Map Locations of contig_46437 (8920 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46437

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62322 1 2157 bp AK250100.1 Available Available None





CDS Structure of MLOC_62322






Contig Sequence (8920 bp)

>contig_46437 8920 assembly3_WGSMorex_rbca.fasta
ATTTTGCTTAGAACGACGGTAGCTTCTGCTGTACGATCTACAAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATGCGACGTTCCCCAACAGTGCAGGCCAGGCTCTCGCGAGCGGGCGCTATGGAT
GTGGCGCAATGACGGTGACCCCGGGCGTGCCCCGCAGTCCATCGTTCATGGATCTTCTAG
GCGAGTCACCCGAGTTTGATCTCCCAAACGGCTTGGAGTGCCCCCGAGAAGCTCCCGTAG
CACGCCACTGGCGATCTCGCCCGCACAAGACCGAGGGGCGGGTACTACAACATATTTTAT
AGTAGTAAATGTGAGACATGTCGGGAGCATAGTTCCTCTAGTTTCTTCTTCAGGAGAGAC
ATTGTTCAACAAAATTTGCTTGACTTGTACAATATTAAGCATATAAAAATGGCATTCTTT
TTCACAAACTTAAGGGATTGCCAAATCTAGTCAAATGAGACATAACCAATTCCCAGTTGA
TGCTTTATTTATCAGATCTTATCTGTAGATCCATACAATTTTCTTTTCTTCTTATATGTT
TGGCACTTGACTAAGACTTGGTTAAGTCTTAATTGACTGGGATCTATCCACATCTATTTT
ATAATCATTTACATGTTATCTATAAGTATGCACACAACTCTTGTAATTTCTTTACTTGCA
AGGAAGGAGTTACGTCAATTTCATTAAGAAGAGAAACAAAATAAAAGAGTGTCCTCGTTT
ATGAGGAGAACTAGGCCAAAACCATAACATGACAGGATTTATTAAGGGCCAACCATGCAA
TAACCCAACAACTAAACAAGAAGAGAAAAAACAACTCGAAGATCCACTTCCAGCATGACC
ACAACTCAGACATGAATGGGTAACGTCTCCAAGAAGGAAAATGACGCCCATGCAGGCCGT
CCTCGTCGGCATCAACCCTCGTCAAAGACTTAAGCTTGTGCCCAAAGCCACCCACAACAT
CCTCGTCAAACCTTGGGAAACAGGTTAGCCCCACAAACATCCGCCACGGCAAGTCGCGAA
CCAATATGTCATGGTCTAGTGAAAAGGGAGGAACTCTTCGACAACAACTCCAAAGAAGAG
GGCGCCATAATACCATTGTCTACGGTTTCCATCGATCCAAGGATTTTGGCCAGCTCCCTA
AGGCCCTCCACCCATCCAAGCCTCGAGGAAAGGACCCAGCCGCTGACCACGACAAACATG
TCGAGGCCGTGATGTGCTAACAGAAGCAGACCATGATTACCGTAGGTGAGACATTACCGA
TCGAGCTTCACAAAAGAAAGGACACAAACACACCCCACTTAACAGTGCAACACAAGTGGT
CCCCAACTACAGTGAGAGCCAGCCCCGACATCGCACCACCCGAACCTGAACTAGGTCCGC
CACCACCCGTGCACGCATCATGTTGCTCCCACCACAAGCCTCCAACCAACCGCCCACGCG
TTTCAGGGCTTCCAACACCACCATCGCCCGCCATAGCACGCCAATGACCCCAGCCCATTG
GATCAAGTCGAGATGCCCAGTCCCCACACCATCCCACCTCTACCGCAAGAGGAGGAGGGA
AGACCCACCACGACCTGGGGCCACCGCCCTAGCGCACCAGCACAAACATGAGCTTCATAG
ACACAACAAGGCTTGGACGTGCACGAATCTATGTGCCTTCGGGACGCACCAACACATAGA
ACGACCCCAATGATCCCGGAGCCATCACCTTCCTTTAGGCCGACGTGGGCTTAGCCGGTG
ATGGCGAGACGAGGATGGAAGTAGAGATTGGTGGTGACAAGTTAGGGTCACGTGTGTCAC
CAAAGGAGGAGGATGCGTGTGTCTGTGTAAGATAAGTTAGAACTCTTTTGGTCATGATTT
TTTTTGAAAGGACTCTCCACATTATTTTGAGCGGGCTCTTCTCCACATAAGAGTGGAGTT
CTGGCAAGCACCTTTGCACAACTTCTTTTGCATGGGTTGTATGTCACTTCATCTTACTAG
CTTCTTTTGGATGCCCTTTAAGTTACATGTGAACATGCCATTTGGTTTGATGATATTTTC
CTTTGCCGAAACTATTTTTCTTCGGCCATCCAGAAACAAATTACAGTCTTTATGTATAAA
CTATTGTGACTTGCTAGGGCGCCGCCAAAATAACAAGATCTTGATGTGGCAAGCCATGAG
AGGAAAACTATGAGCGGCTGACCAAATCCGGGAACGTAAATGGACTGGGCTCGACCCATT
GTGCTTTATGCTTAGCCCTGGAGGATTCGGACCATATATTGTTCGGGTGCGGCCTGGCCA
GGTTAGCCTGGTGTTGTATTCGATCTTAATTAGATGGGGTTTCCTGGGCTCATACCTCCT
TCGCTGAGCTACGGCCGCTGGTTGCAAGCCTTGTGGAGGCAAAATAGACATATTTTCTAC
GTGAGGTTCTCAGCGCTATGTTGGGCAATGTGGACTAATACAAATAAATTCAGTATTAAA
AGTATTTTTCCTAAGAGGCCGACTGATTGCTTTTTCAAAATGATCACCTTCTTGCAGTAG
CGGAAATTTTGACTAAGGACGTAGATCGGGTTGCACAGGAATAGCTGATTTTTAGGGTGT
GATCTTCTGCTACCTCCCTAGTCTACTCTCATGGCGTCAACTAATGATCCTCACGCATTG
CTCCTCGTTTTTGTAGGCTTTGTAGGTTGTTGGCCTGTGTGCCACTGTTATCTGGCATGC
GTGCCACTAGCTTTTACTTTCATACATAAATTGGTGAAAATTGTTGTTTGGTCTCATTGA
CTCTACCTAATGACTTTATTTATAAAGTCAAAGGTATGTTTTTTCTCTAAAAAAAAGAAA
TTTTATTTGTATCACCAAGTTAGGTCGGAGAACATAGTAGACTCAAATATGTAAGTAGAA
CACTTAGGGTTAGTTTTTTTGATAGCTTTTTTGGGCTTCTAGAATAAGCTACCCCCTACC
CAGCTTATTCTAGAAGTCCAACTAAAAATATTTTTTCAAAAGCCTAGTAACCAAGACTTA
ATTAATAGGCTTCTAAAAGAATATATTTGATTGGGCTTCTAGAATAAGTTGAGTAGAGGG
CAGCTTATTTCAGATTATTCTAGAAGCTACCAAAAAAACTAGCCCTTAAATAGCAACACT
TGAATATGTGACTAAGAATTGAGAGAAGCAGCACTTGAATATGTGACTGAACTATTTTAA
CTTTCTGGTCCGTGGTCTAAATTACTATTTTGTAAGAAAATTTACGATCGATTTATAATT
GATCGTGACAGTGCAGAGTCGATGGACCACTTAACGATGACTACAAACTCTTGAAAGAGT
CGAAAGTGTGGTGTCGTCATCGTCCCCCCCCAACGGCGGAGCCAACTCACTATGATAGCA
TGCGCAACATAAGAAGGCTCATCATGACAGGCTGCTATTTGATGATATGCCCACGAAAAA
GCTTGATTTTTGTCATACTTGCTATTATTTTAAGGAAGAGAATGCAAGCTGAGCTGGGGC
AACTGTCCGGGGTAGCTGAGCGGTGGCTCGGCCACTCGTCCCTCCCTAGTTAGAGTCGGT
AAACCGTGGTATATGCATCATTTTCACGGACCATATAGCATGTAAACAATAGAGTTTTTG
CACTTAAAATGGTTTTTTATTTACAATGCATCGTATACTACTGAACAAAGGTGTATCATT
CGATTTAGCAAACCTTAGTTTTGCACAAGGAGAAACTAGGAAGGTTGCAAGATTTGTTTT
TACCCCAGCAAGTACGAACTCCTGGATTGTTATGCAGCTTTTCTGACTTTTCCTATCCAA
CGAAAAATACTACACCGTTTTAGCAAAAAAGGCTACACAATTTGATCTATAGTATCGATT
AATCTATTCCGTTGGAGGGATAAAATGGATGGCTCGTATTAGTTTGCTGCCCTGGCGGAT
GCAACGTATAGGAACGGTGGTCGTGGCACACCTAGAATTTGGGGGAAAAAAATAGCATAT
AGTACTAATTTAGTCAAAAACTGTTTAAGCCCAGCCGGTACTGCCCATTTAGGGTTCTCG
TCTCTCCCTCATCACTCGTCTCTACCTTGTCTCTCCCTCCCGCTTCCCGCGATCCCGCCC
AGTAGCCGTCGCCAGCCGCCACGGCTCCGGGCTCCGGGGAGGCGGCGACTCTCGCCGCTC
CTCTCCCCTCTACCGGTCTCCTCCTCACGCTACTCCTGTTGCTCCCCTCCTCTCATTGGT
CTGCTGGTCGTTGCTCCCCTCGTCTCGCCGCTCGCCGCTCGCCCCGCTCAGCCATCGTCA
TTCCCGCCAGGCGCCAGTGGGCAGTGGCCGTCTCCCTGCTACGGTTTCCAGTCCTCAATG
CCAGACGGTCTGAAGCTAGTGACCACCCCAGTGCATGCACTAGCCCTCCGGTTGAACAAA
TTAGCAAGGTGAAATTCCAAACCTCCCCAAAAATTGATGCTTTCCTGCTTAGTAAATTGA
TGCCCAGTCGACGTCTAGAACTGATTTGGTATGTTGTTGTTGGGCTAGCAATGATGTTTT
AATTTTGATATAATTGCACAGGAGAACATGAAGAGGAATGGTGCCATTCTGTACCTTTTT
CGTAAACATGAAGAGAAAGCGAGGAAGAATGCTATTGAACATCACATCGAAGATACTGGA
AATGCGGGGTGTCCTAATTCCCCACCTCCAATCCATTCTGATACGGACATTGATACTGAG
ATCGATATTAAAATCGAAGAGGCAACACCAAGTCTTCCACCATCCCAATAGCCAAGCGCA
CATGTCTTTTGAGGTGATCCACCAAAAAGAACTCCTATTTCAGAGTATGATTTTAATGAT
CAAGATAGTGTTCGAAGAAGATATATTGCAAAAACAGCGTGTCATCCATATGGACATGCT
TTTGAAGTCAGGAAAATCTATGGTAAAAATCGACACTTTAGTTTTGTTTGGTTTGAGAAG
TACTTATGGCTAGAATACAGTGTCTCGAAGGAAGCATCATATTGCTTTGTGTGTTACTTG
TTAAAAGGGGAAGCTAATGGGGGGCCTAGGGGTGATGCCTTTGTTAAAAATGGTTCGAAA
AACTGGAACAAACCTGATGCATTGGACAAGCATGTAGGTGGTATTGGTAGCATGCACAAT
CAAGCTCAAGAGAAGTATAATTCGTTTGTGACACCTCAATCATCAATTGATAATATCATT
GTGAGGGTGTCTAAAGAGGATATGCGTCTTTACAAGGCTAGGCTAACCTATTCACTTAGA
TGCTTGAGGTTTCTTTTGAACCAAGGATTGGTGATGAGAGTGATGAATCTAGCAACAGGG
GGCTTTCTTGAACTTCTAAAATGGCTTTCGGGAAATGATGAAGAAGTCGATAAGATTGTT
TTGCACCATTTTGGGGGAAATTGAAAGTGGAAGTGGGTTAAATCAAGAGATGGGATTATC
TAGACCCGATGATACTCGATGGGGTTCTCATTTTCGAACCATTTTGCACATTGTTACCAT
GTATCCCACAATACTACAGGTACTTGATACTATTGTAAAAGATCCTTCACAAGTGATGAG
TGGACAAGAATACGTGCAGTGAATTTTGCCTTGGAGTCAAATGACTTTGTTTTCAATGTT
CACGTGATGCTCGTTATTCTTGGCCACACTAATGAGTTGTCTCAATCATTGCAAAAGAGA
GATCAAGATATTGTTAATGCAATGGCACTTGTTAGTTTGGCAAAGAATAAAATACGACAT
ATGAGGTCGCATGGCTGGGAAGAATTTCTTGCAAAGGTGACATTTCTTGCAAAGGTAACA
TTGTTTTGCAACAAACATGGCATTGAAGTTCCTACACCGGAGGATAATTATGTGCCTCAC
GGAAGATCACCTCGGTATTACCAAGTGCAAGCAAATGATGATCGTTATTGAAGAGAAGTA
TATCTTGGTATCCTTGATCAAATATTCAAGAGCTTGATAATGGGTTTGATGAGGTTAATA
TGGAGTTGCTTATTTTCATGTGTGCTTTGAACCCCGCCAATTCATTTGCTTCTTATGATG
CACTCAAGGTAATGAAACTTGCTGAATTCTACCCCAAGGACATATCAAACATATATTTGC
TAAGGCTTGAATTCCAACTTGCTACTGTTATTGATGATATGAGACAAGATGATAGGTTCA
GATTTGTGCATAATATTGGTGAACTCTCTGTTATGCTTGTTGGTACAAACAAACATGTTC
TCTATGCTTTGGTCTACATGCTTATCAAATTGGTATTGATCTTACAGGTGGTCGCGACTA
GTGTTGAAAGAGTATTTTCAGCAATGAATCTAATGAAAAATAAGTTGAGCAATAGTATGA
GTGATGATCTCATGAACAATTGTTTAGTCACATTCATTGAGCAAGATGTGTTCTTGAAAG
TAAGCGAGAAAGACATAGTTGAAGCTTTCATGGCAAAGGGACGTCGTAGAGTTACTTACT
GTTGTAGTTTCTACATGTCTACGTATGCGTATCTTTCATGTATTGTATTTGCAACGTTGC
AAATTTGAAATATTTTAGAACTATAATGTTGTCTGACTTGATTGGGCTATCTGCATCGTA
TTTTTGCCAACTATTATGTGACACTTGGATTAGATAGATATCAAATTAGGTGTGCACACC
CTTCATTTTTTTTCTTCCTCCGCCACTGGTTTGCTGTATTGTAATATGCCTAAAAAAATA
CAAGATATATTATTTGCACTGTTCGAAGATCCCTCAAAAAAATAACCACCACACCGGACC
ATTGATCTCAAAAAAAGGGACACATAAATTTCTCATGAATATTTATCACACATTGTACCC
CTTTTAACCTACATCGTAGAGATTCTACTGGCTACCTACCACTACCAAAGCATGCAATTG
CAATTTTTGGCAACAACCCGGCAGCTCTATAAGAACAATACAAAACATCGACTTTTAAGA
ATATCCAATGGAAAAACAGTGTTATCACTTATCAGCTAAGAACATCTGAAGCCTTCTGAA
CTTTGAAGCACATTATCATCTGTTCATGTTCTTGATCCTTAGCAGATAGGCAGGGGCTCA
CCGTTCCAACCCTTGAGACACTCAAGCAGTGCGTCGATGTGCTTGCCCTTGTTCATAGCA
ACAAACACCTTGTCCACTTCTTCGCCGGGAGACCTAGTCTTCTCGCCGGTCAAGTACTCT
GTTCCAAGCTCCTTGCGCACAAACCGGTAGAGTGGGTATGATCGGCATTCAGTGATACGG
TTTTGTTGTGTGGCAGTACCGTTCTCCACGGCACTCCGAGCAGCCTCGACCTCCTTTGGC
AACATTGCACGAAGCTCCTGCTCGAACACGGCAAGCTTGGCAAACACAGACGTCTCCACG
TCGCGCTCCGCCTCGCCATTGGCCAAGGCGTGCTCCACAAGAACTGCACGCATCTTCTGC
ATGAGTGGGTAGTTGGCGCTGCAGGGGTCGTCGGCGTAGGCGAACACCGCCTCTCGGTCG
ATTGTGAGAAGAAGGTCCTTCTCGCAGAAGCGTGCGCTATGCAGATGGCCATTGCTGTTG
GTGCTCAGTGTCTTCCTAGCCACCGTCTTCACACAACTCTTGACAGCATTCTTGACATTC
TCTTCGAGGTGGCGGAGGTCGATAGCCTGGCACAGCGCGACCAGGAATGTCGAGGACATG
AGCTTCAGTATGTCAATGGCCTCGGCGGTCTTCCTAGAGGAGATGAGGCCAAGAGAATTG
ACATCTTGGTTATGCTGCTCCGCGCTCTGGACATGGTTGGTCACAGGGTTGCCCAAGAAC
TGGAGCTCAGAGCAGTACGAGGCCATGGCAATCTCGGCACCCTTGAAGCCATAGTCCAAG
CTCGGGTTGCGCCCACCGGAAAGGTTGGAAGGTAGACCGTTGTTGTAGAGGTCGTTCACC
AACTCTGAGAATTGGGCAAACATGAGCTTGCCAATCGCAGCAATGGCAAGCCTGGTGTTG
TCCATGGACACACCGATGGGTGTACCCTGGAAGTTGCCACCATGGATAGCCTTGCCACGG
GAGACGTCGATGAGTGGGTTGTCGTTGACGGAGTTGATCTCTCGCTCAATCGACTTGGTG
GCAGCACGGATGACCTCAATCTGAGGGCCAAGCCACTGCGGCGACGTGCGGAGTGCATAT
CTATCTTGCTTTGGCTTCATCAATGGGTCGAGCTCTCCAAGCTTCTTCGCAAGCATCATG
TAGGAGCTACCTTCGAGTATGTGCTCCATGATGGCGGCAGCCTCGATTTGCCCTGGGTGG
TGCTTCAGCTTGTGGGTCAAGTGGTCAGTGTACTCCGGCTTGCCGTTCATGACCTCACAG
AAGACAGCCGACAGGACCTCGGCAAGGAGGCTAAGGATGTTAGCCTCGAAAAGCACCATG
GATGCGAGCCCAGAGCCCACTGCGGTGCCGTTAACCATCGCAAGGCCTTCTTTGGGCTGC
AGCTCAAAGAAGCCGTGCTGGATGCCGGCGATCTTAAATGCCTCTGCAGCGTTAACCTTC
GTGCCATCCGGAGCCGTGGCCATCGAGTTTGGGCGGCCGGTTACCAGGCCCGCAATATAG
GAAAGCGGGACGAGGTCACCGGACGCGGTGATCGTGCCCCGGAGCGGCAGGCATGGTGTC
ACGTTGGCGTTGAGAAGTGTGGCGACCGTCTCGAGTATCTCAAAGCGAATGCCTGAATAT
CCCTGCAGCAAGGTATTGACACGGACGAGCATCGCCGCTCTGGTCGCCGCCGCAGGCAGA
ACGTGCCCGTCGTTGCCGGTGCCGAAGGCTCCAGCGTTAAGGAATCTGAACACACAAGCA
ATACACGAAACAAAATAAGGCTTCCATAACTAAGAGACAAAGATGATCAACAGGTGAAAT
ATAATCTGTTCGTTGTTTAATTCGTACCTGATGAGCTCCC