morexGenes - Barley RNA-seq Database

Contig contig_46290
Source Contig contig_46290
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46290 (7296 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_46290

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62199	5	2340 bp	AK376104	Available	Available	None
CDS Structure of MLOC_62199

Contig Sequence (7296 bp)

>contig_46290 7296 assembly3_WGSMorex_rbca.fasta
GATGGCGGAGGCACCCGCCAAGGCTGACACCTTAATCTGCTCTGGAGATGAACCGGTGAA
AGATGATGACGGCGACACATGTGAGTGCGCCAGATCGGTTTGTGCCCCGGACCCGGTATG
TAGCTCGGTCGGGGCCTCCGGCTTTAGATGTTAGGTTTAGGTGAGGGGTCTGGGTATTTG
ACCCAGTTTGCATCCCTTCATCATATGGATAGAAGCACCGGCAGATGTTATCAAGATGAC
GGATTTAGACATATTGTTGTACTACTTTGTAAGGTTATTAAAAATAATCAATAAAATGAT
TGCATGCATCTTCCAAATACAAAGATTGTGGGTCATCCTCATTTTCTAAAAAAGAAACGG
AGGGAGTACATAACATAACATAGATTGTTCCCAGCTATGGATCTCAAAATATACGTAACA
TAACATAGACCATTCTTAGCTACGGCGGAGAGCCTAGAGCCCAGATCGAGGGACAAGGGT
ATATTTTGACTGGAACCCAGGCCACGGATAAAAAGGGAAAAAATAAAAGAAAGAAACACT
CTTGCTAACACGCTCACTTTTTTTACTAACGGACCGTCGGATCCGAGCTCAAGTCCTCTT
GGCTCAGATTTGGGCGGTTCAAGTTGGGAAGACTTGACTCTCAAATACTTTTTCCTAAAA
TCTTGAGATTATTAAACAAACCTTGAAATTGAAGAAAATAATTAGTCACTTAAGAAACTC
CCCATTTCATATTCTCATTACAACTCTTTGTGGTGTGATATATCACATCCTAACAATCTT
CAACTAATTCTAACATTGGTTCCTGGAAAAATATAAATAAAAGCTGAAGAAGGAGCAGCA
GCAGTAGCAGATATCCAATATGCTCCCTCCGTTCCTAAATATAAAATGTTTCAGCTTTTC
TCTATTTTCTCAGATTCTTATGCATCTAGACGTGTTTTAGTGTATACATTCGCTCATTTT
AATCCGTATGTAGTCCATATTGAAATATCTATAACATCTATAATTAGAAACGGAGGGAGT
AAATAAAATGCATGGACGGGGCATTCATCTGGAGAGTGGCCATGTCTCCAGACATCGCAA
TCCACTACCAAACTTGTAAAAGATACCATGACGAAGCGTCAGGGCGGCAACCTCTTTGCC
GTAATGCAGCCTTGCGACTGAATTCTGATTATTTGATGACCATAGCACTGCTTCATGAAG
CTCCCCTTCCTTCCAGCGGATGTCGACGGTAACATCGCCACGGGCCTTCAGCCCTTTGAC
GCTGCCTGAGGGCCACTTATCACGCGGCAGAGCGGGGAGCAAGTACAGGTCACTCTGTGT
GCTCTGGATCAACATCTCAGCAATGGCAGCTGCAAATCTGTCAGAAAGAGCAGGATCAGA
AATGCTTCTTCAGTTTCTGAAGAATCAGATGCCATGGTGAGGAGTTGGGAGGTCGACGTA
CCCGAAGTTTGCGTCGATTTGGAATGGCGGGTGTGCTGTCCACAGGTTGCTGTACAGCCC
TCCTTCAAACGCAACCTTACCACCAGGAGGAACCAGGGTGATCAGCTTTAGAACCATTCT
GTATGCATTTTCACTGTCCAGAAGACGCGCCCACAGGGCCATTTTCCATGTAGTTGACCA
TCCGGGGCCATCTTCACCTGAAGCAAAAGGGAGAGAAGAGATAAATTAGTTAAATGTGTC
AAATACTGTACTAGTCAAATGTGTCCATCTTTTGAGCTGAGCCAACCTCTTTTATAAAGG
CTATTGGCAACAGCTTCACAAATTTCAGGGTCATTATCCATGGATATAGTGTGTCCAGGG
TAAAGTCCAAAGAGATGCGACAGGTGCCTATGCTGGACTTCTGGGTCCTTGAAATCTAGC
GCCTGCATTAACACGTATGACAAATCATTCTACAACACAGAGTACGTTAAAAATGAAAAA
CAAAAGGGCAGCTTAGTATTTCGAGCACCTACCCACTCCATGACGGTACGATCTCTTGCA
ATTTGTATGGGAGGAAGTCTTGGGAGTGCTTTCTTGATTCTCTCAACCAAATCAATATCA
GCTTTACCCAAAAGCTACACGATCAACCGATTACAGTATATACATGTGCTATTACCCCAT
GGTGCTAAAAATTAGTTGCTACAAGTGATTGTCTCTTAATTACCTCCGCAGATGAAAGGA
CTGCAAGGAAAACCTCCCGGATGATCGAGACGTCCATTGTTGTCGAGTAACTCACGCTTG
CTGGCTTACCATCAGGAGCTACGAAAGCATGCTCCGGAGATGTTGAGGGATTGGTTTCCA
GATAACCTCCGGGTCCTTCAATCAACCAGTCAACCAGAAAGTTGGCACAGCCTTCCAGCA
ATGGATATGCTGTGTTTTCCAAAAAGTCCTGAAAAATATCTTACAGGAGAGTAAATATTT
CACACCTTCGAACCACCAAATAACTATTTTGTGAAAAAGTTTGAAGAATATTGGATGTTC
TAATTCTGTATGTCTGACAAGGATTGCAAATACTCAGATCAGTTTTTCTTTGAGTTTGGG
GCACCTTAACTTTCTTACAAGATGGGAGTTTGGATCCAGAAATTATCCTTGCGGAGCTTG
TGAAGTCAGATATAGTAAGACGATATCGTTGGAGAATGAACTGAAATAAGAAAGTAGTAC
AACGATTTGATGCTTACTTTGTCCAGTGAAAACTGGTAATGCTCCCACAGGTGTGTGCAA
AGCCAGGCCCCTCCCATAGGCCACACAGCATGCTTTGGATTCTTAAGAAACGCCGATGAT
TTTGCCCATATATCCGACACATGATGTGTTACCCATCCACCTGCTTGGTAATTGACCTGT
CACAGTCACATAGTTCCACACAATAAGTAGGCCAGAAGAATCAGGCTTCTGAAATTTAAC
TTCAGTGTTGCTAGAAAATGGGATGGATGGCACTGATTAGTTTGGAAGGAACTGCACTAC
CAGATTTTACTGCAGCATGGTCCAAACTCCAAAATACAGAGGAAAGATATTTGCAATATG
ACATATACATTTAGACTAACTTAACACTTTGTGTCACAATTCACTACCATTTTCCAATAG
AGGTATGGAGTTTGGTAATTATGTGACTTATCTTTCCTTTCATGACTGAGGCACAAGTTG
CAATAACTGACAATTTGTTGAACATGTTCCATTAGCTCCAAACCCGGGTAATCAGAACCA
GAACTTACTTTTGCTGTTTTAGTCCCGTTAACCGCAAGCGATCCTAGGAAATCAAATAAT
GGTTCTTGGCATTCACTAAGGTTGCAAGGAAGTGCTGGCCAGTAATTCATCTGTAGATTT
ATATTCAGATGGGGAGCTGCACTGAAAAGCAGAGCAGGTTAAGTGTTCAACATATTGAGT
TAATATCGACCAAAAAATATGGTTAGAAAACTAAGATAAAAAAAATAAAAGAATGAAGCA
AAAGATAACTAGTAAGGTACAGAAAGATCTTACTCCCACTCAGGTGCAATATCTTGGCTC
CAGATTCCTTGCAGATTAGAAACCTGAGTTCCAGGCCGAGAGCAGGAAATGAGGAGATAG
CGGCCATACTGAAATAAGAGTTCAACCAGCGAAGGATCCTCATCACTACTAAAACTCTTC
ACCCTATCTGCTGATGTCCTGATGTCTTCAGCAACTTGTTCTTGTATATCTGTTCGAGTC
ACCGAAGTGCATGCGTCGTTCGATCCTTGTGAAAGTTGCAAGGTCACGCGGTTAAAAAGG
CTCTGATAATCATCCAAATGGGCTGCTTTAAGTTGATCAAATGTGAAGTTCCTGCTGTGG
TTCAGCATACTGAGAGCTAGTGATGTGGGATCTAATTTAGAGTCTGCAGGATTAACATGT
GGCCCATAGAATGAGGATGCTGCCGCAACAACGAAAACAACCCAATCTGCACTGTCAAGC
CTCAACTTTTGGTCATTCAGCACTGTTGATTTTGCCGCGCTCCCACCCATCTGCAAACCC
AGAGCAGCTGTAAACCTAATGCCAGTTACATTATCGCCGCCGTTTTCTCTCATCCCAGGC
CTCTGACCTGGACATATGCCTTCCATGATCATCTCGTTTTCATTGATTACTGTGACGCTG
TGGTTTAACTGGCTGCTTAACGACAGTGTGCAGGAGACATGGCCTGGTGTGCTTGCTGAG
AACCTGGTGACAATGGCTTGATGCGGATTCGAGCAGAAGTGCTCTCTAGTGTACTGCACT
CCCCCAATGTTGTATGTGACCAGAGCAGTCGCCGTATGTAGATCAAGCTCTCTTTTGTAT
GAATCATACACCTGTTCCGAGGTGCTGAACTCGATATTCAATTCACCAAGAGGTTGGTAT
ACCTTCAGAAAAAGAATCAATGTATGAACAAAGCAGTATAAATCTGGGCGTGTATCATGA
GCAATATCATCAGTTTCATACGGTAGTTCAGATGCATTGCAATACTGTATTCACCAAGCA
AAGAATTGTATACATATTTAAAAAGGCATAACTGAATGCAACATACCTCAGACAGTCCAC
CGAAAAGGCCCTTGGCTGAAGCCGTGGCGTCGGCGAACCTTCCTTGGTCGACCAATCCCC
TCACCTCTGCAAGAACACCCGGCGCCTTTGGGTCGGTGTAGTTCCCTGGCACGCCGGTCC
ATAGTGTATCATCTGGCAGGAGCAAGAATGGAGCATATCACTTATGTACCCCATCTTTAG
AACATCGAATCATGGCGTAGCCGAATTGAACTTCATGACGTTAAGGCGAGTGAGTTATGC
GGTGACGCCGCACAAACCGCGCAGCACCGGGTGCATTTTGTCGAACATGTGGTGGGCGTC
CTGGCAGGGGCGCGAGCAATATGCCAAACGTAAATCTAATTCATGCGTTTCATACTCAGT
TTGATACGTATTTTTCAGAAAAGAGAAGGCACCCTTGATCTACAATTCTGAACTGACACA
ATAACAGCTTCGTTTCATGAATGAATGAAGATAAAAAGTGGTTAGTGAATTCACGGACGG
TTAAGCTGGAGCTTGTCGGAGGAGACCCCGCCCCAAACCATGGCGCCGAGGCTGCCGTTG
CCGATCGGCGCCGCGTCCGTGAAGTACTCGGCCGGCGACGAGAACGCCACCTTGAGCGGC
CGCTCCTCCTCGTCGGCCGTCCATGGCCGCCGCGCTCGCGCTCCCTCCTCCGCCGGCCGG
CGCACCCAGACCCAGCCGTCGGGGCCGTCGGTGTCCATGGGGAGTAGAGGATGAGTGCCG
GACGATTGAAGAAAGAAATGCGTTGTGATGTGCTCGATCGGAGGGAGCTTCCATTCTGTT
GTCTTGGTTGTTTGGCGCCAAGGGAGAGGACAAGGAGGAGGAACATGCCGGCGTGCATGC
AGGCCTCCGCCTCCGTGTTGGCCTTTTGCATTTGCATTCTTTTGCATTTTGCATTTGCAT
TCTAGTGTGGTGGCCCAAGCCAAACATCTGCTTCATTTTAGGGCCCGTTTGGTTCTCCAC
ATTGAACCCAACCAAACCCGCGTGGGAAGGAAGAGACCTATTTGGTTGCCTGGTTTCACT
GCTGGGCCTGCATCGCACGCATGTCAAAGCAGCCCAGAGCGTGGCTCGCTGGAAATGCTT
GGATCGACACTTTATCGCGAGCCAGGTTGAGTGCGGCGTGAGGTCGCACGAGCGGGTGCG
ACGCGAGGGCGAGGGGGGTGGCGGGAGATGGGAAATCTGGCGCGTCGTCCCGGTGCCAAA
TTAGCCGCACCCCCCTTTCTACTCACTCACCCATAGCCACTTTTTTCCCTACTGCCTCAC
CGCCGGCGGCGGCTGCGATTTTAGATCTGCACTAGAGGAGGCGGCGGCGGTGGAAAAGAC
GGCGGCGTTTGCGACGGATCTGGTGCTCCCCTTGTTGTTGGCCATGGCTCCCCCTACGTC
GTCCTCGTCTCCGATGCCGATAAGCAGCACCCCCTCCCCCCTTTCTTAGGTCGGTGGTTA
GGCCGTTAGGCAAGGTGTAGGATAATTTTTCACTGAACGAACCGTCGATGTCGACTAGGT
TATGGACGCACGGATGAGTCTGGTATTTCAGGCAGCAACACTTATAAGTGTGATTCAAGC
ATGGATCAGCAGTTCGTCGTGTTGGGAGACCTTTGATCCGCTATGGTCCAATGTTTATCC
GAGATCAGGAGAGGATCCAAAATCTGAACTACATCTATAACTGCAATGACGTTGAGGCTG
TCTGGATGCTTCGAATGAAAAGAGCACCATTTGCCAGGCTTGTCGAGACCTTCAGGATCA
GGGGGCTGCTACAAGGTAACATCAACAACTGTGTGGAAGAGCAAGTGGCAATGTTCCTCC
ATGTTCTTGGCCATAACCAGAGGATCATGGTCATTCCAACACGTTCAAGAGATCAATGGA
GACCATCTCCAGGTACTTCAAGCAGGTGCTTTTTGCTGTTGGGGAGCTTAGAGGAGAGAT
GATCAGGAGACCATTTGGCCAGACTCCACCTAAGATTCGAGGAAGCCCAAGATGGTATCC
ATACTTCAAGGTGAGCATTGACAATATACACTTTTCATGTCTTGGTATGCTTGTATTGTT
CAAGTTGAGCACTAAACACATGCTTGTGATGCCATTTTCGGGATTGCATTGGGGCAATAG
ATGGTANTCATGTCACTGCCAGAGTTCCTAGGTCACAGTCTGCAACATACAGGGGGAGGA
CTCACTACACAAGCCAGAATGTGCTTGCTGCTGTTGACTTTGATCTAAAGTTGACATATG
TGCTGGCTGGCTGGAAGGGGTCAGTGCATGATGCTAACATTCTATCAGTGATAGCATGAC
TCGACCTGATGGGATCAACATCCCCGACGACAAGTTCTACCTTGGACATGTTGGCCATGC
ATGTTGGCCGGGTGTTCTTCCACCCTTCAGGAAAACCAGGTACCATCTCAACGAGTTCAG
CGGTAGGAATTATCTTAGGATTGCACAGGAATTGTTTAATCTCAGACACTTCAGCCTTAG
AGTAACTGTTGACACGACATTTGGAGCTCTGAAGAATAGGTCTAAGATCCTGGACCAGAA
GCCATTCCACCCATACCCCACTCGGGTTAAGCTTGTTCTTGCTTGTTGCATTCTGCATAA
CTGGATCCTCCAGTGGGGCTTTGATGAACACGTGCCTGAGGAGGAAGAGGTCGAGCATGA
CCATGTTGTTAGCTCCGACCATGATGTGGAGGCATTTGACAATGATGCTTGGAAGAACAA
AAGGTTGAAGTGGGTAGAGGCAATGTGGCTTAATAGAGGTTAGTGCATGATTTGAAGAAG
AGGAAGAAGAAGCAATTGTTGGGGAACGTCGCATGG