Map Locations of contig_46448 (8201 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46448

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62330 1 769 bp AK358343 Available Available None





CDS Structure of MLOC_62330






Contig Sequence (8201 bp)

>contig_46448 8201 assembly3_WGSMorex_rbca.fasta
GTGTACAAGAAAGGTATGGACAACCGGGCCGCTCCCGCCCTTTCCCGCGGGCCCGGGCCC
CCCCCCCCGGTGACAAGGTGATCTTGAAGTCGTTACCACAGTCGTGCCAGCTTGGCTCGA
AGCAGTCCAACAATGTTACAAAGATGACCCTACAACTCAGACGGTGCTGACTCGGTTAGC
CACTCAGAAGGATCACTCGGACGGCTACTCCCTCCAGGATGGCATCATTCGACAACACAG
CCGGGTTTGGCTGGGTGACAACATGGACCTGTAGAAGCAAGTATTGGATGTCCTTCATTC
AGGCGCTATTGGTGGTCATTCAGGGTTCAATGCCACTTACAAAAGTGTGTGACGACTGTT
CACTTGGCCAGGATTAAAGCATCATGTCAAGCTCTTCGTCGAAGCTTTCCAAGTCTACAA
GCAAACCAAGCCTGAGCGTGTTCGCTATCCCGTCCTTCTTGAACCTCTACGTATACCAAC
ACAAGCCTCGTAAATGATCACAATGGACTTAGTGGAGGGTCTCCCTCACTCCTCTAGTTG
CAACTCTATATTGGTGGTCGTTGGCAAGTTCTCCCGGTATGCCCATTTCATTGCTTTGTC
TCACCCCTTCACCGCTTTCCAAGTCACGGAGGCCTTTGTGGCACACATCTACAAACTGCA
TGGACTGCCGGAATCTATTGTCTCGAACCGTGACCCAGTATTCACGATCCTGTTGTGGAA
GGAGCTCTTTCGCCTTACCCACACCAAGCTGCACATGAGCACGGCGTGCCATCCCCAAAC
AGTCGGGCAAACGGAGCGAGTCAACCAATACCTCGAGACATTTCTTCGATGTTTTGTCCA
TGCCTGCCCCACCAAAATGGTATGCCTGGTTACCCTGGCTGAGTTTTGGTACAATACTCC
CCCCACTCTGCGTTGGGCACTACTCCCTTTGAAGTTCTCTATGGGCATTTGTCGCGCCAC
TTCGGCATCATCGACCCCATCGCCTGCGCATCCTCAGATTTGGCGGACTGGCTACGGGAC
TGCGAGCAAATGACAGTTCTGATTCGCTACATCTTCTTCGAACGCGCCAAATCATGAAGG
ACTCTGGAGACAAGCGCCCCTCGGGTCGGGTTTTCGCTGTCAATGATTGGGTCTTCCTCA
ATATTCAACTGTATGTGCAACACTCCGTCACCACAAGGCTCAATCAGAAGTTGCCTTTCC
GTTACTTTGGAACCTATGAGATTCTCCAACGCATTGGCGATGTTGCTTACAAACTCGAGC
TCCCTGCTTCAAGCACTATTCACCCTGCTTGCCACATATCTCAATTGCGCCAAGCTCTTC
CCCCAACAGAACAAATCCAACAGGAGCTTCCAACAGCAACATCAGCAAGTGCGCACTCGG
AAGAGATCGTGGAGCATCGCTTGAAACGACGAGGCAACCGAGACGTTCTGCAGATCCTCG
TGCATTGGACAGAGCATCCCCGAGACTTCGCCACCTGGGAAGACACCGATGAACTTCGCC
GCCACTTTCCTCGGGCACCAGCTTGGGGTCAAGTTGTGTCTCAAGGGGGAGGGAGTTTTA
CGATCTTTGCCTTCCTATGCCCGCCTACTACCGATGGCTTCGCCCCAATGGTCGTCGTCA
CCATTGGGCCAAAACGACCGCGTCGATAGATGAAGCCCAATAGTTGATTCGCAGCCCAAG
TCTGGGACACCACCCGTTAGGTTAAGTAGGCATCAATCCCTCCTGAGTGAGGTGTGCTAG
ATGTAATCTCTGAATCGGCGACGGCTTCTTCCTCCCGAACGCTCTCTCTCTCCCTCTGGC
CTCAAATTCAACAGAAAACCTTGTATCGAACCTGTTCTTAAGTGTGGAATCCAACCGGGA
GCCAAAGTTGTCAGAATCATGACTCAAGTCTTAGAATCTTATGATCTTATGATTCAAACT
AGCCCCTCCGATTCTACGATTTATCTCATAGAGCCTAAGTATTTACGATCCTGTTAGTTA
TGATTCTGCGATTCACAATCCAACCAAGGGAGCTCCGATCCTATTGAAAATCTTGATTCT
AACAACTTTGTCGGGAGCGTAACATGTTGTTAGCCATGCTATACTATAGTAGCACCGAGG
AACCTCTACAGAAAAATCATACGCCGGCAGCTTTTTTATGTTGACGGTTTTTTGTCAGGG
CTGTCGACAAAGGTGTAGGTGTGCTGACAGCTGATGAAAAACCACTGCTAAAGCAAGACC
ATATGCAACTCCAAACCTATGCCGACGACAGCCGTCGGCATACACCCGCATGTCGGCAAA
AACGAGACCCGCTGCATTGCTAATGGTCGGCTAACATCGTCATATCTATGGCGCCGACCC
TGACGAAGGTCGTCGGCATATGTTTTTTATTACTTTTAGTTTTAAATCATTTTCTATCTT
TTTTAGTTTGAATCTAATTAATTTGAAGCTGAATTTTCTAAACTTAAACATATATAAAAT
ATACCACTTTCTGATAATTTTTTATGATTATGAATATTCACATTGTTTTTCTTTTTAAAT
ATGTTAAAAATCTGACCGCGTGTATTTTTCCAAATAGGTCTTTATACTTTGTAAAAATTA
CAAGTAATTAATACTTGTATCGATTTTGACAAACTTGATATGCTTTTCCATCATATCTTA
GGATTCTATTGCTATACTATATTTTTAAATTTGAATACTAAATAAAATTATCTTTGCTTC
AAATTGTGTTCAGAATGGCGGGCATGAACGTTCCTAGCTTGTGGTGCAATCTCGCAAGAC
TTTTGTTGGATCTATGATGAAAAATAAACTAGTATACCTATTTTTTTACATGAGTAAACT
ATGAGGAAGCTCTAGTTCAAATTTGATCACGTTAAATATGTCAATTTGTTGAGAGATAGA
TGAAAATATTTTGAGTGGAAACTATTTTTTTATTTGTACATAAAATATGGTTTACTATTT
TTGAAAATTGATGTGGTCCAATTTTGCACCAATTTTGGCAATCAGAAGATTAAAAATAAT
AATTTGTGCAATTAAAATAAAAACACACTTTGTGAATATTGTTTGTCATTCCAAGATGCA
CATTTGTACACAATATGATATCATATGAACAAAGTATGGCATGAATATGGCGATAACACT
GATCATTTGGCTTGAAGTACATGAATCTTCATATATGATAGCTCATTTTTTACAACACTT
TATTTAAAATAATTGTCGTATTTCAAGTTTGTTATTATTTTCTCGAACACAGGTCACATA
TAATGACACAACACGAATATTTTTCATTTTTTAGTATTATGTCGATTTCAGGTCATTCAT
AGCTAGAGGTGGAATCTTGCAAAACTTTTTGTTGGGTCTCTAATGAAATAGCTACTTGTG
TACCTCAAGAAGATTTTTGGCAAAAATCATGAGTAACTATGAGGTAGCTACAGTTCAAAT
TTGATATGGTTCCTACTGAATCGACAGAAATCTATCAATTTGATGAGAGGTGGATGGAAA
CCTTTTGAGTGGTAACCATTTGGTTATTTGTATATAAAATGTCGTCTAATGTTTTTAAAA
ATTGATATGGTCGAGTATTACAAAAAATATATAATAGGTTCTCCATGAAAAAATTCCGGT
GTTGTTTGCACTAGAAAAAATAGAATTTTAAATGAAAACACCCTTCAAGCTAAATGAACA
TTCATGACATTAAATCTAAATGACTAAGTTGATGGCTATATTGTTTGTATAAAAAACCAT
TTTCCATTTTCTAAGTGTCAAAAATGGTTATTTTTTATGAAGCCATTACAGAAACTAGGG
TGCAAAATGGCACCACTTCAATTATCAAAAAAGCATTTTTAGGTACACAAGTAGTATTTA
TATGGAAGAACCACTTAGATATTTAAGAGGTTCACTCCACCTCTATGAATAGTCATGCGT
GCCATTTTGACCCCATTTCGAAAAAATGAAAGAAAAGAATAATATAAAAAATGCAATCCT
TTCACATGGTGTCCTTTTATTTGCATTATTTGAGAGGGAATATAACAAATCTAAAAAATG
AATCATTCACAAAACAGGCTATCAAGTATGAAACATTCATGACTTTCAAGCTAAATGACT
ATGGTCATGGTCATATTCATTTCATAGTTTATGATATTGTGCGTAAATTAGGCACATAGG
CGCATATTTCCATTACAAATTATGTTGCCAAATAGAGTTTCCAACTTTTTACGAAAACAA
TTCTCTATTTTGTAAGTGTCAAAACTCGATATTTTTTGTGAAACAAGTACGAAAACCATG
GTGCAAAATGGCACTACTTTAATTTTGAGAGAAAGTACACCATATTTGATGGAAAATTCC
CAAGTTTTATGGATTTTCTATATTTCTAGCTATGTTCGCGCATTTAAATGATTTTATGCT
GATTTCCTGAATGTAATTCAAATTCAAATATGAATTACAAGTGACTAAAAATCTTGGAAA
ATTTTGGTCAAAAAAAATATATTTTTGGCCTGCGGTCTATGTTTAGGCCTTATAGAAGAA
AAGGAAAAAAAAATCCAAACATGAGAATGCCAATATTCGACCCAAAACATAAAGTTTTTT
GCTTTCTTAATTTCATAAAATGCAAACGAACTTGAAAATCATGAAATATTGTATGGTGCC
TTCATGTCATTCCTACAGGTTGTGGTATAAAACTTAGTCTATTTAGCAATGCTTTAAATG
TTGTAGTTGACACATATAAAACAACAAAGAAGCACATCTCGTGTGCTAGTTGCTCATAGG
TGGAGGCAATGAAGACATGGATCAGTTATGTGGCAGGCTGATGGTTGGCTACAATTGATT
CACGCAGGGCATGTTTGGTATAAGTAGTTGCTGGGACTGGTCCGTGGAGCCTGGGTAAAC
AAGGACATGATGGGGTAAAACAGGTAGAAAACTAACATCCACACTTAGTTTGGTTGCATG
CATACCCTCTAGGCTGCATGAGGTGTTACTCTCGGCATGATGTTTGGTTGCCCGCTTGTG
CACGCACAAACACACAACCTTCTATTTGATGGCATGCACCGCCTATTGTCTGGTAACCTC
TTCAACGCGGTGGTGAGGTTTCCAGCACACAGCAGCCTCAGGAAGAACACACATAATAGA
ACATAGAGCAGATAAATATTGTGCCACACATAATAGATCAGTTCAAAATAGCAGTTCGAT
ACTAAAGTAAAGCGGCTAGAGCATGTTGGGCTTGTCTTAGGGGTTAACGACGAAGGCATT
GTTATGCTTCCCGCACCTGGCCAGCACTTTAATGATGAAGCAGCATGTCGGTAGTGAGCA
GCTTTAAGGTCGCCATGAAGCCTATCTTGATATGATGGGCAACAACGAAGGTGGCCCAAC
CTTGATCGAGGGTGACCTTGCCATTCAAGAAGCACACAGTCACCCTCCATAAGCAGTCGG
TGTTCGTATTCAGCTTGAACTCCGTCGGGACGGATAGGAAGTGCTTCGTGAAGTCCACTG
GCATAGGTATAGCCTCCAGGTGGGAGGCCGTGATCACCCTGCGTAAGTTGGTTGGCCCTC
CCACCTCATGGTAGTGGCCGTAGTTTTGGCGCTTGCCGCTAGGGAGTCCTCCAGCTGGTC
GACGTCCCTGTCAGGGGTCTGGACGGGCATCACCTTCGACAGCGACACCACGTCCTTGCC
CTTGTCTTGCTCTATGGGTGGCACCAAATCCTTCCCCTTGCTCTCTGTGTCGATCTGCAT
AATGTAGAGGTTCAAACGGTCAGGATCCGGAATATGAATGTTACAACATCGTCATTAAAA
CCTATCGGCCACAACCTCTTTATTTAGCCAGCCTGACGGTCACCACTCCACCTATCTCTG
TCTCACCCTTCCCCCAACCCATCGATATGAACTCCGACAACAACCCCTGCCCCAACCCCA
ACCCCATCCCCAAACCCTTCCCTTGGGGCATTGGATGGAGGGCATTATTCCTAGGGTGCT
CGCTCGCTGACCGCCCGAAGTTTGAGAACACCACGGAAGTGTGCTCATACTTCAAGAGCA
TGGAAGAGTTGCACAAAGAGGCTGGCACTGTGGTGAAGAAGGCCACAACAGAGGAGCTGA
AGATATTGATTCCTGATCCAATGAAGGGTGCTTTGTTAGTGGACATACTTCCTTGGGCCA
TGAATCAGGCCGACTCCGACGACGCTGGACAGAGAGTGAGTTGGGCAAGTATAGACACTA
CCGGCATCCCCTTGACCATCGTGCGGCAGTGTACTTCACCACAAGCACTATGGGGGTGCC
GCTGGAGGAGGATCAAGAACCGGTGCATATGAAGATGGGAGAAGATGTTGTGGACTTGAT
AGTAAGGGCGCCGGTGCCAGGACACCGAAGCCTGATCATCGAGCTGGACTCTCGCGAGCA
AGAAGAGATGGAGAAGACCAAGATAAAGACCAAGGCCAAGGCCAAGGCCACCAGCCTCTC
CAATCGCCTCTAGGGTCCCCGAGGTAAGATCCGTGCATACTCTGTAATATGAACCATAAT
CCCCATCCCTCTTGTACTCAATCCGGATCGGAAACCTCTTCCCCAATCCCCTAGTCATGG
TGATACCCCGATTCCCCAATCCCCTAACTTGAATCTAGACTCGAATCAAATGCAAAGTAG
TACGTGCGAAGGGGAAAAATAGCTTACCGCCATTGCCGAAGTGTTGCGTCACGGATTCCG
ATGAAGGTGGCCGGAGGTCGACTTGCTGTTCTTCGATCTGCTGCACGCCACTGCCGTCGT
AGGTGAGTGCAAAAAGGAAAGAGCGGAGAAGGGAGAGAGAACGGTGAATGCAGAGAGGGG
AGAAAGAACGGTGAAGGAACGGTTGTGCAGGGCGGCCGGGTCAAGACGTCCACGGTTCTT
GAATCTTCACATACCGGAAGAAGAAAAGGTTGTTCATCCATGCCCTCATCCTCCACATTT
TTCTTCTTGTCCGGAGCCTGCAAAACACAGGGCCGTTTCAAATACTCCCTCCGTCTCAAA
ATAAGTGTCTTAACTTTGTATTAGCTCTAGTATAAAATTATACTAAGCTTGAGACATTTA
ATTTGGGACAGAGGGAGTACCATGCCTAGAGGTTAGGAGCCGTTGCCTCCAGCAATCTGC
TGCACGTCTCGATCGGTTTTTAATGTGCTACTGTACGTACGCGAGGCTGTCTGCCTGTGG
CATCGCCGTGCCAACCCTCTCATTGTCCATCACGCGCTACGTACAGAGCCGTCCTGCGCC
CTGTCTCCTCTCCTCTGGCGCCAACTCACACGCATTACACTCACCGGACTGGCAAAGTTC
CGAGAACCATCCACCAGGCACGCCACGCTCATCTCAAACCCCTATATAAACCCCTCATGC
CCCTGCTCATTCCACTCACACAACACAAGCTCCCTTCCAGCTTTTCATCCTTCTCATCAA
CTTATTTGTCTTGTGACTTGTGCGTTGCTTCTGTTAAGCTAGCTAGTTGAGTGAGGTTAC
TTTCTGGGAGCATGGCTCGCATGGCGGTGTCGGTGCTGGCGATCCTGCTCGCCTGGTGCG
CCCTGGCGGCGGCGAGCTTCGACAAGGAGTTCGACATCACCTGGGGCGACGGGCGTGGCA
AGATCCTGAACAATGGTCAGCTCCTGACGCTGGCGCTGGACAAGGTGTCCGGCTCCGGGT
TCCAGTCCAAGCACGAGTACCTCTTCGGCAAGATCGACATGCAGCTCAAGCTCGTCCCCG
GCAACTCTGCCGGCACCGTCACCGCATACTACGTAGGCCAACATCTGACACGGTTGCTTG
CTTGGTTGATGTGCGTGCCTAAGCCTAACTTGATCGGTTTGGTGTGTATGAATGTACGTG
CAGCTGTCGTCGCAGGGGCCGACGCACGACGAGATCGACTTCGAGTTCCTGGGCAACGTC
ACCGGCGAGCCCTACACGCTGCACACCAACGTGTTCACGCAGGGGCAGGGCCAACGGGAG
CAACAGTTCCGCCTCTGGTTCGATCCCACCAACGACTTCCACACCTACTCCATCCTCTGG
AACCCAAAGCACATCATGTAAGCTGGTCCATCGCCATTGCCAAACCTTCGTTTTCCTTTC
AAGAAGGCTGGCCATTTCCATTTGTGGCTTCTGCGACACATGGACTGACTGAGTTGGTGG
TGTAAACAATGCAGCTTCATGGTGGACGACATGCCGATCAGGGACTTCAAGAACCTGGAG
GGGAAGGGGATCGCGTTCCCCAAGAACCAGCCCATGCGGCT