morexGenes - Barley RNA-seq Database

Contig contig_46246

Source Contig contig_46246

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_46246 (3114 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_46246

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62150	1	894 bp	MLOC_62150.1	Available	Available	None
MLOC_62149	1	811 bp	AK358224	Not available	Available	None

CDS Structure of MLOC_62150

CDS Structure of MLOC_62149

Contig Sequence (3114 bp)

>contig_46246 3114 assembly3_WGSMorex_rbca.fasta
ACTTCTAATATAACTTGGACTCTAATATAACTTGGACTTCTAATATAACTTGGACTCTAA
TATAGCTAAGATAACTAGGGCTAAGCCCGTAACTAACCCTGCCCGTTGGGCCTCCTCCGT
TGGTACGTTGTACCGGTCATAACAGTTACACTACAATGTTACTGATAGCCAATTATAATT
CAATTTGATCAGGAGTACTTATTCAGGTTACTTGTTAATTCAACATAAAATAAAACCCCG
AGGGTTTACCCTCTTTCCTCTTTAAAGTGAAAAGAGTCAAGAAATGCAGATGCTATAACT
TGACTGGACACAAATTCTTCTGGTTTCTGTTTTCAAATGTGTGTTTTTACACTCTTTGTA
ATACTCGTATTTCATAATGTTTTGAGTTTGCTGTCACATACAAACCTCTTCTGCTCGTAT
GCTGTTAAATGCTATTGACTGTCTGGTTCATGTCTACTTCTTCCTGAATATTGACTTACA
CTAAACTTGCTTCCTTTGCCTTGCCAGGGATCAGATTGTGTGCAGCCCTTTATCGCGCTG
CAGAACTGCATCAAGGAGAATCCAGCGGCATTTTCTAAGGAGATATTGGAAGAGGAGGAG
AAGGACGAGGAGGCTGAGAAGTCTGACCTGAAAGTTAGAGCTCCAGCATGGTCTAGAGAA
TCCAAATCCAAACCAAAGCTTTGAGATCCTGTGGTATTAAGCTGACAGCCTGATACAGAG
ATTGCCCCGATTCACACTCTTCACCTTGTTTCTCCTATAAATTCTTCCGTTATAGGCAAG
ATTAAGCATCCAGGATTTTATGGCAGGCATAAGCACAGTTTGTGTGGCAGAAATATTTCC
ACACTTTTTTTTTTGGAATTACATTACACGTTATTGAAATGAGAAACTGGAAAACATGTA
TTCTAGAGACTTCAGTTTCTGAACGGATTAGACGAGAAATTGTTGTCAGCTCATTATACG
AAATCCATGGACCTTGTTAATCCATGCCTTCTTAACTGTGCAGTGACAGTTATTTGACCT
TGTTGCGGATGTTGCTATCTGTCTCTTAACTCTGAATTTACTTATGATAACAGTGCAATT
ACACGACATGTTCAATTTACCACTTTGGTGGGCATGGTCTTAATTATTCTCAAAAAAGAA
AGATATGGTTTTAATTTTTTTGCAAGAGCTTTCGGGGAAGCTCAACGATGTAACTTCGGG
ATTCTGATTTCTGAAGAACTGGACTCGGCAGAGAATTTTTATTCTTTTTCTTTTTTGGTT
TCTTTTCCTTTTTTCCTTTTTGGTCTCTTTTTCTTTTTCTTTTGAGAGCTGCCCCCCAGG
TAGGTGACACAAGCCCAAAAAGGATGTTGTCTTGGTGGGCTTTCGGCCCTTATTACTGCT
CTTCCTCTCTCCCAACCCGTCACAGTTTTATTGTTCAGCCACTGCCTACTCTGGCTTGGT
CTCTTCTCCGCACCCCGGAGGAGTCCCCACCAACTCCACCTCCGCCGCGATAAGCCCTAG
CCTCCGCCTCCGCCTCCGCCTCCGTCTCCATGGCGACCACCACCCTTTTCCACCCGCTCT
CCATCCCCGTCGCCGGCGGCCGCGTCCGGCGCTGCCCCCTCACCCTGCCCGCCCCGACCC
GCGCGACCCCCCGGCGGTCGACGCCCCTCCTCGTCGCCCGCGCCAAGCGCACCAACAACT
CCAGCGCCGCCCCGAAGCGAGAGGCGGACGAGGAGGTGGAGGTCGAGGAGGAGCTGCCGT
GGATCCAGGACAAGGCGCTGGACCTCGTGGAGTTCACCGGCACCGTCACGCAGGCCATCC
CCGGCCCCCGCGTCGGCTCCAGCCCCGTGCCGTGGCTCCTCGCCGTGCCCCTCGCCTACG
TCGGCATCTCCTTCGCCCTCTCCGTCGTCCGCACCGTCCGCAGGTTCACCTCCCCGCGCA
CTCAGAAGAAGAAGAGGGTGAGCCTTCGAGTCTGCAATTCATTCGATGCTTAGTGGGAGA
CTGTGGAGGTGATACGATTAGGAGTTTAGTTACACTTTGGTAGTCCCTCTCTAAGATTGG
ACATGTTGCTTGTGCTTCAATTCTTATTTATGTCGGTAGATAATGAAGTGATGCTATATT
TCTCTTATGAATTATGATAAGAGTTTTAGCCATGGCTAAATGTACGCACATTGTGTGAAG
CAGTGGTTCGTGTGTTCATTGCAGACTCCAATAGTCGTTCATTGGGTGCTAACATTGTTC
AAGGATCCAGAAATATGGGACATTGGCTCTTTTTTTAAGCGGGGATTTCTATGTTGCAAT
TTCATTTCTATTCATAAAATATCATAGAACCATGAGTCATGACCATACTAAATAATTCAG
TTTGTTTCAGTTAATCAGTAGGATGTTACTTTCGAGTGAGAGAAAGAATCAGGAGAACTT
TTTTTCATTTTGTACTAATGAAGTTTCTGAATCACAAGCTAAGCTTATCTTTTGGTTGAT
CACAATTCACAAGCTAAGCTCATCTTTAGGCTTTATTTTCTCTTTTTCTTGCTGATGTTC
TTGATGGAACTATAAATTCTATTGCTCTCATACGTCATAACCGTTATCCAGATATATTTT
TGGCATTTCATGGTGACTCCGTTTCTTTGCAGGTGACCAAGAATATATTCTTGTTGAAGT
CACTAGATGAGTTGTTTCAGAAGGGCAGGGAAGCAGTGGATTTTCCAGCTATCCAAGAAC
TAATGCAAAAGGTGTGCCCTTGATTCAACCATTATTCCTGAGAATCTGAACTTATATTGG
ACTGCTGTTACCACAGACCTGCTTTATTTTCTCAACAAATGAATCTACTTTGGCCAGTGT
TACTCAGATATCTTATTCTGGAAGATTAAATTACACTGATGACTTGTGGTAAAAATATTT
GGACTAAAGACTATCTACTTGCAAAGATCTAAACCAGAAATTTTGCTGGTCAGAATAGAT
TTTGACATATCAAACTGTAATGCACCAATGTGTTACAGTATATGTGGATTGCACTAGCCC
TTTCCATTAGTTCGGACTTTTGGTTGTGTTGGCTAGTGCATGAAGCTTAACATGGTATCG
GAGCTAAGGTCTTGAGTTCAAGTCCTGGTTTTTGCAATTTATTTAAAAAATTGC