| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
 |
Predicted Genes from contig_464906
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_62366 |
1 |
1343 bp |
MLOC_62366.1 |
Available |
Available |
LOC_Os09g24850.1, FRAME:+3, EVALUE:6e-22, 13109.m02367 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_62365 |
1 |
456 bp |
MLOC_62365.1 |
Available |
Available |
LOC_Os07g09510.1, FRAME:+1, EVALUE:1e-21, 13107.m00958 protein retrotransposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_62366
CDS Structure of MLOC_62365
Contig Sequence (7205 bp)
>contig_464906 7205 assembly3_WGSMorex_rbca.fasta
GCATAGCAGGCTGCATCCATCGATAGTAGGCTTTTTTAATTTATTACCAACAAACTAACG
GGCCCGTCCTATGAACACAAACACGGCCCAACCAGCGAAGTCACATCCACAGTCAACAGA
GTTCAACATGGCCCCACAAGTCAGTTAACGGCCAAGACGGCAAACGCATGTTATCAACAT
TTGTGATAGTTTGAGCTAAGGGAGAGGGGAAAAGTGAGCAAAAGTTTGAAGTGAGGGGAA
AACTGAGCACAAATAAGGAATTGGGGGCACAGATGGAATAATCTCTATTTATTATCATGC
AAGACATATAGTAGCATTTCATTTAATATGATACTCAATCATCTCTTTCTTTATTTAATT
CTATGCCACCTCATTAAAATTGGTTAGTTGGCATGGTGATATACTACCTATCATACTCGT
ATTACGGGCAGCCTTACGACCAGCCTAAAAGGAATAAAGAAAGAGAGAAGGCACGCGGAC
CCGAATCCCATCGCGACGACGTTCGCCGCGACGGCCCCCCTCCCTTCTCCTGGCTAAATC
TCCCGGCGCCGGTGCAGCTCGGTCGCTCCGTCGCGCGAGAGGAAGGGGGAAAGATGAAGA
CGACCAAGGGAGGGAAAGTCATGAATCCCACCGACGCCTTCCGCAAGGAGCAGCGCAGGA
AGGAGCTTAAGCGGGTGAGTCTCCAACCCTAGGGTTTCTTGCCCTACGACTTGCACTCTT
GTGGGGGGTTATCTGAACAAGCCTCGTACGTTGCCATAGCGGTAGTAGTTCGATGCGTTA
GATTTGTTGTTTCGTGGGGCGGGTTAGGGCTATCTGAAGGTGGAAATTCAGCAATGACTT
CGTAGCTTTCTGATCGTTTTAACACGAGATCCTCTTGTGCTCATTACGGTCGATTGAGAT
GCTATCACCTAGTAAACTAGTCAGTGTTTTGGTTCAGTTGGACAATGCATTGTGACAATC
TTGCATGTAACAAGCGTATTTACATTTACATTACTAGATACTACGTCCGTTCACAAATAT
AAGATGTTCTAACTTTTCTTGAGTTGGATGTATACAGACATGTTTTAGTGTGTAGGTAGT
CCGTATTGGAATATCTGAAAGATCTTATTATATTTGTGAACAGAGGGAGTACTAGATATT
TCACTTGAAGAGCTTGTATGCAGCAGATAGACCAATCATACACTTGTACCACTATGCCAC
ATGGAATGGATAGTCATAATTGGGAAACACACCCGTAATTTTAATTGTGAACAGTCTTGA
CCTGAAGCTGCAGCTTGTTCTGCTATGTGACGTAAAATTGCCTGGTTGTCTGTTGTTTTG
ACTGGATTTAGACAATCTCAGGTAGAATATGGTGGTAGCTTGATTTTATTGCTCAGTTGG
ATGTACTTTTTTGCTATGCCACCCAACAAAGGTTAATAGCAATGCTATCGCCTAGCAGCT
TAGTTGTACTTCTTTGTTACGTCACTCCAGTTTTCTATGGTATTTTTATCTGATGGGGCA
TTTCAGGAGCAATCTAGTTTGTCAAAGTGACCAAAGCCAGTTGCTGCAATTGTTCTGTGC
TGTACTATTGCATCTTCATACGTCACATTTTTTTGGTGCACATCATTTCGACCTGGAAAT
GTATCCCTCGTCATGTATCCTGATATAGATGCACCAACACTGTAAGGCGGCAATAGTGGT
CATTACAGAGTGTTACATACTACGTTATGTCCACTTATCAGTTTTGTCGGTACTTTCTCT
TTTTAACCCCAGTTTCATATCAGACTGATGTTAAAAAATGTTTACCACTTATGATTCATT
TAATCTGTTACCAAGTAATTTAATCCATCTTTATTTCTCTACTTTATCAATTTCTTTGCT
CCGCAGAACAAAAAAGAAAGAAAGAAGGTACGGGAGGTTGGTATTTTGAAAAAGGACCCA
AATGCTATAAAGGATCAGATTGAGAAGTTGGAAAAGATGAGTAAGTATATTGAATTGTAT
CTAGGCAAATTCAGACCTTTATATCAATGTCTTAGAAACAAACCATTTTAAAAACCTATC
TTTTATGTAGAACTCAGATCATTATTTACTTGCCCTACCAGCTTTGTTTGTAGGAGGCCT
AGCATTCTCAGTTTTATGTGTCTTGAGTCGTCGCTAGTGATGATCATATCAACTAAAATA
CTACATATAGAAGAAGAGTCCGAGCACAAGCGGAAATATGGTCAAAAAGCGCAGGATCAT
GGCCACTTGCTGAAAACCAACCACAATCATCACGAAGGCGAAGCACTCAAACCAGGCACG
AGGGGTGACCATAGAGAGAGCGACGAAGATGCTAGTCCATGCTTTCAGGAACATAATACC
CATGTGGTGCCTGCATGTAAACCTCCTCATGCAACTCACCGTTAAGAAATATATTCTTGA
CATCAAGCTGAGACATAGACGAGTGACGAACAAAGGCCACATCGAGAAGTGTGCGAACAA
TGGTCATAGGGGCCGTAGGAGCAAATGTCTCATTGTAATCACGGCCACGCTCCTGTTGAA
TGCCACTGGCCATAAGATGAGCTTTGTAGCGCTCAAGAGAACCATTGCAGCAAGTCTTCA
CCTTGTAGACCCACTTACAATTGATGGGACAAAGACGGGGAGGAAGGGAAACAAGATCCC
ACGTGCTGGTGTGCTCAAGTGTAGCAATCTCCTCTGCCTCGCATGCTGCCATTCAGGATG
AACAACATCACGATAAGAAGTCAGCTCAAGATCAGCAGGGCCAGAAAAACCACATCGGTC
AATTGCGAGGTGAGGACGAGCATGAAAGCCATAAGTGGTAGGCTGAGACGAGGAAGATGC
CGCACCAAAAGTAGATGGCTCATTAGTAGACTCATCCACAACACATGACGCCGAGTATAA
TAGTGAGGTGAAGATGGAAGAATACATGGAGGAACCACTAGGATAGACTTAGGTGATGGA
GCCGGGGAAGCCATCGGTGATGAAGGTGCAGAATCATGTGACAAGTGAGGTGTGGAAACC
ATAGGAGTTGTCTGCATTGGATATGGAATAGTCACAATGGCTCAACAAGAGTGACAACTA
TGTCGGAAAAAAATGAGGAAAGAGACATCCTCCATTCAAAAGGTCGAGGAGGATGGACGC
ATGTTGAAGGGACGAGACTCATCAGCAGTCATGTCCTCAGGAATATGCACCCGACTACCG
ATAGGAACCAAACTATATGTGTAACCTAAGACACACTAAACCGATTGGGCAGTCAATTTT
TTTCCATTTGCAGGGTGCAAGAAAAACGCAACAAACACAACCAGACGAGAGAAGGGTGGA
GTCCGGACGCTGAGATACTGACTCACTAGTATGGTAAGGTAAATGAATTTATTTACTAAG
CCTACAACCTTGACATTCTAAAGGGACATCTTCGTAGACAGACCCTAGAAGACCTCGAGG
AACTAAAGACGACATACGAGAGCCACAAAGATGACATAGACGATGATGCCACTGCCGAAA
GGAGCCCGTAGCTGAGGCGACCGAAGTAGAGAGATTGGTGACGGTAGTGGTAACGAAAGG
AACATGAAGCGAGTCCAACTCCCAAAGTCCTTGAGGGTCACGACGGCGAGGGCCAGCCCT
AACTAGATTATGCATGCATTGATTCTAAATAGAACAAGAGTCAACGTTAAGAATGATATG
ACAACTAGAGTCAGTGAGCTGACCAGCTGAAAACAGGTTCGTGGTAAGTCGAGGAATATG
AGCAACATCGGGATAGAAAAGGAAGTGCTAAGAGTGCCTCAACTAGCAACATGAAGGGGA
GTACCTTCATGAATTGGATAATCAAGAGAGCTAAGGGGGGACAAGGTGGAAGAATCAGAG
GACATACGAAAGGAAGCTCCAAAATTGGAAATTCGCGGGGATATACTTGACGGTGCAGGG
GGTGGTCTCTTTATGCCAGAAGCACAGTCACAGAGCTTGCAAACCCCGAAGCTGCAAGTG
GACACTTAAATCTCATAATACCCTGCCCATTCAAGGAGACAACTGAGAGTGTCAGAGTAG
AGTACGAGTCCCAGAAGAAGAGCTGCGCATGTGCCTCTTCCTCTTGAAGCAATCAGACTC
AGGGTGACCATCCCTATTGCAATAGCCGCAACGTATACTAGCACGACCCCACCACTATGA
GTGGGTAGAAGTGGCGGATGATCAGGGGGGAGGTAGCCGGTGCAGTAGGCAGCCTGGCAG
GAGTTCCAATAGTGGACATGGTTGAGAGGGGAGGCAGCGACGACTAGTCGAGAAAACGAT
GGCAGTGGCGTGAGATTGGATCGAAGACATGAGTTGTGCGTACTAAAAAATTACCTAGGC
TCTAATACCATGTTAGGAAATATGCAGCTTGTATTTCCTGTGGCCAAGGTCTAGTATATA
TACAATGTACATATGCAGAAAACCCCTAGTACTATTGGCAAACTATAAAAGGCTACATGG
AAACGTATTATAATTCTAATATCAGTCACACTATGCTGGGCCTGTTAATTAAGTTAAAAT
GTGAAGTATGTCAATCACAATGTGCTGACATGCATATTTTTCCTTATCAAGTCATACCAT
CCATAACTACTCAAAAATTACCGCAAAAGTTTTACTTGTGACTGACATGCGTGACTTAAT
TCCCTGGAAAAAGAAGCCTTGATGAGGTGGCATGGTTTGCATGCATGGATTAACGCAAAA
TGGTAAATTATGAGTACATGCATGACTTGCTGATATCACACAACTTCGATCTAACGGTTA
TGAACAATTGAGGTGACGTGGAAGCACAGATGTGCAGAAAAATCTAGTAGTGGGGCAGCT
ATTTAGATATAGAAGATTTGCTTGCTTGGAGAAACTTTGTTGTCTGTTTGAATTTATTTG
TTTGCGAGGAGGAAATGTGTGTTAATGATTTTTGGCAAGCTTGTATTTCTGAGTGATTTT
TAATTACTATTTGGTTGATGCAGAGGCTGATGGTGCTCTGGATAAGGCTAGGAAACATAA
GAAAAGACAGCTTGAGGATACTTATAATCTTGTTGTGAAGAAAAGGAAGGTAGTCTGATT
TCTGCAGATTTGTTGGACCTTTTGTTTTGGAAGTCTCAGAATGTTTTCACTACCATTACT
GTGATTTTAATATCTTTTTAGTCCATCAAACATACAAGATCTTAACTGTTCCTTAAATTT
TCTTTGACTATGTTACGGACAAGTATTGGGGGTCGCACTACAGCTGCATGCCCAAACCTG
CAGCACAGTGCGTAACCACAATACGAACAGTTGAGCCTTAGGCAGGCACATGGCTAATCC
TTGGCAGCCAAGAAATCCAAGTTTATATCCCTAGGAAATATATCCCTATTAGGAAGTTGT
CTTTAATTTTCAAACAGTTCAGTTTTGGTTTGCTTTCCAAGTTACATGCTCTCTCTGATC
TATATAAAGGGAGGATAGTTTGCATCAGGGTTATCATATAAATAAACAGAGAAAATTGCC
CCAAACTGAGAGTTCAGAGCCTCCAGCGTCACGGCAGGGGACGAGCCCCTATGTGTGCCT
AAGATGAACCTCGCTATTCGCTCCGATCAGATCCCTGTTCCCACCTCCAACTCTATGCAC
ACGACATCTTGGTACCTTCCTTGGCCTCCCACCACCAACAGCCACCATGGGCGACCCCTT
CACCACCGAAAGCTTAGAATCAGGGCTGCCCCCTCCCTCCCTCCCTTTTCTACTTGACCT
CAAATCATTACCCGAGCTGCGGTATGATGTCACAACATTGAAGGAACAACTACCATCTGC
TAGGGTATCCATGAACCTTTTGGAGAAGGGAGAATCCAGCAAGGCACACAACAAAGATGA
AGATGAGATTGACAACACAATTACTGCTGCTGCTGCACTGGCTGCACCGTTCGCCTACCA
GGAGGAATGGTGTGCTGCTCCAAAGTTCCACAAGCTGGAATTCCCTACCTATAATGGTGA
GGGTGGCCTGTTGCTTTGGTTGAACCGTGTCGAGCGATTCTTCAAGGGCCAACAGGACAA
GGACAAGGCGTGGATGGTCTCCTATCACCTAACTGATGCTGCTGCACTATGGTACAGTCG
GTTGGAGATGATGCATCGTGAACCACCATGGCCAAAGTTTGTCAAATACCTGAATCACAG
TTTTGAGCCGATGATCAGGACTGGTCGGCTAGTGCAAATTAAACACTTGAAACAAACAGG
CTCGGTGCATGACTACAAGAAGCAATTCTGGACAAAGAAGAAGCGTTTGGTGGACGAGCG
CCCACATCTGTTCCTTAACTATATCAGGCCATTTTCCAAAATCAACTATGTGATAGAAGC
CCACAGGCCCACTCTTCTATCCCACTCTACCCTACAGGTATAGGTGGCCTCGGTACTCGA
TTTGCAAAGATGGATACCTACAAAGCTGCTAATTCTGATTAGTAAAAACCAATAAATATC
AAGTGTTACAGTATAATGTTTAATACTCTAAAGAAAGCAAGACGGGAATTGGGGGAGATA
TGTGATACTTATAGTTAACTCATTCATCTTGATACTCACACTGATACCTAATTAACAATG
AAGCCGAATGCCTTCTTTCGGTCCAATCCCATCCATTTTTGTTGAGGCAATTCTGACTTG
TTCATCTGGAAGTGACCTAGCCCCCGAGATCTGACCTAAGACAACTCCCGACTACATTCA
TTCTTATCGAGATAGTAGCTGTTACCAACCTGATACAATGTAAGTCACAAGCTTGAGACA
ACGAGAATGGACTCTTGCTTGTAGGTGCGAGAGTCTCTTGGAGGAGCAACATGTCGAGTT
GTTTATTGCTGGGCATCGGAAGGCCATTAGTGCTGATGTTGACTTGTAGTACTCATTGAA
CCTTGAGGCTACCATGAGCTTAGCACACGTTGTTTTTTAGCGGACATAACCACACCACCC
CAGGCATGACTTTGTCTTCCAAAGCAACTAAGTAAACAACGGCGGTGTCTGTTGCCCCAC
CCAAACAGCCTGCTGCTGTCCGCCTGCTAGGCAATTCAAGAAACTCACCCCAATAGAGAT
GGCTGACCGGCGCACTAAAGGGTTGTGCTTTAACTGTGATGAGAAGTACGTCCACGACTA
CCGTAGTGCCCCACTCTTTTTGATTGAGATACCTGATGAGGAAGACAACGACGACTTTGA
TGCTGGTGTTACACTATATGTGGATTGCCTAGCCCTTTCCATCAGTTCGGACTTTTGGTT
GCGTT
