Contig Data
morexGenes
Links



Map Locations of contig_46472 (5745 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_46472

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62348 1 414 bp None Available Available None
MLOC_62347 2 957 bp MLOC_62347.1 Available Available LOC_Os02g35900.2, FRAME:+1, EVALUE:9e-68, 13102.m03909 protein thioredoxin, putative, expressed





CDS Structure of MLOC_62348






CDS Structure of MLOC_62347






Contig Sequence (5745 bp)

>contig_46472 5745 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGAGTCGGAGAAGAGGAGGAAGAAGGATCGTCGTCCTCGATCATCG
TCGACCAAAGAATGTAGAGCCGCTTACCTGCTCATCGGAAATAAGCTTCCTGGTATGAAG
AGCTTGAAGGGGATTAAATAGGGCGAGGGAATCGAGGGGGGTGATGAAATTACGCCCACC
ATTTTTTCCAGGACACGCACGGGCTCAACTTTCTCTGCTTGCACGAGCTCGGTCGTTGGG
TTTTCCCTCCATCACGCGATGAGTCTGGCTCCCTGAAAACAATCGATTTGGGTGTTCCTC
AAGGGTTAGGCTGAGGCGTGTTTTAAAGTTTGTGCGGGCTACTTTGACGGTACAACCCAA
CTAAGCAAACAAGCCAAATTTGCTCCACAAAGCCTACATGGGCTTGCGAGCAACCATATA
CGTCCCAAAAGGACTTCATATACGATACATTTTTTGTTAAAAAGAGCTGCGCGACGCATA
GGGAAGCCCAACTGGACTAACCCATTGGCAAGCACCCAAGCAAATGGCACTATAGCATGA
TCAATGCGCCGCAAAAATCCTAAAATAGTAGTGCACATACATGTGTTCGGACTCGCGGCC
TCTCATCACACACTGCTTATTGCTAACCACGGAAGTTGGTGAACATTCAAGATTGTCCGC
ATCATAGAGAGTTTATGAATTAATAGTAGACAAATCAAACATTTTAAGAACTTTTTCGAA
CACTTCCTCAAAATTGTTAATTTTTTGGAAAAGCAAATATTTTATTAAATTATTTAAAAA
AGCGAACAAATTGAAATTATGCACATTTTTAAAAGTGCTAAAAAATGGAACTCCAAACAT
TTTTTTAGTTTTGGAAACTTTTGTGAAGATTTGAACCTTTTTTTTGCAACTCTCAACTTT
TGGTTGAAAGATTTTTTTTAAATTTCAGATATGTTTTAAGATTTGATTTTCTTTGAAAAT
TGAAATAAATAAATAAATTTCAAATATATTTAAAACATGAAGAAAAAATTGAAATTCTAT
TTTTTTAAGAGATGGAGATTTTTTTAATTTTCAAACAATTATTGAAGTTTTGATCATTTT
ATGAAAAACTCAAATTTATGAAAACACAAAAAACAAAACAAAATACGGAAAAATAAAAAA
GAATAAAAAAAGAACCAAAACAGTAAATATCAGCTAAAGAGAAAATTGGATCAGGAACCA
TCAAGAAGATTCCCAATACCGATTGAGGTTACCGAAACTAAAATTAAGCTATGCGCATCC
TCTATTCTTAAATATCTATAATCCACTAGCTAATTTTCCTCTTCATGCAACAATGTCATA
TCATCAAGTCATGCATAAAGTTATAAGTTATTTTTTTTCATTAATCTCTTTACCCAAAAC
ATACCACTTTATGCATTATTTTTTCCCAAGGAATTAAGTCGTGTAAGAAAGTTTTATACT
AATTTTGATCTTCCACCATTTATCCATACATTTTTAACGACGTTCCCGCCGCAACGCGCG
GGGCATCGTCTAGTTTCTAAAATGGGCCAGACCAATTAGGCGATATGTCGATCATGCATA
TACAAACCAGACACACTTTGATATAAGAAAAAGTGTTTAAATCACTCGGATGATTTTCTG
TTACTCCAAGTCGCCCCATACATACGCCAAGTGCCCCACCTCAGCCACCGCTTTCCTTCT
CACCTTATCCCTTTCAATGATCTCTCCTCCATTCATTCTCCTCCTCATCTTCTTCCCCTT
TATTTTCCTTCCATGGCTCTTTCCTTTTTGCACTCGCCGTCGGGTGCTCCGATGGAGCAC
GAGGAGGGTAGCCGATGTTGGGAAGGAGCAGCATGAATGCATGGGGGGGCGTTGCAGTGA
AGCTCCGCCGCCGGCGCCGGCAAGATGTTGCGATGGAGCCCGCGGTGTCGGTGTCGTGCT
CCAATGAGGCATTGCTTGAGCTGCGATGGGTCGCCGGTGCTGCGTTGGAGCACCCCCACG
CCAGTGCGGCGCTGCAATGGAATGTTGCCGGAGCTACAGTGAAACGTCGGAGGGCGTGGA
TACTGCGTTGGAGCTTTCGCCGGCCGCCGGTCATGCGCCATGAGAGTTGGAGTGGGAAGT
TCAGCCGAGATGCCTCAGCGTTGCGTCAAAGCGGCCGCGCGCTTTACTGCGTGGCATTAC
TGTGATCCAACGATATCTGCGTGTCGATCGAACGGCTGCCCAGCCGGATGATTGTTTTAG
AGAAATCATCTTTCTGATTCGTAGCAGTGGCCTTAATATAAAAAGTGTCGATTCTCAAAA
ATAATAATATATAAAAAGCGTCAAATAGGGAGGGTTTTTTCTTCCCTAAAGATGTGTGCC
ATGAGCCGTAAGGGAGCATGCCATTTAATTGTGTGATTTTCTAATGTCTTCTCTGCATGC
ATGAAATTTAAATTGCGTGTGTGAAGTGCGATACCCCTTGAAATTTTAGGCTTGGCTTTT
TTTTTAACACAATGCACACACAAGCGTTTATATACACGCATACACTCATATTTATGAACG
TACATTTGTATATCCTATCCTTATGAAATATATTATCTTGAAATTTATGAAATCATTATA
GACGCCTTGTCGTCGACGAAAACGTTTCCTTCTACTGAAAACGTATCACCGAAAATTCTA
AAATAATTTTAGGAATAATACAAGCATAAGGACTTAAACCCCGATGAATTGGAGATATCA
TCGTCCTTCTAACCATTCAACCACAAGTTGGTTTGTTTTTAGGCTTAACTCTTAACAAAG
CATTTTTCATTTGTAAGAAGACAAGGCCAAAAGAAAAATGAAATCAAAGACTTGGCGCAC
GCACACCAAATCAATCCCAGCCACAAATTTAGATCTTCCCGTTATACTACCTCCTCTCGC
AAGCTGAATATAAGATTTTTTTTCCAGAAAAAAAAAAGAAAGAATCCCACGCAATATCCA
CAACACCACCTCAAGACACCCGCCACCACAAATCCACGAGAATGCAGCCATGATCGGCTC
CTTCCTCCCCCTCCCCACCACCACCACCTCCGGCCGCTGCCTTCCGCCCCGCCCCTGCAC
CATCCTCCCCTTCCCAACAGCCCCGCTCCGCCTCGGCCGCCGCCGGATCCGCGTCTCCGT
GTCGTCGGAGAGCAACGAGGAGGGCGTGGGGAGCACCAACGGCTCGCTGCCGGGGCTTCC
CCCCGTGGGCGAGGAGGAGGAGGACGACGAGTCCTGCCCGGTGGAGTGCGTGACGGAGTT
CAAGACGGACGAGGAGTTCAGCCGGTTCCTGGAGCGGTCGAGGGCGACGGGCGCGCTGGT
GGTGGTGGACTTCTTCCGGCCGTCATGCGGCAGCTGCAAGTACATCGAGCAGGGCTTCAT
GAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCATCTTCCTCAAGCACAACGT
CCGTCCCTGCGTCAATCCAGCTAGGCTGCGTTCCCTTGTTGATTGATCGGTCAAAATATC
ATTTTGCATCTGGTTGCAGGTGATTGACGAGTACGACGAGCAGTCGGAGGTGGCGGACCG
GCTGCGCATCAAGGTGGTGCCGCTCTTCCATTTCTACAAGGCCGGGGTCTTGGTCGAGTC
CTTCGCCACCAGGGACAAGGAGAGGATCACCGCCGCCATTGCCAAGTACACATCGCCTCA
GTAAGCAAAGCATTCATCACACCTACGTATCCATTGTTTATTCGGGTCGATTTCGGAGCT
GCTGATCAGTAAAATGACACGTGAAATTTGCTCCCATGAGATGGAACTGCCTAGCAAAAA
AAAAAAAAGTAGTTAATTCCCTTAGTATTAATCAGTCCATGACAGTCTACCAGGTCTCTG
TATATCCCGATCCTGACTTATGTATTTTGGCATTTCCCTTTTACAGGCAGGAGAAGGAGA
CGGAGACGGAGCCGGAGGAGTAATTTCTACTCCAAATACATACAGACATCAAGAGCCATC
TAGCTAGACTGGTAATCGAGTGGTCTGCCAAAATGAACCTGCATTGTAGCAGGAAGAACT
GGGATTGGTTGTAATAATAAAGCAGAGCATCATGAGATATAGTTGTAAACAGAGAGATCG
AGGTAGAATGGCCGAGGATGGATCCTGCCATTCCCGATCCAGCGACCCCCCCGTTGTAAA
CAGGCAGACCTGATCATTTCAACACCTGAGTTCTACACTGTTGTTGCTGTTGTTGTCAGA
AAACAGAGTTCTATTGTATTCTATTCTGTTTCTGCCTCAGAGCAAAGTTGAAATGGATGT
GATTCACGATTGCTTGATGAAAACTATAGGGACACGGGCACGACGCTTTATCTAGCGTCT
GCTTCCTCGCTGACACGGATATATATATACTCGTATCCATTCCTTTTCGTTCCTAAATAT
AAGTTTTTTTAAAGGTTTTAATATGAACTACATACGAATATATATATAGATATGTTTTAA
AGTGTAGATTCATACATTTTACTCTGTATGTAGTTTTTATTGAAATATGTATAAAGACTT
ATATTTAGAAACGGAGGAAGTATGTTAGTGTACCCCATGGACCAACTAGGAGCCAAGAAT
GCTTCAGCAGAGTCACTGAGAAACCCAAAGCTGCTGCAATGCAGCTTCAACTACTACACC
GGTAAGGACCCACATGCCTTATTATTATCCGAGTCACTTAAATAACAGTTTTATGAAGGG
GTGCTTACATGATATTTTGAGCGACATATTGTGAGGATGAGCGCGATTTCTACTGAACGG
AGATGTCTCAAGATATGCCACCCTGACCTTGTCTTCACCAAAGAAACTGTAGTTGGCAGA
TATACAATCAGGAATACAAACCGGGCATCCATGATTGCGGAATTCATTGCCAACCTGGAC
AGTGCATTGCACTCAATGTTCTCTACCTCTACGACAACTACCACTACTAGCAAAAGAGCC
CGTGCGTTGCAACGGATAAGAAAAACACTCACTAATCTAACAATCATGAGTCCATAGGCC
CAGAGCCGTCGATGAGGGAGGCCAAACTGGTCGACCGCACATGGCCCCAAAATCCTGGAG
GCCCCAAATCATCAGGTAACAACATTAGGTACAGCTTAATCTAAAAAAAGAGCCAACAAT
CCAGCACATTAGCATTATACGGGAGCTTAAACATGCCTACAATTGATTGGTTGCCACACG
ACCAATCCTTTAGGTTTTATTTGCGACCCTGGTCGCCTGGCTGGCTATTCCGCCGCCACG
CCAATCTCTATGCTATTCGCCTGCCCGTCCTGATCGCTTCCTATGACGGTATGAACGTTC
TCACCGGCCGGCGACCATTCAGCTCATCAACGATTGGAGTGCAAATGCACTATGCAGGCC
AATTCGATGTTCATCTATCAGCCATAGCTTGCTCCGTTCGTCGGTTTGGTCGTTCTGTTA
TTTGGTAAGCCTATATGTGATCCGGTCAATCATGTGCCAAGATTTTTTTCATGGATGCGC
CACTACATTTTTTTTCCCGCCGGTTGTAACCACCGTTCCTATTTCTAATTGCCTCTGTAG
CTTGTCTAGTAGGAGTAGTAGTTATCTACGGTGTGCAATGCAACTAGAGCAGAATTAATA
TTAGACGGATGGTGCTTTTTGATAGAACAGGATGAGATTAGTTTGGTACCTTCACTTTTT
AGCATTGATATTAGGTATATTTCTAAATGTGTACGGCATAACACACATCTGAAATTCTAC
AATCAAGCAAGAGTTTGCATCTGTGACCACTTGTATGTTCTTTTA