAGCGGGCTCTTCGTGAAGAGCCAGCTCT
AGCACNNGCTCCTAGGTGCTTTGTGAGAATGAGAGGTGGGCCATATATGATAAAAGTAGC
ATTCTTTTATAGCTAACTATTGTACAAGTTAGCTATAAGATGAGTTATAAGACTGTTTAT
AGCCAACACTTGGATATACTATTAGCCATGCTCTTACTAGTGACATCAATAAGGTCAGGA
AGGCTCCAGTATAAACAGCGCTACATGAAGTGGTCATTCGATGGTTCAGAAACTTTAGTG
TATAATTTATGTTTCTAATAAACTTTTATAATAGGTAAGTGTCTTTTCGAAAAAAGAATA
GAACCAACTATCAAATCTAGTATAAACTGTCCCCCATTGCTCTAGTAGAGTAGGGTCAAC
TATCTTAGGGTTTTGGCATGAAGACCATCACTACCTTGTTCTCTCTGCCACTATTAACAC
ATTTTTCTTCTTCTTTCGATAAGGTCGCTTTATCGACTCATAATGTAGCAGCAAGGAGAC
AACACATAATGAGCACACATCGATGCTCTACACGACTATGATGTACATAGACAACACAAT
GCATGTTGGGAATTAGCACACAAATGCATTTGTTGTTATCTGAAAACTGCAGGGAAAACA
AAGTAATCTCAGCACCACATCATGTACTAACTCAAGAATCGTTGCTTAGCACGGAAGAAA
CATATGCAACAATATATATGGAGGAGAAAATATTACTCAGCAGTCAAGGCGCTCGTGAGA
CAAGTGTCTTGTGACAGGAGTAACTTTCTGGACAACAATAATCATCAACAACAGAGATAC
CATATTTTTACGTGGAAAGCCCCTCAACTTGAGAGGAAAAACCACAGGCCGAAGCCACCC
AAATCCTCTTTCACTATTATCAAATGTGGGATACAACAAGTTTCTTCTTTAGATAGCACT
AGAGGATCCCATACATCACGCTTTCTAAATCTTGGATGAACA