Contig Data
morexGenes
Links



Map Locations of contig_46392 (6850 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_46392

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_62281 1 1418 bp MLOC_62281.1 Available Available LOC_Os02g31160.1, FRAME:+1, EVALUE:4e-40, 13102.m03409 protein transcription factor, putative
MLOC_62282 1 460 bp None Available Available None
MLOC_62283 2 1770 bp MLOC_62283.1 Available Available LOC_Os03g58390.1, FRAME:-3, EVALUE:3e-152, 13103.m06413 protein zinc finger, C3HC4 type domain containing protein, expressed





CDS Structure of MLOC_62281






CDS Structure of MLOC_62282






CDS Structure of MLOC_62283






Contig Sequence (6850 bp)

>contig_46392 6850 assembly3_WGSMorex_rbca.fasta
GGTTGAAGTCCGCGGTGGCGTGCGCGGCGGGAGGGGGCGCCTGGCGGCGGCGGCGGCGGC
CGGGGCGACAGGGGAGCCGGCGGCAACGGCTCTGGAGCCCAAGTGGGCCGCGGTGGCGGA
GTACTGCCGGCGGCATGGCGTGGAGAGGGGGGCCGTGCAGTGCCGGAAGCGGTGGAGCAA
CCTGGCCGGGGACTGGAAGAAGATAAAGGAGTGGGAGCGGGCGGCAGCAGGCGCGCGGGA
GCCCTCGTTCTGGGCCATGCGCAACGACGCGAGGCGGGAGCGCCGGCTCCCCGGGTTCTT
CGACCGCGAGGTGTACGGCATACTCGAAGGTCGAGGGCGGGGGGTCGTTGTCGGCGGCAG
CTCCGGTGGTGACGCTGTGGAGGAAGTAGGGGTTGGGCGCATGGAGGAGGATGATGATGG
GGAGGAGACGGGGGAGGAGGAGGAGGGGAGAGGGAAGGGAAAGGAGGTGGCAGTGGCAGT
GGCAGTGGCAGTGGCAGTGCGGGAGACCGTGTTTGACAGTGGCCGGCCTGCCGGGGAGGA
GGCCCTCTTCTCGGAGGACGAAGAGGAGGAAGATGCTGAGACGCCAGAGGCGACGCCGGC
ACCACCACCGGCTGTCATCGCCTTGCCGATTTCCGAGAATTCGGAAGCATCAAGGCAACA
ACAGAGCGCGCAGCAAGGCACAACGACAGACAGGCCAAAAGGGCAGCAAGGTAGCAACAA
GACAGCAGGCTCACCGACATTGCAGCAGCAGAGCGGGCAGAAGAGACAGCGAACCGGCGA
CGGCAGTGAGCCCAGAGCAGAAGGCATGGCAGACAAGCTGCTGGAGATCCTGGAGCGGAA
CAGCCAGGCCCTAGCGGCGCAGCTGGAGGTGCAGAACGTGAACTCGGAGCGCGACCGGGA
GCAGAGGAGGGAGCAGGCCAACAGCCTCGCCGTGGTGCTCGGCAGGCTCGCCGATGCCCT
TGGCAGGATCGCCGATAAGCTCTAGCTACCTGGAGCTGCATGCCTGGACAGAAGAAGTTG
GGTGTACAGATTGGTATAGGAGGATGATTGCTCTCCTGGCATTTGATTCCTTTTTCTCTT
TGCGATGAACTGATTCCGGAATTCAGTCCGGAAGCCAGGGTGGAGGATTTATCATGTACT
GTATGTAGAGTGATAAGGTTATATATACTGTCATTCAGGTGATCTGATTCTGAACTAGAG
ACATCTTGATTGTGTATGCGTCGTGGGCTGAAATGAAAATATGTATCCTTTACTGAGTAA
AAGAAATGTTTCTAAGTTATAAAATCAATTCCTTCGAGCGGGAATTTTGCAGACTCGCTT
GTGTGGCACTATGACAGAAAGGTGCTATATATTCTCAGTGAAATCTGCTTACAGGCTCTA
TATTGATATATATATCTTGATGGTAATACTGGGTGCCCCTCCTCTAGCTCTAGTGTTGCT
GAAAAGCCTCCGCCTTGGCCATGTATCTGGAGGTTTACTGTGCCAAGCAAGATGAAGCAC
TTTGCTTGGAGGTTGGCACATAACACACTGGCCGGTAAGACCAACCTCGGTCGAAAGGGG
ATGGATATCAACCAAGCATGCTTCCTGTGCAACAGGGATTTCGAAGACTGGGCATCTGTT
TTTCAAGTTCAAATTACTTATGGGGGGAAGGGCAAAACATTCAGTAGAAGGAGCACCTGA
AACTGTTGATGGTGCTTCCTATGCAGATGCCGGTAACCAGGTCGGGGCGCGATCATTCAG
GACAGGTGCTCCAGGAAAGTAATGCAATGGAGTTGAAGCAAGGGATGGAAGCTGAAAGCA
CTAATTTGTTGCCCCAGTGTGTGATTCTTTACGACAAGAAGACTTTTGCTAGACTTCATT
TTCTGAATTTCAAACTCATGTACTGTCCCAGAACATGTAATGCTGCTCCTCATCCCCTAC
AGCAATGGGCAGCAAGAGGATGAACCAGCCCAGTTTCTTATATAATAGTTTTCCCCTGTG
CATGATGTAATGTCTCTAGTAGTTAAATGCAAGGTTGTGTATTAAAGAAAAGATCAGCCA
ACCAATTTGGCCGATTGGAGCTACAAAGGCAAAGAAACCACTTGCAAGATGGTATCCATC
AATCAACTACCCCACAGATGACCAATTTCCAGTTGGGTGAGCTGTTTGTGAACGCCAACT
TGTGACATAGCTTACAAATAAAATAGCACCACAACATTACAAAGGCATATACCCTCAAGG
CTTCAGGTACTGTTTACAGCAGCACTCAACACAGGATTACAAAGCGCATAGGTACAACTA
CTCCATCAGGTGAAGAAAAAATTGGTAACGAACAACACAAGTAAATCGAACATCTATCTA
CATGTTGCAAGGTGAGCCGAGCCTCGCAAGGTTGGCATCAATGCTAGCACCGACCAGAGG
GCTCTGAAATAGACGACTGGAATGAGGCGGGACTTGTTCAGACATGAGGCGGCGCTCTGG
ATCAGTCAGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGGTGGTTGGTGTGGGCAGCTCC
GGCCTGCTGTAGAACACCGTCGTGATGAACCCGGTGGCAGGGGAGCCCACGGATGACCGC
ACCCAACCGTTCGGTCCTTTGTCGAGATAGCATTCCATTATGTCATGTAGGGTGATTGCT
GGGTCCACTTTCTTGCCAACGCACATCAACTCCACCTGCAAGCACACCATAGGTCGATAC
ATATGAGAAATGTTGAAAGCTATCACTTGCTAGGTTGTGATGAACCGAGACAATGCTTCT
CTCATTCTATACATGCTAAGCAGTGGCATTCACTCTGTTGCTGCATATGAATGATTACGC
CGTGAAGAGTACGGCAAAAGGATGTCCGACACAAATTCGGACTGCAAGCTCGGAACAATA
ATTTGAGTTTTCCCTCAGGTCTAGCTTATCACTGACACTGTGAGAAGGAAAAACATACCT
CAGCTTCACTTGAAAGATTGAGTTTCTGCACAAGGTACTTTTGTATGAAGGAAGCAGGCA
ATTCGACATCCCTAGGTCAATGTGATAAAGGCGCAAGTTAGCGCAAACTTAAAGATATTG
TGTTTGTACATGAAACAGTAGCCTGGATAACTCACTTGATCCTCAAAAATTTTGTAGGTA
GCTGTGGTAAAGGAGGTTGTCCCTTCCTGAAACAAATGAAAACACAAAATCACGATTTCT
GTGTTTCCTTCAAAAAGTATAATAAACGTCGTAAGAGAAGTCTAGTGCTTCTTACTGGTC
AAAAGCAGCCACTAGATAGAACCATAATGCTTGCAATCTTCTCTTTTTCCTAGGTTGTTT
GGCCTTGAATATTTTCTTTTTCCCCTTCAGAGTGAACACTTTCTTGCTTCCAGTCTTCTT
CACTAGATTCTCCTTTCTTGTCAGGTATTCTTTGGACTCCAAGAAGCGGTTCAAGAGGCT
AGCCTTTGCTTCATTAGAAGGAGCACCATGCTCTGGATCACCAGACTTGATTCCAGTTCT
ATTGTCCTCTTCGGAACCTGATTTGAGAGATTTTTTATTTTTACCAACTCTAATATGAGA
GGCCAAAGGTTTCCATCCTCCAACTTTCTTTGTTGCATCTTTACTGCCCTGCAAGGTAGA
ATACTGCATATAAATCATGTAGAGCACGAAAAGAATAACTAACCAGATATGATTTATATA
TTCAAAAAGAATGAAACCCAAACAAACATAGACTAATACATACATTGCAGGGTCTGAACG
GTGTGGACAATACTTCCCTCACAAACAGTTATGGCATTTGATGCATGCACAAATGACATT
AAGGTTCCAACACAATTTTAACGGCACTGTGCATCATATGTATAGAAAACTAATAAGTGT
TCAAGACAAACACAAAGACCGTGAATCTAAGTAATAAGATTTCATATGTGTATAGAAAAC
TAATAAGAGTTCAAGACAAACACAAAGACCGTGTTGTGCATCTATCCTAATGTCAGCAGC
GGATACATACATGTGTACACACCGTAAATCTCACCAAGGTTGATTGAAAAGAGTCAACTA
AATCGATGTTTGTATGATCCCTTACACCAGTAGATGTTGATGCTACTCAATTACGACCTA
TTATGATTAAACAAGAAAAACTCAAATGCACATAAACACTTCAGGTACCAAACAAACAAA
GGATCAAAGGGCCTCATGCTCTATTCATTTAGCATACCAGACATACTATGTATAAAGAAG
TGCCCAGAACCAAGATGTGCCCAAGAGAATAAACTCAACCGATATGTTTTAGCCCCAAAG
TAGTCACATAGTGCTGCTACGAAATTGCAGCCTTCCGATTAACACAGAACTACATACCAA
AGACAAGCTGCGTAAGCACGAAGCTTTTGTTCTCCTCTTTGTAAGGCATTTCTGTATAGA
CACCCGAGGACCATGGACTGTCAGTGAAGATAGAGATCGTTCTTTCCTCTTGGCAGGTGA
TGCGAACGGTGATATGGCTTCTTGGTCCACAACCTTCCGTCTTTTAGAAGGAAATATCTT
TGACCTCACATATTGTAGGCTGTGATCAACTCTGGACAGAAAATTGATTGACATGAACCA
TAAGCTTAAGTTGTTTTTAAAAAAAATGACAATAACGTCTGCTTGTGATATGTAGATTGA
GACAAACCTGAGTTTCTCCTCTGGAGCACAGCCTAAATCAATGTTGCAAGTAGGGCAGTA
GCAGATCTCCTTATCGATAAACTCCTTAGATATGCACTTTCTGCAAACTGATCAAAGGTA
TAAATCTCAATGGTTGAAGCCCAAAAATGGAAGAACCAATTAAGATTTTACAGATAATTT
CTGAAGGGCTATTTTTCACAGTACCCTTAAAAGGCTCAAATACACAGAAATCTAAGAAGA
ATAACTGAAAATGCTCGCTCCTTTCCAAAGATAGATGGCAAACTGCTTTGCAATCTCCAA
TACTCAACTTTAACCATTATTTTTTAGGGAAATACAAGTAATATATTACAACGAAGTTAT
TATTATGAAACTAAGTTTCATGACAATCAAATGGTCTAGTGTACACCTAACCAGCCTAAA
TATTTTTTCCTGACAACTAATGAAGTTGAAGATGCCATAGTGGATCCACCAATAACAATT
CCAGTTACTTCCTGTACAGTCAGCTGGTGACCTCAGTGTCTCCTGTTTTTATATTAACGA
TAATACTCACACGAACAATTTCCGTACGACACAGTACTTTAAAAGTCTAGGGAGACAAAA
GTCTTCATCATCCACGCCATTGACCGCCACCAAAATGCTTCCATTTTGTCCTAATCACAA
TTAAAATGGTTTAAGAAAGCTATGCATACAGGTTTATTTAGTGAAATGTACCCACAACCT
CGGTTTGTAGGCTGAAAAAATTAACCCTTTCCGGTGCCCTGGCAGGCTCATGACCTACGA
ACACAAAAATAACACCTAGGCGTCCTATCACCACAAATCCCTAACAACCATTCAAGTAAC
TATTAATTCTGAAACAAGTTGCCTACAGCCTCCTGGCAAACCATAATATTTCACTTGGAT
CACTGACCATGCTCAAAATCTCACTGTCATTCGAGCACCCAAATCACTCATGTCATTTCC
TGAATGGGCGAAACCCTCACAAATAAAATATGGGCAACTAACCGAGACTTGCGCTCCCAG
AAATCAGAAGCCAACCTCTCTGCAACAAGCTAACAGAGTATGTATGTACTGAAGCTACCA
CCTTTCGACACCAGACATTCAGAGTAGCATACCTCTTGCATATGACTTGTATAACCCATA
CAACGATGTGAATGACAACGAAAACGCCAATTCTCGGACGAGACCAACCAACGCATCCAC
CCTCCACACGCAGCACCCAAAACCGCACACAAATCGCAGCGCGTGGGAAAGTATCGACGC
ACGCCGCCACCTTTCCACGCATCGCCTCACACGCGCCGGGGCCATGGATCAGCGCGGCCG
GCGCAGATTTGACGCACGGAACGGCCGAAGCAAGCAGCCGCCTTCCACGCCATAATTCGG
CCACATCGCGCTACGGTCCATGGAGCCGGGAGGGAGGGAACGGGGGCGGTGGGGGGGAAC
TCACAGGTGTGGAGGCACTCGGTGATGGTGGCGGCGTCGCGGAGCAGCCGGCGGCAGAGC
GGGCAGGTGAGGCGCTCCACCAGGGCCGCGCGCTTCACCATCACGACGCCCGGGCCCGCG
CTGCCGACCTCGCCGTCTCCTCCTCCCGCACCTCCGTCGGAAGGCGCGGGGCACGCCAGC
ACGGCGTCCTGCATGCCGGCCGGCGAGGGCTTCTCCTCGCAGCTAGCTCCGCCCCTTCCC
CCCCCCCGGACCGGACGCGAGCACGAACTGAACCTGGAACCCACCTCCTCTGCGACAGCG
ACAGTGACGGCCGCTGTGTCGATCGATACCAGCCTACCAGGCGACGTGTCGGCCGAGGTC
TTAGGTCGCCGTGGACCGAGCCCACTCACTCCCACCGTGGACCGAGCCCACTGACCCATC
CACCGCCCGCCACCGGCCCGGCCCATCAACCCGCAGCCCCCTGCGACCACAGCCTGGCTG
TTTTACTCCGTCTGGGCTGGAGTACAAGGATACCGTGAAAGAGTTCCTTTGTGTATTGTC
TTATTTCCTGAGAAATTATCTTTTGTACTTCTTTCGTTTCAAAATTTTTGTCTTACCTTT
GTTTAGAAATTGATGTATCTAAATACTAAAACTTAACTAGATACTTCCTCCGTCACGGTT
TAGAAGACGTGTTTGGAAATTTTCTGAAACCTAGGTGGTTATTGATTGGTTGTGAGATGG
TTTAAAAATAACATTCACACTACGCATGCATATAGAAGTAGTACAATGAAGTACTAATTA
GCTGCTAGGA