morexGenes - Barley RNA-seq Database

Contig contig_46350
Source Contig contig_46350
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46350 (8715 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_46350

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62249	2	2462 bp	MLOC_62249.2	Available	Available	LOC_Os03g42320.1, FRAME:-2, EVALUE:0.0, 13103.m04556 protein Sec1 family transport protein, putative, expressed
CDS Structure of MLOC_62249

Contig Sequence (8715 bp)

>contig_46350 8715 assembly3_WGSMorex_rbca.fasta
GATGCCTCCTCTCGACCCATCGACGGATAAGTACGTGTAATCATCGAACTCTGATCCCAA
CGCCTATGCTCAAGCAACACTTGTATCGTCCATGAGACCATGACAAGACCACAATATGAC
GGGAAAAATTGCAGATTATGAGTAACATACATGACTTGCTGGTGTACTCACTCACGATAG
CAAGTCTCTCTATCAGAGCATATGCTGGAGGAACGGCTGGGATTGTCTAACCTCTGACGT
ACGTCACCTGGCTTGTTGTCGCTGGCATGTGGGCCAGCCGGGTAGATGGTCCACATGTCA
GCCACCCAAAGTCAGGGTGGTCTACTTGAGAGGATCTGCACCTGCAGGAGGAGCATTGTC
GGTGCCATGTTTCCGTGACAGAATTAGTGATGTCATAGTTGTCATACAAGCAAGAAATGG
TGATGTTGTTGATGGCACTGAAGTAGGTGTACATGGTAAAAACAAGATGTGCACAGAAGC
AGCAACTCAAATATTCGAGCATATCTATACTCGTTACACCAAGGATGATACCTTGGCAAA
CTTAAGAAATGAATTACTGTCCGATGAATCTCAGTGGTAATCCCTTTTGTCAATACATGA
ATATCCCTAACTTGATTATTTTTTACCTCATTCTCGTTATGTTAAATTCATTACTGTTGC
AGATGATCAGAGCAACTCTTTGTTGTGGAGATGAATACCCACAGGAAAAGACGAAATTTA
AATTCATTACTGTTGCAGATGATCAGAGCAACTCTTTGTTGTGGAGATGAATACTCACAG
GAAAAGACGAAATTTAAATTCATTACTGTTGCAGATGATCAGAGCAACTCTTTGTTGTGG
AGATGAATACTCACAGGAAAAGACGAAATTGACAAACCAGAAACTTACATAGCCAGGGCA
AAGGAGTTAGCTCTTCTTCTACACTTCTCCGCAAAGTAATGAGCAAGATGAGGAGGAAAA
CATGAAGTTGTCATCCTTATTGTCCCTTTATGGGATGGTCTACGACATGTTCATCAACAA
ATTAGGTCCAGGCGCGACCTTTAGTTGTCTAGCTCTTTAAACATGATCAAGGAGACGATA
CTGAAAACAAGTGACCACACGGTTAAAATTTTGTCACGGGGAAAGGCCATCACAAAGATG
GTCATATCAATGATGTAACACAGTGGCGGCAGGTTCATCAAACAAGTGGATCTTAAGAGT
TTGATAAATGCGTTCTCTAGTGCTTTGAACATTCCAAAACTCGACTAGACTATGGTTTTC
AGCTCCACCCCAACAGTTTTGAAACCACATCGAAGCTTGTCACGTGTAATCTTGTGTCCC
TCGTGAAAGAAGCAAAACAATTGTATGTCATGGTGCCACCTGCCTCTGTGATTGGTTGAT
TCTAGATATGGCTAAGACTCCTCGTATATATACATTCACTGAATAGCTATTGTTCATTTC
CGTATATTTAATTAGCTCACTGCAAATGTGTGGTCAATCTCCTCGTCGTGAGAAAGTGTT
ATGTATTGTTTGTGTTCGTGATTATGATCATGAAGTGAAGAATTGATGGACACCCAGCAA
TAGAAGTGTGTCTCCGAAATATGAAGTTTAAGAACTACCCAGTATTGGTGTGTTTGTGAA
ACAACTACAATTACTCCATTTATTTCTTGCTGCATGCTCCTTTGACTTTTACTTATATGT
TGGCTTACATTTTTTTTTCTAATTCCAAGTTAACAATACAACTATGGTCGAAGTCGATAG
CAGTTCACGCACCTCATTTAAAATTATTTGCTTGACAAAAACAGTTGAAACAACATTGAC
ACATAAAAAGAAAGAGATGTCAAGTAACAGTCTCAAACTGACCTCAATGACTCCCCTTAG
CAACTTGGCAGGGAAATCTTTTGTTCTTCTGGAAGTCAACATTCAACTCATACTCCTTCG
ACTTACCATCCAACTAAGTACAGGCAAATTAGTTATTGATTTGATATGCAGCCAAAGTGA
AAAAACGAGTAATAACCTGTAAAAAAAAAACTAGGATACTTAATCACCTCATTCCTAAGA
TATTTCAGGAGTCGGGTTGCCAAAACAGAGATGAGTTCTTGCCACTTGTACAAAAGGGAG
CTCGGGGCTGTCTAGGCAGTTTAGAAAATCTGGTACGACCAGAAAGAACGGTGCAGTCAG
GAACCTATTGATCCAAGAAAGATGGTGTAGTTTGTTACAAAGAGGTTAGCTCCTCTCTGT
AGACAAGAACAGTGGCAACGAGAGACAAGGGAAACAAAAGTAGAAGAACAACAGTACCCT
GAAAGTCTGATATGCCTACATGATTGATATTATGTTCATATCCTGCAAGGATAATGTGCG
CAGAGTTCACACTTGCAGCAGAACTTTGGTGAAGTTTGCCAGAAATAGCAGTAGGAGGTC
CAAGTTTTGGAAAGGTGACATGAAATGGTTCAGCTCTCCTGCAGAAGATAGGTCATCAAG
ATCCAACCTTGCTATCAGGCCACTTGCCTGAACAAAGACAGCCATTTCAGCTCGTATTTA
AAAGATGCATGCATATTACAAGCACAAAGTACTTTCATCAGAATGTACATATAGCATTGT
GAACTTGAAAGCAAGAGGGGGAGAGAAGAAACAAACCTGCATAGTTTGACCCGCAGGCAT
GATAAAAGGAAATGACACCAGAGGCCTATAGTAACAGTGGCATGCATATTTTCATGACTT
CCACCTCAGCATATGGTGTATCAGCAACCACTCGAGAACAATCCACGACCAAAAACTGAA
GAGGTTTGATGGTGAATCAATCAACAGCTTGGAAGGATCATGCTCTTTCAGTAATATTCA
GAGAACATAACTAATTTATGTGTTTTTATACAATTTGCAGTCACAATTACAACTGAAACA
ACCCCTATAGTACGTAGTTCTTGAGTTAAATATTCCCATAAGCGAGGATTTCTCATATTC
CTTCAGTTACATACAATGAAATGAATTCCATAGGCTGTGCACAAAATAAGATGGTCTTTC
TAGCACTTTCTCATGGAATATCTGTAAAATCAGCGTGATAAGGTTCTGAAAACAAAGAAA
CTAAAAATATGCAGCAAAATAGTATTCTGAGGGATGACATTGACATCCTCGCAAAATGTG
TCATTACATACCAATCCCTTAACTCCACAGAAGAAGATACATTGTACATTTGTACTGCAC
ACATCACAACTCACCTGAAACATACTCTTCTTTTTTTGCGAATGAAACATACAATTGTTA
ATGCCTTACTATTCCAGGGCAACTAATTCATTGCTACATTCTTTTAACTAATATGCGTTT
CTGCTGGGTTAGCAACTTGTATTCATATGTTACTATTGCCACAGGCACACAGAAATCCCC
AGAGTGGTGAACCATGCATATTGTCCCAGAAGGAATTCATGTAAGCTGCATAAGACCAGA
AGGATATGTACTCCAGCATGTCTATGCATAACCATTTGACTGATATTCATAAGAAACACT
AACAAACTCAATTATCAAAAAAATCAGAACAGGTGTTCTAAGATTCCATGAACTGATAGT
AGGGGTGTTCAAACAAGATTCTGCTAACATTTCGCAAAAGGGGGCAAAAGAAAAAAAGAA
ACAACAATAAACCAGCATACATGGACATTTCAACATATTGGACTTCTAGAGCAGTTGAAT
CTCGCAAGAAATCTTTGTATTGATAACTCATTCAAAGCAGCGCCATAAATCCGACAACAG
AGAAATTTGATACCATTACACATTAGTCTATGCAGCCTGGATCACTCCTTAGCATCAAGT
GTCGGCAAGAGACTATTTACTGCAACCTGTGAAGCTTCAATCCCACCTTAGCATCAAAAC
ATCTGGTAAGAGCATATTTTTACTGTTGTGGGAGGTTGCTGCTGCCACCACCCAATCCCG
CTTTCTGTCCCAATTCTGCGAGTTGCTGAATAAATTCCACACCATTGAGAATCTCTGTTG
CTCCATATATGACATGCTTTGAAGGCTGTGAGCGTTGCCCTAGCTCAACTAAGCTCCTAT
ACTCAATGTAATTTCCGCCACCAATCATGAAAACAATTGCTTCTCTGAAGGGTCCTCTAA
ACTGCCCACCAGTTCCTGATCTAGGGGCCCGTGGGTCGAACAATAGGTAGTTGTCCACCT
CTGGGTTTGGTTTCCCTTCCATGAGGGCTTCAACAGTCCTAGTCAGGGCCAGCTGCCTAC
CATCCGATAAGAGATTCTTCACGCCTGCTGTCACAGCACTAATGGACTGTCCATAAAGCT
TCTCTGCCCAATCAACAATGTTGCTCCTGCTTGCTGTGCTTGACGCGGCAGCAAATTGCG
TGTTCAACGACTTTATCCTCTTCACATACTGGAATGCAGACATGTCTACTTCTGACTCCC
GCAGCGCAGCCTCAACCTGCTCTAGTTCAGATGCCAGTGGCGCCTCAAAGGATAGCAGAT
AGGTGACAGCCAGCCGGAGCTTATCCTCCTTGGTGCCCTTCCCTCTGAGTAGACTCAGCA
GCATGTTCCGATCCACAGTACCATTCACGAGCATATCATTCTCGCACTCATAGTATCCAT
CCAGAGACCTCTCCTTGATGTGCCCAAGCAATGCAGTTGCAATATTCGTGTGCTTATCGA
TCATCTTCTTCCGTTCGGTCAGCTCAGGGAGTGAGTTCACCGCATTCATGAGGTGCTTGG
TGTTGCCAATAAGATCTGTTCCATCAAACTCAACCCCATCCCTACCACCACCCGTGCGCT
GGTTCACCTCATCTACATCCTGCTTGTACTTGGCGAGCTGCGCTTCTATCTCCTCGGCCA
CTTTGGGAAATGGCGACCAGCTGTTTGCCACCCAAAATGGGTCAGAGTCATCCAGATCAT
ACTTCTCTGTTGGCAACCTCAGCTTGTTGAGCTTGAAGCTCAGCACGTCATGGACCAACG
GGCGGTAGCTCCAATCGTGCTGTATCCCCACCGACAACTCGAAATTCCTGTCAAACAGGC
AGAGGACCGGGCGCTGGAACGACGAGGCGGCACTGGATGCAGCCTCCGTGAAGAGGTTTG
GCTTGGCCAGGAGGTGATCCCGAAGGCGGGCGTCCAGCGCAGCGGCCACCATCTCTGCCG
GCCCGCCGCGGGCGCACCTGATGATAGGCACGGCGCCGAGCGTGGCGACGACGCAGAAGA
GGCCGAGCGCGACGGCCTCGACGAGCGCGGTGATGTCGGAATCGGCGGCGGCCGGGTCGT
TGAGCGCGACGTAGGCGCGCGGCTGGGCAAGCGAGAAGAGGCCGTCCTCGAGGCAGACGA
AGTCGAGGTACTGGTCGGCGACGCGCGCGACGCGGTGCGCGGAGCGGGACGCGGCGGTGG
CGGCGGCGAGGCGGTCGAGGACGGGCCTCGGGACGGACGTGGAGAAGTTGACGTGGAAGG
AGGCGTAGAGCCCCGCGGCGGCGTCGGCGGCGATGCGGTCGGCGTTGGCGGGCGTGGGGC
GGACAAGGTAGACCGCGGGCGCGTCGGCCACCTGCTGCCGCGCCTTGTCGATGTTGAGGT
GGAGGGTGACGCCGTGCTTGCGGAGGTCGCCGACGCGGAGCACCGGCGAGAGGAGCGAGA
TGCAGGCGCCGTCCATCACCAGGATCTTGTACGCCTCCTCGTCCCCCTCCCCGCCGCCGT
CCGAGGACGGCTGCTGCTGGTTCAGGTGGAGCATCCGCGTGATCAAATCTGGATCAGAAA
CGCGGCAACAGAGCTGTTTGTTAATCAGGAGGGGGCGGACAGCCGGCGGTGACGGGCGCC
GGGAGGGGGGGTGCTTCGGAGCTTACCCAGCTGCTTCTTGCGGAGGCTGAGCGCCATGGC
GGTGCTCCGGCCGGCGACCACCGCGGCGGATCGGATCTGGGAGGGGAGGTGGGGTGGGGT
GGGGTGGGGCGAAGGGAGGGAAGTCGGGAACAGAGAAGACAACTACCAGCGGTTTGGCGA
GTGAGATTGTTTTGTGGGCTGCCACCTCACCTTGGGTCCACATGGCAGCCTCGTGGCTCC
TTTCTCTTTTTCTTCTTCGGAAATCCACCCATTTTATTCAATGGAATGAAACCACAGCAA
GCAAACGTAGTCATGAAGGAGCTCGCCAGCAGTCTAAGCGATTGACCACACGAATGCAAC
ACATGGTTGAGCCATACAACTTTTATTTTTTGGCAAAAATTATCAGATCTATCATGAAAT
TTCATCGAAAGTACGCAGCATCTTAAGTATAATAAAATTACATCGAGATTTCGAGAACAT
CGAACGACACTATGAACGCTAGAAGAGCCACCGATACACCACTGTCGTCGCCCCCTAATG
AAGCCAGCTTGACCTTTTCAATGATAGCCGGGAGTCGTCGTACACGTGCCCTAAGGACCA
GGGCTCGGGAGCCGCATCTGTCATCATTGAACCCTTCTATAGTTCTGAAACTTCTGACAC
CACATCTCATCTTATGATGAGAAACCCTAACCTCACCTCCCAACGAGACGGCAAGGATCT
ACGCCGAACCTCTGTCGACTGCGTTTAGATAGATGAATTCAAGGCAGTGATGGAACGAGA
ACTTTTATGAAGCGTGGGCAAACTTGAGCATTATTGTCTCGTCTCGGAATCAATATCAGA
TGTTCGGATACACAACATATAAAATAGGCCCAAACTTGTGAACCACAAATCCACATGAAT
AATGAATTCAAAATATAAAAATAGGAGATGTGCAAACGTGTTTTTGAAGTAAAACTGATA
TATAACGCATTATATTTAGCTTTATAGTCCAAACTATAGTTGAGACTTGATAACGGAAGA
AATAGAACCCATCCGTGCTTAGAACCAAACTCACCATGTTGCTCGAAGATGATACAAGAT
AAAAAAATTTGAATTTATGATTCTCATAAATTAAGTGTTGCGATTTGTGAATGCGTTCAC
AGTGAAGAGCTTGAGAAAATATGGACCATCAGATAGAACATACCAATAGTGTGCTAAATA
AAATCATGAGGCAAATGCCCTTCCGAAGACTTCACTGCGGTGAACATTAGTGTTTTATCT
ACTAAACAAAACATCATCATTTATAAAGTTCATTAATTTGAAATTTAAAGTTAAGAATAG
ACTGTATAGAACGAATCCATAAAAAAGGACTAGGCATATGAGGTTATGATCATCCTCGAT
GGTGAATTCCCCACCGTTTGACCTCAAAATTAAAGCCCCAAATCTAGCAGTTTTCAAAGC
AATTAGTAATCTCATCTAATCATAGCAAAAGGGGGATGAGACGACGAGTTTTTCGAGTAT
GTAAACCATTTATAGTGATGGATTCACTCTGCACACCGGTCGCGCACCGTGCTAGCCTCC
GTTTGCCGCCTGTCTGTCTCACCTTGAAAGACACATAAATTGTCAAGATCTCGAAGGAAG
CAACAGATCTGGGAACACAAACTCTCATAGATCCTTCGTTGGTGTCGGATTGAACCTCGT
TGAGGTAGAGAGAGACCGAAGGTACCTTATTCGAATACGTCATCATCACCACCACCCCGT
TGTTGCCGCCTGAGAAGCAAAAATCTAAGGCAAAAAAAGACGAGCATGACCTCACTCCTC
TTGCTACCGACAAGGCCACCAGGAGGGAAAGAGGAGGACCGAGGAGGTGACGGAAGATGT
CGTGGCGGTGGCTAGGGTTATGGAGGCGGCAACCACATTTAATATAATGGATAATAGTTT
TACTATAGTCTCTTGGTAGGCCTAGTTAATTAGTCCATTTCTAGAATATAGTCACACGTT
TACAGTAGGCCTAATTAACTAGCCCATTTGTTTATTATTATTTTCATCCCAAAATAAATG
TCTTAACTTTGTATTAACCTTAATATAAAGTTGTACGAAACATGAGACGCCTATTTTAGA
ACGAAGGGACTACATACATGCATGGACTTTTGTTTTACAACCATATACGTTCATGAACTG
TATGTGGGTAAACCAAGACGTACGGTAGAATTTGCACATGGTTTAACACGTAATGTAAGT
TGTCCCATGGACAGAGATCTTGGGCAAGCTCCCGGGATGGACGATGCTGGCTCCACCACT
GATTCAAGGAGGACCAAAGCCCGAAAGACAAACTCGATGAAGAAGCATTGTCATCTGCCC
GAACATCGCTCCTGCGAGGACTAAAAATCCTAAACAAAACTACTAACCACACTGGAGGCA
CAGGGATTCCTTTTCGGGCACTGGCCACCGGAGCGGTGATGTCTACTATGCAACTTTATT
CTTTTAAACGTTTTTGGGCCTTCAAGTATAGAGTTTTATCGGATAATAACAAATTTTCCT
CAAGTTGATGAACTAAGATTTATAAATCCATGGGAGGTGTAGGATGAANNNNNNNNCTCT
CAAACAACCCTCCAACCAAATACAAGAAAACTTTTGTGTCCTCAACACATCCAATACAAT
GGTAAATTGTATAGGTGGACTAGTTNNNNNNAGAGATGGTGATACAAGTGTAGTATACAT
AGTAGATATGGGTTTTTGTGATCTAAAAATATAAAAACATCAAGGTAGCAAGTAGTAAAC
AGCGAGAAAAACAATATATCAATGTTTGGAAATAAGGCATATGGTTTATACTTTCACTAG
AGCATGTTGGAAATATGCCCTAGANNNNNNNNNNNNNNNNTTATTATTATATTTCTTGTT
TCAAGTTAATCATTTATTATCCATGCTATNNNNNNNNNNNNNNNNNACACAAATACATGT
GTGGATATATAAACA