morexGenes - Barley RNA-seq Database

Contig contig_46428
Source Contig contig_46428
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46428 (7104 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_46428

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62314	2	1749 bp	MLOC_62314.1	Available	Available	LOC_Os11g47330.1, FRAME:-3, EVALUE:0.0, 13111.m04692 protein ATP-grasp domain containing protein, expressed
CDS Structure of MLOC_62314

Contig Sequence (7104 bp)

>contig_46428 7104 assembly3_WGSMorex_rbca.fasta
TATATGAATATGAGTTATATGAGTTGTTAAATGAGTATGAGTCATATGAGTTAAATGAGT
ATGAGTTATNNNNNNNNNNTGAGTATGAGTTATATGAGTTATATGAGTTATATGAATATG
AGTTGTTGTGTGAATATTCTGAATACTGCTAATATTGTCGATGATAATGCATTCTGATAG
TAAACGTTAGCAGTAGCGCTGGAAAGTATTAGCAGTAGCACTGCTTAGCAGCAGCGCTTT
CTGTGATCAAGCGCTGCTACTAAACTTACCAGTAGCGCTGCATGTATCTGCGCTACTACT
AGTTTTTAGTTGTAGCGCGATAGCAGTAGCGCGTGGACCAGCGCTACTGCTACTAATATA
TCAAGTGCTACTAGTAGGGTTTTCCCTAGTAGTGATAGGGTCATTGTCAGAGACCTTGGG
ATAGCTAGCCTGCATGTCGTGCTCTATCCACAAAGCGCAGCGGGTCTACCAGGCGGTTGC
AAGGGCGCCTATCTCGTGTTTCTACTCCGATGACAGGCTCTCCCACAAATTGCTAGAGCT
TGCGGTCATGGCGGATGTGGTGTAAGGAAGGAGGATGTGGAGCGGATGTCGTGTTGTGTG
GAGTTAGTCGGGTGTGGCCGCCTTTAAATAGCGGATTCCAGTGAGGCCAAACGTCTGGGT
GCGTCAATGCACGGTGCCGGAGTTGGTTCCTCGGTCGACGAGCCTGCTTAACGGAGGCAT
GCGTACAAACTCGCATTGAACGGGCGTCGTAGATATATGTCCCCTCCCGTGCAGTAAATG
ACTCTCCAACGTTGAACAATGCGGACACCGGGGACACGATGCGGGCGGCGCTCTCTCGGC
CAGCGTGTTAATTCAATGTCGGCAATGAGAGGTCGCATCCAATCTAGGCTGACGTCAATG
CGGAGCGGTCCCTCTAGAACGGCATGAATGCGGTCAACAGACATTGGCGAGAATGCGCAT
GGACAAGGAAAGAGGGTTTTTGGTAGGCCAGGATAGTCAGGAGCGGGCGTGACACCGATC
TGGACGTCCGTAAAGCTCCCTCCCGCTCCCCCTCCTTCTCAGTTTGTCTCCGTTTTCAAA
AAAAAAAAAACGTCCAAATGCAGGATCATATTGGATGGCAAAACATGTCCGGATCGCACG
GTCGGATGGCTTGAGGGTCAGCGCTGTAAATGCCAATGCCCTTAATTGCAAAATTTTCAT
TTGGTTGTCGATTCGGTACTGTATCTGTAGCATCAGAGAAGCTTAACAGGAGGGGCCTAC
AAGATCAGCCATCTTCTTGCTCCTTGTTCAGTGCAGTTTCTGAACAAGTTCAGTAACACA
ACACACCAAATTGCAGGTGTGTATGAGGCAGTCAAAGCAAGATCATTGCAATTCCGTGCT
TGTAAAAGGCTACAGACATATGCCGGTTTGCATGGTAATAAATCTTTTGTTTGTCACATT
ACAACAGCACAGGTTCCTTTACGACAACAATATATGTGTCTGTCTGTTCAAATAACTTCT
GAAAAAGCTAATCAACCATGTGATGTGATCCTACTTCGACTATGCTCTCATTTATGTGGC
AGCCATGACGCATCCAGTTTCTTGTTTGCAGATCGCAAACAACTTCTCAACTGTATCCTG
ATTTATTAAGCTGCCATAATGCATTCAATCGCCTGCTTGCAGATGCCAGTCATTGTTGCT
TCGGGTCCATATACCTGCAGTGGATTGTTCAAGACATAATCAGCTCACCTGTACAGAGAT
AGCAGCTCTGAACCACCAAACAGAAACAGATGGACTTTCGCTTTCGCAAAAACTTGGATC
GGTGAGTGGTTTTTGTTCAGCAAACCGATGAAGAATTTTTCATAGCAAATGAAATAGCTC
AGCGTGAGCTTTTTGCATAAGATTCCTAGGAGATACTGACTACAACAGTACCTCAATCGG
AACACCGATTTCTGCACCAAGCTTGCGCATTTTCGCCAGTCCAGTTTGGTAGTTTGGACC
ACCTCGTCGAACATAGAGGTACATCCTGGATGCCTTTAACTTGGATTCCTGAATGTAAAT
TTTATAGTGAGGTGGCAGTTATATGTGGAAGTAAAAGGAGAATGCAACACTGGCCAGAGT
TGCAGATTGAGTGCTACTGTATACCTTCTCTCTTAATGCCCGAATGATGCCACTAAAGGT
GGCAGCAACATCAGTGAAGTTGGCTATACCACCTCCAATGAGAAGGGCTCTCTTGCGGCC
ATCAGGGTCCGCAGTCGCACACTGCATTGAATAACATTGTTAACATATGAACCTACATGA
AGCGAAGAGTAGTGTCATAAAATGTTATCTTGAATGCCTTACATCAAGTACTACTCTAGC
ATACTGCAGAACCTCCTCCTCGTTGGGAGCACCACTGTATTCTGCGTAATTTCCTAACTC
TGAAGCATATCCCAAATCTCCAACCTGGCAAACCAAAGAAAACTTTAGTCATGTATACAA
CCCAATTCTGGTCAACAGATGGTAACATGGAATACTTCCACAACTAACTTAGAATCAGGC
AAAAAGGTGTGCTTACTGTGTCGGCGTATATGACACTGGCACCACCTCCAGCAACCATTG
TCCAGATGCGTCCCTTTGTGTTCAAAACTGTGAACTTTAAAGACGCACTGGTCTGAAAGA
ATGGATACCATACCACAGTCAACGCATAGCTCAACAAATCATTCAGTTCAGCGCAAGTAT
TTATATTACACTCATGTGCAAACTTACGTAACGGTAGTAATTCGTAATTCATACTTCAGG
TGGAAAAACGAAGAAAACAGAAGTGTGATTCCAGATGTTGGATAATACCTTATCGTCCAG
CTCATGGATAAAACTTTCTGTAGAACTGAGAACTCTGCCGAATGGTAGAGGGAATTCTAC
ATTTCCCCACCTGCGATTTTATCAGAACTGTTTAATACAACAATCACATGGAGAATCATA
CCACTGGGAATCAAGAAACTCACTTCTTGAAGTTCTTGAAAGATGCAGTGTCATCCAATT
CTCCTCTCATGTCCAGAGGATATGGCTCCTCATTCACCATGGTGAATGGGTTCATCTCAA
TAAATGAGAAATCTAAGTCTGCAAAAGAGGAGCAAATTTTTTGTGAATATGGGATGCCAA
GAAAGCTAACAACGAATAAAATCACTACTGATGACAATTAGGCTCTCTCCAAATCTGCAG
CACCTTGGAAGACAGCAAACACTCCTTTAATGAAATCACCAATCTTTCCGCGTGCCTGAT
AAACAAACAGACAGTGAAACTCTAATAAAATTAACAACATGAAGTAATGAGGTAAGTAGT
GCTACAGTGTAGTTACCTCCAATGGAAGGGTTGCAATCAAGGGAGCACAAGCATCAGGTG
TCATTGGCTTCTCAGTCGGAAGAAAGACTGTCTTAACCTTGTCCCAGTTTTCCTCGATTT
CAATGCCTCCACATTCCGAGAAGCTAATGGTGCTACCCAACCTTTCGGACACAATTGAAA
GATAGTATTCTTGATCGTGGGGGACAAACGGCTCAACTATAAAGGTGGTAATTGGAGCTT
TGCAGACGCCCATCTCAACCTGAATAAATCAAACATGCGCACATAAATCAGAATTCATTT
TGTTCTCATGCACACAAAGGATAAGAGTGGCCTTCAATTACCTCAACTCCCAACCGATCC
TTCACAAACTCCTTGACTTGGGCTACATCCAGGTTGAGTGCCACAAGTCCACTCTTCCCA
CGCTTCCCGAACAGCATGTCAGGCTTCACAACCAGTTTGGTGGTCGACAGCCATGGATGC
TGGTTTACAAGCTCCGCAAAATCCGTCGATTGTGTTACCTTTCAGTAAACAACTTACAGG
ATCAGATCAGTCAAACAAACCTTGTCAGATATCAAATGTTGATAGACCATTTCAAATCAG
AACTATTTTTTAAGACTGGAGTCACTCGGATTACGATCCAATTTTTTTTCAATGTTCAGA
TTCCGATTCATGTAAACCAGGCCTATCGATTAGGAGAAACCGCAGACTCCAAAAGTAACA
AAAGAAATGGCGAATACCCAAAAGTAACAGAAGAAATGGTGAATGCCCAGAGTGTCACTG
TCACCCTCCTACGTATCACACAGGGCAAGACATAACTAACCATTTGCAAGTAATCGACAA
ACTATATCACACAGTGCAGGACAACTTCGGATCTAAGTAAGACGACAATAATTTTTGAAA
GATTTGGGGCACCTAACACAACCGCCAGTACCAAACTGCAGCAACCATTGCTCCTAAAAT
ACTGCACCTTTGGCTTTATTCCCAAAGACCTCAGATAAATTGCCTCTTGGCACGATCTCG
AGACAGATCTCCATCCTAAACGAGGAACTATTTCGGTCCTAAACTTATTAGTATGGCAGT
TCTGCATTGGCTTATCACTGCTCGTCAGAACTGGATCATTGCACTCTTCCAGGCCGCCCG
GATCATGCGAGAATATGCAGAGATCCAACCAGGTATCACTCAAAAAGGAAAACTTCTCGA
AATTCGAGATCAGACCTGGGCGGAGAGGATGTGCAGGTCGATGGCGGCCAGGCGCTTGAG
GTGCTCCTTGAGGAGGCGCTTGGAGTCGTACTCCCGAATCTTCTTGCGCGCCATGGCTTG
GGCTCCCTGAAGGCCGGAAGGCTTATGGTGGGTGGAGCGCGCGCGAGGTGCTGTGGTCTC
GAAGCGGAGTAGAGCGGTGGTAGGTGCCAGTAGCGTTGCACCACCAGGAGGTTGAATATA
TAGCAATGTCTTGTGTTAGATGGGATCCAACATCCAAGCAACCAACCAATGTAGAAAAAA
ATCTCAATAAAAATGTGGAAAGAAAAATAAGGAAAAGGAAAAGGTGGACATGGGACATGC
GCACCTCTTATGAATGTAAAATATACTCCCTTCATCTTAAAATAAATGACTCAAGAATGA
CTCTACTTTGTATTAAAGTTAGTACAAAACTGAGTCATTTTTTAGTTACTTATTTTAGGA
CAGAGGGAGTAGTAAATATAGTTTAAAAATCAAATTGTTTCAAAAGAAATCATCAAACTG
CTTAGTTTTTCTACACTCACGTGAAGTTTAGCAAAGAAATGACATATGTGATAATATTAA
CAGAAAAAACGAAATTGAGTCTCAAGAATGTCGGCAGTCATGCTTCACTAATGGACTTTT
CATTCACCCCTTGCACTGCAAAGGACCTTTTCCATTTCTACAATGCGCATATGGCATGTT
GATTTTGCTTAAGTGCAGCCTTGACTAGGCTAGAGTAATTAAGAAAATTCTCAAGGCATT
TTTGGAATTCTCTGACCTAAAAATCAACTATTAGAAGAGTACGTTTCTGGCTCTCAATAT
GGATGATATTTCCGCTACGGAAGTCGTGCAAATTTTGGGTTGCCCGATTGATTCCCTGTT
ATGCAGCTATCTTGGTCTGCCCTTGTTCGCTCATAAGACAAAAGATCAATGCAGTACTAT
CCGCAAATCCTGTGACATTACATGTCATGCATTATGCGGTCTCATGAAAGCTTCCAGAAA
ATATGCAAGATCACGGGTTCCCTTTTCAAGAAAAATGCACGAAGGTACATGGCGATCAAT
ACATGGTCGTTGAAACATGCTCGTCCTACCAAAAGAATGTGGTGGATTAGGCGTCAGAGA
ACTCAGAGCACAAGCCATGTTTTGCAAGCTTGTTACAGAGATACTGCAAGGAAATAATTT
ATATGTTGGAATTGGTTCAGGAATGATTACAAACACATTTTCATTTCGGGTAAGCACCGA
CTTAATATACTGATTATGAGAACTATTCAGATGCATGTTCTCCTAGTACGGAATGCAACC
GCTTGCACGTTCGGAGACGGACAAACCATATCATTATGTATGGACACATGGTGCACGAGT
ATCGGTGCTAAATCTGGTGGATCTTGGGTAGGGGGTCCCGAGCTAGTGATATGGGCATGA
TGGTAACAGGACAAAGGAAGACGCAATGGTTTACCCAGGCCCGGGCCCTCTCTAGGAGGT
AAAACCCTATGTCATACTTGTATTGTATTGATTGTGGATGGGGTACAAAGTACATGATAG
TCTACCTCGAGATCATATGAATGGATTCTAGTCTCAAAACCATGCCTCTACAGACTAAAT
CCCTCAGTTTATATAGGCACCGGGGGTATCTAGGGTTACACATATGTCGGCTACAACTAG
GAATAACATGTCGATCCTACCACCATTCCTTGAAGCGGTGCCAACTCTTCGGAGGATTCC
ATCTTGAGTAAGCCGAGGGCCAGATCATGCGTGACCCATTCACTAGTTGGGGGTGGGTCA
TCGGCCCGACCCAATCATGGCGGGCAACGTGGTGTGCACCCCCTAATCAAAGACATTATC
AGTATTCCCTGGACTTGTCTTCAAGCCAAGGACATTTGTTGTTTCCTCGGAAGGGATTCA
TGGTTTAGGTCTTTAGCTTCATAGGCGAGCTCTATCTTCCCTTCGGCTAGTGGATCCAAG
GACATATCCGGATCCAAAGTCTCTTCTCTTCATTTGTGATCATGCGATGATTTATTCTAG
GTGGTGAGGAATATTTTTTAACAAGGACCTTCTCCAAAGTAGCTTTTTTTAACAGGCATG
CAGCTTCCTTTAGCGTGGCTACGGAGGCGTGGACTCAACAGTGGGCTGGTAGAGCTACGA
AACGTAATCCATCACTTATGGTAAAACCAAAATGTCCCTTCAACTATAGTCATAAGGCAT
ATCACAGCCCAAGGTCACGTCTATTGGCGTGTCTACCTCATAAAGAGATCATGCTCCGGA
TTTCTAGCGACATCATCATCAAAAGCACCTTAATCCTTGCGTGTATATATTGCACGAAGT
ATCAGTAACCGGTGATTTTACCGCACGGTGTGGCAACCACTGGTCTTTTATAGACCAATA
AAACGGGAAACATGTCATATTTTACACATGCTCCCAGCGCATGCTCAATCGCCAAGAACC
CTCACCAACTATAGCGCTCTAAGATCCATCCATCGCTCATGCATCATGCCCCTATGAAAG
GATGGCCAGCAAGGGAAAAAGTGTTGTTTCACCGGCAACCGAGGCTACCAGCATGAGGGG
GCAATGGTGTTGGAAATATGCCCT