morexGenes - Barley RNA-seq Database

Contig contig_46232
Source Contig contig_46232
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46232 (8679 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_46232

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62137	1	2288 bp	MLOC_62137.1	Available	Available	LOC_Os10g42110.1, FRAME:-3, EVALUE:0.0, 13110.m03951 protein protein kinase family protein, putative, expressed
CDS Structure of MLOC_62137

Contig Sequence (8679 bp)

>contig_46232 8679 assembly3_WGSMorex_rbca.fasta
TTGCAAAAATTCCTGAAACATTACCTTTGTTGCACAAAATTCTTCCGCAAAACGAAGAAA
AAAAATCCTGCAACAAGCAAATTGTTTCTGAAACTCGATAGTTGTTTCACGAATTGTTAG
GTCCAAAGTTAATTTGATTGTTTCTATAACTTGACCGCCGTTTCAGGAAAATTTTGATGC
CCGACAGAGCACCCATCTGCGGATCGTACGGTTGTGCGGGTGACGGATGTATATAACACG
ATGTATATAACACGTCCATCGATGGATGCATAGCAGCCCCCTTATTTCTTCTGACCATTT
TTTGTTCTTTTTCCAACGCAAGTGAGGACAAACTACAGATTTATTTTTTTCTCATTGGGT
ACCTTTCACTTTTTTATCCCTAGGCCAGATAAATTGAGCACTTGAGCATTGTTCATGAGT
TCAAAGAATCCGACAGTTGATTTACCAAGCAAAAAACTTCTATGCCTCCATAAGAAAAAA
AACTTCTATGCCACTTAATAGTTTCTTAGAGTTTCAGAGATAACACATATCAACACAACC
TAACCTAAGTTCTTTTCTAACTAACAAGACATAGGTTAATGCAAGTTCATACATCGAGGT
TCAGATGCCAGAGGACACGCTGACAGGACATCATCTGACGTGGCCAAAAGTCAAGCAAGA
CACTGTCTCTCCATAAAACAGGACGAGGGGCTAAAAATGATCTAACATTATTTGATGCAA
ATCACCACCAATTCATTCAACAGAAAAGCAACAGATGAGGAAACACCCTGGAATCAAACG
GAATTCAGATGGCTCTGGTTTATTTTCTCCTCAGCTAATCACAAGGAACCAACCCCCTTT
GTTCCCACACAATCGTCCAGCCATCCAGCAGAAACAAAAAAGGAGAAATCGTTAAGAGAG
CGTCACCATAATTACAATCTTCTATCCCAAGGGAGCACCGCCACGCAATGATCGGCGAAA
TCTTGCCGTCATGTGGTGCAACTCATAAGCCTTCTGCTCTTTTAGATCTTCCAGGTCACG
ACAGCATCATTAATCGACATTTGGGGGCAGGGGTCGCGAATTCGCACGATAAAACAGTGC
ACTTCAATCCCACTCCTAGCAGCTCATCAGACGTCCCAGTGAACACTCATCATTGTACCC
TTTTCTGTTGAAAGGCAACAACAGTTTGGGGGAAGCAGTGGCTTCGTCCCTAACCACGCC
AGCTGTTTTGCTTCTTGGCCTCAAAGGTGGCTCCGTCATTGAGCATGTCCTGTGCATCGG
TTTCCATTCCGAGCTTTGAGAGAGCTAGGGCTTGGAGGTAGAATGCGGTAGGCCATTCAG
GCATGCAGACCTGGGCCTGCATTGCGTCGCGTAGAGCAAGCTCCGACTGTCCGTTCATCA
GGTAGGAAAAACTCCGCCTGGCAAAAACTGTAGCTGAAGGCACTGACATCATTCCAACTA
GCTGCAACATGGCAAATTAGCTTGTCATGACTCATGTTACAGGACAAGGAAAACAATGTA
AACCACAAACCCAATGAAAGCTTTGGTAACATTGTACATCAGTTAGAAAGTAGAATTCCT
TGGTGACGGCTTACTGGCAGCACTTGAGGTAATAGGTTGAGGGCCAAACTGCTTATGGGT
AAGATATTATTTAATTGGCTATTTGGCACAAACAATCATGAAGCAGCAGCATATGGACAT
TGTAAAATAATCCTAGTTAAAAATAAGAACAGAGAATTTAAGCGATGTCACCTTTGAATA
GTAGTCAATTGCAGTCTTGAAATCTTTATCTCGAAATGCAATATCACCAAACTTCTTTGT
GTTCAGCATCTCTTGCACTTGCTGAGTCCATTCTTGAAAGGACAACTTCAGTTTTTACAG
CAGCATAAACATGCATCAAATAAAACTAGCTTATCTTAACAGAGCAAATGAATGAGATTT
CATAATTTCTAAATACTTGAGCAAATGGGAATACAGAAAGAGAGAAGCAAAAAAAAAGCA
CATGACATACTCTGAGCACAAGAAAAATAGCCAAAAAGGAACTTAATAAAAAAATGTGCA
CAATAGCATCCTAAATTTAAGCCTGATAAAATACTTGGTTATCCAGTGCAAAAATGATTG
CCTTTTCAACTATGGACAAAAAAGAATTATCAGTTATCAATGAAAGCCAGCTTCTCTCCA
TACAGAAGAGAAGATCTCTTAATCAAAGCATTTTTTTTAATTTAATCATGCAATGCCAAC
ATAGCTAAGTATATGTAACTGTAAACTAGCATAGGAAAATTGCAGGAAACCATATGCCAA
AAAACAACTCAAGTACAGGACCTTCACCAACAAGTTAGCAGTTAATTTGAGAGGGGACTA
GAAAAATGCCAAGTCGGCACAAATCACAACAAGGGAAAGTTCACGGCGTAAGACTACTCA
TAGTGGGGAGTAACTTCGACTAGTAACATCCATATAGTCTATGTTGCTACCTCGATAGTG
GGGAGTAACATACGTGTGGTGTCATGCAACACTTCATTTATTAGCTTGTAGACCATCTTG
TCTTGGTATGTGTGATGTTACTCATAGTATGAGTAACTAGTTATGTTAGTCAATTCATCT
CTCTCTTCATTAAATCATTGCCACATAGGCAAATTTGATGAGTTGGACCTCATGTTACTG
CTGAATTTACTCCCACTATGGGTAGTCTAAATGATGACCTAACAGCAGGCGCATCATCAA
TGAGAAATGGTACATGAATTGTATGTTACCTCATTTTCTGCACCTTCATCATCTTTGTAA
CCTGTTTTCAGCAATATATCATGTACTGCTGTAAGGTCCATTCCGGCACAGGCCTTTCCA
AGTGGAGAAAGAATAGTTGGTAAGACCGACGCAGTTTTTGTAATGCCCATCAACACATGT
GACGCCACCTAAATTATGATGGATAAAATAAGTGAATTGTGTTACTGTGGGCAACTCAGA
ACAACAGTAACAATCCAAAAGATAGTTGAAGCTGCTTACCTCCTTTTGCTTCTGAAGAGG
CCCAACAGAAGACAATAAATACTTTATATTGGGTCTGTCCCTTGCTTCAAACTGCAAGCA
TTTTGATGCAAGGTCAACTAATTTTGAAGCATCTTCATTAGCATATTGTCCTTCTAAGGA
GGAATCCATCAATAGCAGTATGTTCTTTCCCCTTATCAAATCAAGTGCCTGTATTCGAAA
CAAATGACGTGAGAAATTCACTGGCATGGCAACAGTGATAGATGGGAAGACAAAACCCTA
GCATAATGCTGTTACGTTATTTGAGCTGTGCTTGGCTTGTAGTGTAAGGGTATGTTTGGA
TGGTGACCAAAACCAACCATACCATTTTTTGGTTATAGCCAAAATTTTGGCTCTTGTTTG
GATGGTTATCAATACTTTGGATGGTTATCAAAATTTTAACCCTCTAACCAACTATTTTTC
GCTTTTCTTGTCAACACTGGCAAAAACATGGACAACCAAAACCTCAAATTTTGGTAGGAT
TGGCTTGGGCTTGCTTATCATACATCAAGAAATCTAGTGCTTAGCACATTAAAGCTAAAG
GTTCAACCGTTCGAAACTCATTTCGGCTTCCAGCATGATAATTAAATAACAGTGTGGTAC
TATCCACGATGCAAGGAACTGATAACAAGAAAGGCAAAGATTGAAATGAGGCATACATGA
CTGGGAGGAATGTGTTTCCCACTCAAAAGATCCAACAGAACTGTTCCGTAGCTATATATC
ACACTCTCAGCGATGACTCTGCCTGCCATTGAAGAGTCAAGCACAAATTATTCAGTGCAG
TCCAAAGAGCACGTGATGAGCAGTTCAGGAGTAAAAAGAGAAATTGCAATCGGTTTATCA
CCACGACCCACAAGGTACCTATTATTTGATACTGAGCGAACACAAAACTCAAGAGTGTTT
TTAGAAGATAAATTCATTACAGGTTCACGAATTACTTCTGTGGACATAAAAAGAGCACTA
ATCTTACATCTAATGACTTAAAACAAGTCCACATGTTCACTTGTAATGGATAACACCGAT
GGTATTAGCAAATCGCCAAATCATGAATGTGGAGGGATCCTGTGGTCATGCGTACCCGTT
CGTAGAAACTCTGGAGGGGTGTAAGCCAGGTTGGTGCTATAACTTTTGCCGTCACGGCTG
TTCTTCATTAGTCCGAAACTTGACAAGCGAGGATCACCTTCCTGATGGCAACATATATTG
TTCATGACAAGTGAGAATTTCCTCAGTAGCTACAGAGGTCAATCAAATTTCATAAACAAG
ACTTATTGAGAAAATTTTCATGTTCATGGAAGGAGTAACAGCAGTTATGAAAAGTCAGCT
GTAAAGAAGTAGCCAAAGTAAGGTTTCCATCAGTAAGGTGATCCTTGCTTGTCAAGTATC
TACTGAACCAGACAGGCAAAGCCGTGCATACCTCATCAAAAAGTACTCTGTAGGCATTCA
AGTCATGATAGATTTTCCTGTTCTCTGCATTGCAATGATCGAGAGCTTGCGCAATGTAAT
GTGCAACCCTCAATCGCATTTCCCATGGCAACGGCTGCTTATCCCCTGCAGAGAGGCAGA
CCACACTGCACAGTCAAACAAGAAAGCAAATATAGCACCACATGGTATGTGTGGTAAGCA
ACTTCATATTTGAAATTAATTCATGACTATGATGATTTAGGTAAAATCCAAAAAAATAAA
GCAAATATAGCAAGAGAGAAAATGCAGACACGCCCACATAGTCCTGGCAAATTGGCCACA
TCTGTTTATGCACGAGACAGCAAGAGCCAAATGTGGTGATGGCAGAGGTGCATTAAGCTC
CTCAATCAATGCACAGGAGAATCATGTTTTGATCCAACCTCCACGGATCAAGTAGTAGTA
ACTACGTCAGAGCCCGTGGCAACAACTACAGCTAACTGGATACGGATATGAATAGACAGC
GGCACGTACAGTGGAAGAGGTGCTTGGACAATGTGTCGTTGGGCATGTACTCCGCGACGA
GCAGCCTCTCGTCACCCTCGGCGCAGCAGCCAATGAGGTTGACCAGTCGCTTGTGCCGCA
CCTTCCCCACGCCGGCCGCTTCCGCCTGCAGCAATCAAACACGTGAGATCCGGAACGGGA
TCCTCGAGCGGAGGCGCATAAACAGACAACGCATTTGCATTAGGGGTGCAGGGGGCGTAC
GAGGAACTGCTGCGGGTCGGGCCAGGAGAGGCGGGAGAAGCGCTTGACGGCGATGAGGCG
ACCGCCGTCGAGGCGGCCCCGGTAGACGACGTTGGGCGCCTTCTCGCCGCTCTCGGAGAC
GATGAGGTCGGCGCTGAAGCCCTTGGTGGCGGCCCGCAGCTCGGCGAGCCCGAACTCCCT
GAACACCGGCACCGCCCGCTTCGCCCCGTCCTTCTCGTCGCCGTCCGCGCCCGCCCCGTC
CGCTCCGTTCGCCGCCTCTTCCGTGGAGCAGGAGAGCAAGCCAGGTTAGATTCGTTCCGG
ACACGCGCATTCGCTGGGGGGTTAGGGTTTAGGAGGAGGCGGCGGCAATGGCGGCGGGCC
CGCCTGCCAGCTTGCTTGCTTACCGGGATCTGCGGGGTCGTCGGGCGGGAGGGCGGCGTC
GGCGTCGGGCGGCAGCGGCTTCCCCGCCGGCTTGGACTGGAAGCACCCCATCGGAGATCT
GCTAGCCTGCCAGCGAAGGAACGCGAGCCGTGGAACGGAGGTGGGGGAGGGAGAGCGTGT
GTGAATGTGGACTGGTGGAAGGAGGAAGCAGGAGAGGCGAGTGTGGCAGAGTGAGGTCAC
TGAGGTGGGAGGCAGCGCTCCGAGAGAAGCGCGGCGGCAGCAGGCACGGGCAAGGATCCG
CTGGGTGCGCACCAAACACCGCGCAGCAGCCGTACGCGGCTACTGTATACGAATATGTTT
TTTTGTATAGATGGAAAAAAGAAAACAAGAAACATCATTCGATTCAGTAGAGTATTTTGC
TACGACGGAAAGGTTTCTGCTCTTCTGTCTATTGTGTATTCAGAAGATCAGAATCAAATC
GATGGTTTATGATTGAACAAGGGACCGACCGACCAAGCAATGCTGTGTGCACAGAAGATT
AATAGGGCCAGTAGCATCTGTCTCTGATTCTTTATTTCGAGAACACCGTCTGCCTCTTAC
TCCACAAAAAATACTTCCTTCATTTATAAATATATTTCTTTTAAATTACACCACGAACTA
CATACCGTACAAAATATATACATCTGTATATAGTTTATAGTAAAATTTCTAAAAAATCTT
ATATTTAATAAAATTTCTAAAACATATTAAAATATAAATTCATTCATTTTAATTTATAGT
AAAATATCCAAAAGGTTTTATATTTAAAAATAAAGGAAAGTATTTAGGAATGGAAATAGT
AGTACTTATAAAATTTTTGTAATAGTACTTACATAGTAGTTTAACATTCTCGCTAGATTT
GCATTATTAAGCTAAACTTGACTAGAGTGCATAGGCATAATTATTTTGTACAATCATCCA
CGCATAAATCCAAAAAATGGTCGGATGTATCACAGTTTGCACTAAACATGTTTATTGGCA
GCCTGGCCCGAGCCCTGCTCAAAAAACCAAGTCAGAGCTACTTCATGTCACAAGCCCAAC
AACAACTACTCATTTCCACCTCGTATATGTGGCACGAAGCAATTTCGTCCTGATATTTTT
TATGGCAACTTTACTTACCCGGGGATGGCAACTTTAGTTGCAAAGCAGGGCAACTTTTCT
GTTTTGGTTAACTATAGTTGACATGTCTAATTAACGGTAGTCGCCACATGTTGTGAACCC
ATAGTTGTCATGTATGGTTAACCATAGTTGCCATATGTGATTCACTAATTGCCACGTGTG
GTTCAACCATAGTGGGCATGTATGGTTAATCATAGTTGTCATGTGTGATTAACTAGTTGT
CACATATACACAACTATAGTTGTCATCTATCACCGTACGAACGTCGTGTGGGTGAAGAGC
GGTTCACCCACACCGCGTGTACTAGATGATGTCCATGTGGGCAAGGACTGGTTCACCCAC
ACGACGCAGCTTGCAACTCCTTGCTATGGATCGTGTGGACGAGTGCTCTAACCCCACATA
GCACACTACGCCTAGTACAACTCTAGTGTAAAAATATTTAACTAGGTTATATAGTTAGTT
TAACTCTAGTGTAAATTATATGAGCTAGGTTATAGAGTTAGTACAACTTTAGTGTAAAAT
TATTTGAACTATGTCATCGAACTAGTACAACTCTAGTGTAAAATTATTTGAACTACTTTA
TAGAGCTTGTACAACTCCATTGTAAAAATATTTAAACTGGGTTATGGAGCTAGTTCAAAT
CTAGTGTAAAATTATTTGAACTAGATCAAAGACCTAGTACAATTCTAGTGTAAAAATATT
TAAACTAGGTTATAGAGCTAGTTAAACTCTAGTGAAAATTATATGAGTTAGGTTATAGAG
CTAGTACAAATTTAGTGTGAAATTATTTAAACTAGATTATAAAGCTAGTACAACTCTAGT
GACAAATATTTGAACTAGTTTATAGAGCTACTATAACTCTAGTGTAACAATATTTAACTT
AGGTTATAGAGCTTGTACAACTCCACCCTAAAAATATTTAAACTAGGTTATGGAGCTAGT
TCAAATCTAGTGTAAAATTATTTGAACTAGATCAAAGACCAAGTACAATTCTAGTGTAAA
AATATTTGAACTAGGTTATAGAGCTAGTTAAACTCTGGTGAAAAATTATATGAGTTCGGT
TATAGAGCTAGTACAAATTTAGTGTGAAATTATTTGAACTAGATTATAGAGCTAGTACAA
CTCTAGTGAAAAATATTTGAACTGGTTTATAGAGCTACTATAACTCTAGTGTAACAATAT
TTAAATTAGGTTATAGAGCTAGTTCAACTCTAACGTAAAATTATTTGAACTAGGTTTAAG
ACGTATTACAGCTTTAGTGTAAAAATATTTGAACTAGGTCCAAGACCTAGTACAACTCTA
GTGTAAAAATATTTGAACTAGGTTATAGATCTAGTTCAGCGCTAGTGTAAAATTATATGA
ACTAGGTTGTAGAGCTAGTTGATACGTCTTCAAGGTATCTATAATTTTTTATTGTTNNNN
NNNNNNNNNNNNTCATTTTAGAACACTTTTTAGGCACTCATCTACCAATTTACATTATTT
TTTAGCACTAACCTACTCATCGAGTGCCAATTGTCACTTGCTATTTTCTTCATGTTTTTT
TAATTTTTTTAGGTTCCAGTACCAAACGAAGCACAATGGACCTGAAACTTTGTATGAATA
TTTTATGGACCAAAAGAACACGGTGGAGCATCGGAAGAAGGCCGGCAAGCACATGAGGCT
ATCGCAAGTTATCTGGCCACGGCCGGGGGCGGGGGCGACCTAATAGCTTGTGGTCGCGTT
GTGGCTCCCCCGACCCTGTTCTCTGACCTATAAATTCTTATTTACCCTAAAAACATGAGA
GGAGGCCCCGAAACAATTTTTACGCCGCCACAAGTCTCTACTCCGACGGGAGGCCATCTA
GAGCTCCGTTTTGGCACTTTGTTGGAGGGGGGGTCGATCACTGAGGGCTTCTTCATCAAC
CTTGCTNNNNNNNNNNNNNNNNGTGAGTATTTCACCACACACCTATGAGTCCATGGCAGT
ACCTAGACGACATATCTCTCTCTTTTTGATCTTCAATAC