Map Locations of contig_46406 (9078 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46406

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62296 4 5556 bp MLOC_62296.1 Available Available LOC_Os09g30070.1, FRAME:-1, EVALUE:1e-162, 13109.m02993 protein expressed protein





CDS Structure of MLOC_62296






Contig Sequence (9078 bp)

>contig_46406 9078 assembly3_WGSMorex_rbca.fasta
ATTTTGGGACGGAGGGAGTATTAAAAAAAGTTAGCAAAAGGTAGACACCATTGATTGAAG
GATCACAGTGGAAGATACTTTTAGTTTGTCGTTCACATCAAAGTGCTTATATCAGTATTA
AAACAGAGAATCCTGCTTTCTATTATGTGCAAAATTCCGTAGTCAGTTCACGTACCGAGC
CCAAGAAGGAACAAATTTCCTTCTGCGCCTTGCTTCTTGTTCATGTTCGTCGTAATCATC
ATCATCAGAATCTTTATATGGAGTCATTGTGTAGGACTGGCAAAAGTTCCATTAACATCA
GAGCATATGATTCAAAAATTAGAGTGATTGCTGATACTAGAGTGAAATCAATGAAAAGCA
CTACAAACTGATACTATTGTCAAACGAGAAACCAAAAACAGCTCAGGTTGACAACCTATT
TCTGCTTTGTCCCAGCTGCTATTACACTACAGATGTTTGTACATTCTAACAATTTTGCCG
CTTTCTAGGAATTATGGCCTCAAATTGAGAAAAAAATATTTAGGGTGCCATTACTCATGT
CTTCCAAAGTCTTCTCTTAGCATGTTAATAACAAACTGATGAGCATGCATTATGGCGTAG
AAGCCACTATCATGTGACCATTTCAAAAGAACTTCCATTAATATATCTGTATACGAGTAT
ATTGACTTGTGATACTGTTATTGTTTGCACGCATTTTACATATCAGTCGTGGATCAATAT
CAAAGATGAATGAGTAGTACCAACATATGCAGATTTACAGACAACAACATTCTGCATGAT
GAAGTTTTAAATAAAAAAGCATACCTCCTCAAGACTGTTCAGGATATTTTCCTTAGCATC
AGATCCAAAACTTGCATTCCTGTCCTCTACAACAACACCTTTCTCATCCTTACTTTCATT
GGCCTTGTATCGAAGGGCGTGTTCAGTAGTCTCATCAGATTTAACTTGGTTTTTGCCTAC
ATCAACCAAATTCTTCCTTGGCTCCATATTATCCTGCCATGATTTTAAATATTAAAAAAC
AGATACCTCCTCTGTTCAAGAATATATCACATGATGCTTGGGAAAATACATTTTTAAAGC
CCTATGCACAAATTTCATATGATCAATCTGAGAGTTTTGCCACTTAAATTACGAAAATAA
CATATATTTTCTAAACAGCATACTATCTGAAGAGGGAAAAGGTAGAAATAAGATATTTTA
CACACACACACACACACACACACATATATATATAGCTTATACTCACAGAAACTTTTTGAC
GAGCATCTTTCCCATCCTTCATGGCTCGTTGTCTTTCCATAGGCTGCTTCTGTTGCTTTC
GAGCTTCATCCATGCATTTTCTTTTTTTCATTGTTTCCCGCTTTTCTCCTTCTTCCCTCT
GCCGCTTCTTAGTGGCCACATCAACTTCCCGTTTCTTTTTCCGTTCGTCTTCAAGTTTTT
GTTTTAATTCCTTCTCTTGCTTCAGTCTTTCGCGCTCTGCTTTTGCAGCCGCTTTGCGTT
TTTCTTGCTCTTTTTGTTTCTTCTCTTCAAGACGTTTTGCAGCTTCAGCTGCCTTAAGTG
CCTTCACCTTGACATCTTTTTTCACTGCAAGACAGCAACCCCAGTTCGAAATAACTAATG
CAATTAAACAGATACACTTACTGCATTCGCGGAAAAAAAAATACACTTACTGCACACTGT
TGTAGATTGCATCTTTTGTTTTACAAGAGGTACAAAAGATGTCACATTGGCAACAATATT
GCTAGGCTTAGGTTGTCTGTCAACATTGGCTTCACTCCTGTGTCTTCCGTTTCTGCTCTT
TAGTTCTGTTGTGCCTTGTTTGTCAACATTTACTTCACTCCTGTGTCTTCCATTTGTGCT
ACTGATTATTTCTGTCGTGCCTAATCTGCCATGAAGAGAACGGGATGCTTTCCCTTCTCT
CTTAACTGAAGTAGGGTGATTGTATTTTCGCTTAATGCTATCATTTTTTATATTTGAATG
ATGAATGAGCTCACTACTGACAGATTCTGCACTCAAGTCTATGTTTTTACCTTTATCCAT
GCATCTCATCGAAAGAGACGGAGAATTTCCATTGTTTTGACATAATCCAGTAATATCCTT
AAGTGCTGTTCTCTCAGAGGGCCGCTGGCATGAGTAATTCACATCCACAGATCCAGGAGT
CCTGTCTTGGTACTCATCTTCTTCCAGAATGCTGTTATCTTCATCAATTTGGAAGATTTT
AAGTTCAGGAATAGAACCCATATGTTTTGAACCAGATCCAGATCTTACTGAAAATTTCTG
GAGGCTATATTTTTCAACTGATGGAGTCAACGGAGTTTCACTAGTCTCTTGTCTGCTGCT
AGCATTTGAAGACCATGAGGCTACGTCATCAGAAATGAAAAACGAATCAAGTTTCGATCC
ATATCTGAAAGAGTCCATAATGCTAAGGCTGTTTTTTGGTGGCATGGTTGTCAATAGCTG
ATGCAAACTACTTGCTGTGTTGGTATTATACTTGTTTGGAGGATCTGAGCTGATGGTGCC
TAATTGGCGAGAATCATGGAAGGACTCAAATGACCTTTTTCCGATAATTGGGCTGTCAAA
TTGGCCAGGAACATCAAATCTCTCGAATACTGGCATTGAAATGGCAGCACCAGGCAGCAA
ATGTCCATTTGCATCGTAACTTTTATGTTTCCTACCACGTTTAACATTGGATTCATAACA
TAATTTCCTAGGAAACAGTGCATTCGGAGCAGATGCTTGTTCACCATGTTGATCTAAAGC
ATAACCCGGGAATTGAGTAAATGGCTCCCTTCCAGAATAGTTTTCTTGATTTAATATTGC
AATTGGAGATGATAAGCTATCCGTCTCAAGAGCCATTTCCTGGTCTGCCATACTTGCAGC
AGTGACATTTAGGTCCTGACCTTCTAAGCAAGTACCTTCCTGCCAACAAAAAGAACAACA
GTAAATACGCTGAGGACTTAATAGTAGCACACATAAAATAGCAAGTGCAATATAGCCTGA
TGAGTGGACATTACCCAACTCTACTAATTATAAATGCCAACAAAGTCAAATCTAATACTA
ACGGGTGCAGTACTACTGTAGAATGGCCATCAAATCAATATGGATGTTACAAACTTGCCA
GGCCATATACAGAATTTGTATGCTCATCAGTACAAAATCATGATGAAATACTCATGGATA
TTCCTATCAGCTATCCCTTAGAGAGATAATTAAAACAAGAAATAGAGAAGCTACATGACT
GGATTCGAATTTGTCAGACCAAAGCATCCAAAGAAAAGGCTCCACTAATAATGCAGACAG
ATTGAGCATTACCACTAATAATGCAGACAGATTCAAATTTGTCAGACCAAAGCATCCAAA
GAAAAGGCTCCACCAATAATGCAGACAGATTGAGCATTACCACTAGTTTACTACTTCATG
ACATATTTTGAAAGGAAAAAGAATACAACCGATTCTTCCGTAATAAATAAATAAACATTT
ATACTATTCAGAGAGGAAAGGGAACTGGTGGTCCGGTACACTTGCTGAGCACATACCTGT
TGTGTGCAGTTTTCCTCGTTATGAGATAGGATGCCAGAGCAATAAGGCAAAGCAGCAGCC
GTCGTCATAAACTCAACTTCCAACTTATTTTGTTTCTGTTCTTGAGAAGTTTTGAAGACC
ATTCCCTCAAATGCACTCCTGCTGGTGCTTGCAGTAGGAGAGTTATCAAGGACAACATTT
AATAGGCTAGTTGCATTTCTTCTTCCCCGTGAAGAATTCCCATCGCCACAAACGTCACTT
GCAGCATTTCCCCCCTCTGACTCCAGAGACATGCTCTTGCAAGATCCTGAACTCCTTGAG
AAGAAAGGACTCGAAGGATGGGATTTCTCTGAGAAATTTGTCGCGGTTAACATAGGACCA
GAAATGTCAACTTGGTGGTTCAGAGACAATGAATTTGTGCAAGGTGTCCTTGAAAGGTCA
AAGTCTGATCGGCGCCTTATTCTTCTTCTTTTAGATGACAAACTATCATTTACTTTAACT
CCATCTTGAACAGACCTCTTCTGGTCACAAGCAGCACTGCTTATGTCTGACTTGAGCAAA
TTAATTTTCTCATGCGATGCTGCACTACCTAAGAAATACTGAACAGAAGGTTGTGAAGAA
TTCTGCTTATCGTTTTCTGCTGTACATGAATCAACATTTTCTTTAACAACATTCTCAAGA
AGAGAGGTCTTTTGTTCTGTTCCTGCAAGATAAGAAACGATGTAAGGACATGGCACAATA
ACTTCTGCTACCAAAAAACTTAGCAAACATATATTCTACAAATAGAAGCATGGTACCATT
TTGTTGCAGATCTTCGGCCGAAGTTATACTGTTCCTTTCAGTTGAGTGCATTTCGCTGGT
TCTTCTAACTGAAGCACTGCTGATAACTTCTGGCACTGCAGACTCGTCTTTTTTGTTGCT
GACAGAAATGTTGCATGCTTTGGTCAAAGCTGAGAATTTTACCTGAACATCATCCAACTT
TCCTGAATGGCAGTTGACTGCATCATATGCTGCCTTCCCATTGAGCGTCTCATTTTGTGT
GACCGGGGAAGCAGGGCCAAATGGAGTTTCCACATCGGTCTCCTTGAATTCTAAAGATGT
TCTGGCCAACAAATGTTGCTCCTGAGATAAGTCATTTTCTTCAGATACAGAGACATTTAC
AACAGGACAACCATTGGAATGTGTGTCATTACTTTGTATTTCGAAAGGGGAGAGGCTTGT
TTTATAAGCATCATCCAAAGGACCAGTCTGAGGTTGAAGCTGCTCAGGGCATTCAACAGA
CTCCAATTGGGAGCAGTGGTTATCCACATCATTTACAGGTGAATGTGAGAGGTCCTCACA
GTCGGCCTCCTCTAACAGACCATCCAGCAATATTTGTGATGACGCATGAGCCCCAAAACT
AGTACCAGCTAGTTGGGTAAGTGACTGCAGAGTTTCACTGTATGGAGGATGTGAAACATA
ACTATCAGAGCACTGTTGTTCGAAAGACAAAGAACTCCAAGTGATGATCCCATCTGAAGA
ACTGTCAGGTCTCGTCATTCTTTCAGTATCTTCTATAGTCTGAGGTTGAATCTGCTCTTG
GCATTCAACGGATTCCAATTGGGAGCATTGGTTATCCACATCATTTACAGGTGAATGTGA
GAGGTCCTCACTGTCGGCCTCCTCTAACAGACTGTCCGGCAATATTTGTGAAGCAGGAGC
CCCAAAACTAGTATCAGCTAGTTGGGTAGGTGACTGTAAAGTTTCACTGCATGGAGGATG
TGAAACATGAGAATCAGAGAACTGTTGTTCGGAAGACACAGAACTCCGAGTGATGATCCG
ATCTGAAGAACTGTCAGGTCTCTTTATTCTTTCAGTATCTTCTACAGTCTGAAGTTGAAG
CTGCTCTGGGCATTCAGCGGACTCCAATTGGGAGGATTGGTTATCCACCTCAATTACAGG
TGAATGTGAGATGTCCTCACTGTTGGCCTCCTCTAACAGATTGTCCGGCAATATTTGTGA
TGATGCAGGAGCCCCAAAACTAGTATCAGCTAGTTGGGTAGGTGACTGCAAAGTTTCACT
GTATGGAGGATGTGAAACATGAGAATCAGAGCACTGTTGTTCAAAAGACACAGAACTCCG
AGTGATGATTCGATCTGAAGAACCGTCAGGTCTCGTTAGTCTTTCAGTATCTTCTACAGT
GTGCAGTGTATCGCTTTCAATCAGTATGCCAGTAGGATTAGGTGCTTCAAGTGAGCTGGT
CGGAGATTGGTCCCCCTTTCTAGAATGCACGCCAGTAAGATCAAGAATGGCACATTCCAA
AGCACTTTTCTGCTGCTGCTTCACTGGTGCACTGTAAGGGTTCAAATATCCTGATTCCAC
ACCATCAAGCAATAATCTGCCCATAAAACGAGGAACTTGAGAATAGCTGGTAGAAGATGG
GTCTTCATTTAAGGGATGTGCCTCAACAAGATCAAGATTGGCACCTTCCAGGGCACATAC
TGGTTGCTGCATCATCTGTTCACTTGCAAGATTCATGCAAACTGATTCAACACCATCGAA
TTGAAGTTTTTTCGGCTCAACTGATAGATAAGTTTCAGGGAGTGCATGGCACACACTGCC
TGTAACTTGCACTCCAAAAGAACTTTGAACAGAAACCTTGACATTATTATCAGAACTGAC
AATCTGGTTTTGAGAAGAATCTAACTGAACTCCTTGATTTCCAAGATCACCATCTTTACA
GCACATAACGAATTCAGCTGATCTATCCTGATTGGCATAAAAACCTTTCCCCTGACCTGG
CAACGAGGTCTTTGTTCCAGCATTGTTTTCACCATCACCACATGGTTTGGAGGATAATGA
TGCAGTTGTTTTGTTCGAACCCGCAGTTGCAAGTTCAGACCTCTGCATCCTGTCTTGCAT
AACATCATTGGTTCCAGTATTTGTCGCTTGACCCTTCTCACGCGAGCGATCTTCAATATG
CCGCTGCCTTGACCTGGAACGCTTTACCACAGAGAACATGTTGATTCCAGAACCAGCCTC
AACAACCTCCTGGTCAACTGAAACCTGCTTTTGCTGAGACACTTCATGTTGGTTAGTATC
TACCGTGTCACAAATAGTCTCCAGACCAGCATATCCATTTGGAACCTCCACATTTCTTAG
TGAAATACTAGGAACAGCTGGTGGCTGAAATACAGTTCTGTTGGTTGCTGGTGTAGTAAT
CTGGCTTCCAGAGAAAAGTAACCCCGGAACAATTGGTTTACCATTTAGCTCTACAAGTAA
ACGAGCGGTTCAGTTAACGAATAAAAGGTGTCAAAAGCAATGTGTAAGGATTAAAATCGG
ATATCAATGGTGAACAAAAGGCTAAATAAACAAAGAATCAGTGTATTTCCGGCAAATTTC
TGAATCACTAGCCAACCAGTTAGCAACCCATGAGTGTTTATATCATGCACCCTGCAGGTG
TGTTCCTCCGGGGTTCTAATAAACAGACAAGATGTAGAACCAACAGCACTAAACTGGCAC
ACTCGAGATTTCCCAATGCAACACATAAAAGGATTGCTGAGCAAAACAAAGCAGCTAATC
CTGTACAAAATATTGAACCATGCTAAACCAAAGACATATAAGATGGCCTGCTAAAATGAG
CCTGGGTGGTTATTTGCATTAAACTGCATCCGTAAATAAGTGGTACTGGTTATGTAGGCC
GCTAATTACGTGGGATTAACTACCAATCTGCACCTTTGGTGCTTGGTCTTAGGAAACTAA
GTAATTGCGAATTTGTATTTGTAGGAAGCAAATCTTTTGGGCTCAGGAAACTACTTGCAG
TTTTGAGGAAGCAAATCTTTTAACTAATTTTATTCAAACTTGCTTCAGATGCAACTAATA
CTAGAAGAACAAGTGCGCTTTGCTGCGGCCGCTTGTAGCTTCATTTAGCCTTTCTTCTCG
CAGATAACAACACGGCCGCAATCATGAAATCGCCGCAGAGTTACACAGTATGTCCCAAAC
TTACAGTACATCACATGAATAATGCAGGTAGTTTCTCTAACAGTAGATGGCAAGCAGGTG
GTGATGAAACATGAAAGCATTGACAATGGACGAGCAGACAACAACAGAAAAATAGCTAAG
ATCCATCATTGAGCCAGCAATATAACACGAATTGCACCAGCTAAAAGGAAAGGCTACTGA
AGAATATGAGCATATAGCATGGCATCTTTTAGTTCATTTATTCATTGACACCTAGAACCA
TTACAAGTTCATATCTGGGGTTAGCCAGGAAACAAAATGGTTTCTGTAGACACGATTTAG
AGGAGAAACATAGTACCTCACAAAGTCACCATCAAATCAAGAGGATGGTACCATCCGTGA
AGTTTCTAATCATAGCCTGACAGAAGTCTGTTCCACTAGCTTTCAAACACTCATGTTTTC
TTGCTCCATTATATGCCGCAGGAAAAAGTAGTATAAAGCATACATTGCCCAAAATAAACA
TCTTAATAACCAAATTAACATTAGGACATTGTCGAATCTCGTTAGCACAACCAACATGCC
CTTGGCATGCATGGCCATCGGTCCTACTGAGATTTGTTGCAGGGAAGGTAGCACGAGCAG
TTGGGTATAGTCGCTTGCACAGAACACCATACTTTCTCCTCGTGTGGCTAATACGGGGAA
GTCTAGGCTTGCATCACCGAGGAGCTACTCAGTCCCCTACCCCAACCCAATCCAACCCTG
AGGAGCGAACGAGCAGAGCGCTAACGACCATGGGGAGGGAGGGAATACCGGACGCGCACC
TTGCGGGCCGGCGGCGCAGGAGGGGAGGAGCCACGGCGGGGGGCGGTGGCCGGCGGCGAG
GAAGGCGCAGGCGAGGGACTCGGCGTAGGAGTCGACCTGCTGCCGCATCTGCCCGGTGAC
CCAGTCCCGGCGCTCGAAGACCTGCATGAAGAGGTTCTCCATGGTCGGCTGCCGGAGCGG
TGGCGGAGGCGGACGGGGGAGGGGGGGCTAGGGTTTGGGCATGGAGGTGGATCGGCAGCG
GGGTTGGGGGAGAGGGAGATGGGGAACGGAATTTTTGAATCGGGGCGAGGGGGAAGAGAG
AAATCTGATGAGCCGGCCAGCCCCCCCAAGTGGAAGTGGGTGGTGCTCCAGTGCCAGCAG
GTGGGGGTTTTCGTCTTGGCCAGTACTACGCGCCGGTCGGCCGGCTAGGGGTTCGGCCAG
TCGCTTCCGAACGGTCGGATGCAAGCACTGGTAACGGTCAGATTAGCCTTATCCCTTCAC
ACAAAATCATTTTCTTTTCTTTTTTTTCTCCATGCGAGCACTCCTGGCAAGAAGGGAACG
ACTCGGCACGTGCGGCCCGTACACGCCACCAACCGTGCATCTCTCGGCCATGGCCACGGC
ACCGCTTTCTCGCATGTGTTAAACAAGATAGATAAGATAGGATTTTTGTTAATCTTTAGT
TTAAACTCTTCTCTTCAACTCATAATGTATAACTAGCAAAAAGGGCCCGTGCATTGCAAC
GGGAAAAAAAAATATCACACGCTTTTAATTTTTTTATAATCATTTTGATTTATTAAAATA
ATAAGCTAACTAACTAAT