morexGenes - Barley RNA-seq Database

Contig contig_46171
Source Contig contig_46171
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46171 (7452 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_46171

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_62070	1	190 bp	AK252850.1	Not available	Available	None
MLOC_62071	1	1286 bp	MLOC_62071.1	Available	Available	None
CDS Structure of MLOC_62070

CDS Structure of MLOC_62071

Contig Sequence (7452 bp)

>contig_46171 7452 assembly3_WGSMorex_rbca.fasta
ATAGGCGCCTGAAATAATCTTTCTTCTCCTTAATTGCCTTCTGGACATGATCGTTCCACC
ACCAGGTATCTTTAGCTTCTATTCTACTTCCTCTAGACACTCCAAACTCCTCTGAGGCCA
ACTTACGGATGCAAGTCGCCATCTTCATCCACATGTTATCTGCATCACCTACTTCCTCTG
AAGGCCCCATCTTAATGACGCTCTCCTTGAACGCTCGAGCTACCTCCCCCTTGAGCTTCC
ACCACTTCGTTCTAGCGACTTCGGCATGCTTATCCTGCTGGACACGAATCCGAAAGCAGA
AGTCAGCAAGCGGAAGCTTTGCTGAGGGATAATACTCTCTCCAGGTATCACCTTACAGTC
TACGCAAGCACGCCTGTCTTCTCTTCTCAAGAGGATGAAATCAATCTGGCTAGAGTGTTG
ACCACTACTATAAGTCACTAGATGTGATTCTCTCTTNNTAAAGAGGGTGTTAGCTACGAT
CATGTCGTACTCTAGCGCAAAGCTTAAGACATCTTCTCCTTCTTGATTCCTGATGCCATA
GCCAAATCCCCCNNNNNCCCCTTCAAAACCTGTGTTAGATGCGCCCACGTGGCCATTGAG
GTCTCCTCCTATGAAGAGTCTCTCGCTAATCGGTACACTTCTAACCATGTCCTCCAGGCC
TTTATCTAGGGCTGGACATGAGCCGAGCCGAGCCGAGTTCAGCCCGAGCTTGAGCTCGGC
TCGTCTTGTTGGTTGAACGAGCCTGTTTATGAAGGCTTAGCTCGTTTGCCCTCTGACTTG
GTCCAGCCCGAGCAGCTCGCGTGTTCACTGCTAATGTGTGTGCTTGCATGCGTCGGGGCC
GCGGACGTTTGGCTAGGTATCATGGGAGGGACGAGCGGCGGCGGATGCTTGGCTAGGCAT
CATGGGAGGGACGAACGATGACGTCCGAAGTGGCGATGAAAGGGGGCATCTGCCGTCAGT
GCCGAGAGCGGCGAGGACGACGACATCTGACACAGCAAGGAGGACGGCTGCTATACTCTA
GACAATCAGGCAGAAGCATGCATCCATCCATCCATCGGGAGCATGCGCAACCGTGCAGGG
GAGCATTATGTGTCGTATGCCGTCCATGCGCCGGTGCAGGGGACCACGCGTGAGTGCCGA
TCGAGCGTGTGTGCGTCGAGCTACTGCTAGGGATGGAACGGAAGGAGAAAGTACATGCTC
GTCACAGTTTGGCGAGAAGCGATGGGAGGTGCGTCCGCCTGCGTTCGGTGTGGTGAGGAA
AGACCGTGTCGCCATTCGCCGTCGGTCCAATTTTGCGGCATGACGAGGAGAGGGATGAGA
TGGTGCCGAACAGAGTAAGGGATAGACTGCGTTCTCTCTGTGTTGCTCGTGCCCTAATGC
GACGATGGCTGATGGGAGTTCGGCTAGGCCTCGAGCGAGTCACCGACTTGGACCGGGCGA
AACTCGTCTCGGCTCGGTCGGGAATCGGGCCTCTTTTCACAACTTTGCTCGCTTGTTTAT
CCTATCGGGCCGAGCTGGAGCGAGCTTCGAGCCGAGCCAAAAAGCTCGCTCGGACGTCCA
GTCCTACCTTTATCGCTGCAATGCGCGTGTACTGCATTTAGACAACAAGTATCGATCATC
AGTTCCAACACTGAAGGTTTATTTAATTTTATCATCATTTTTTTAAGAATAGATAAATGC
AACAAATGTCTATATAAGATTATCCTCCACTGAATTACCTTTCATTTTGCCTTCCAATTC
AAGTGCTTACGATAACACATGTTTTTTTTTCAACCTTACGACAGTGCAATTTTTTCCGAA
AAGGGTTTAAAATGATTTCTTTTGGGAGCAATGCATACATACAGTTTGGGGAAATAGGCA
AACGCGGAACAACAACTCCTTGACGAATCAGTAATCAAGTGTAACGAAATGCTGAGGTGA
GAAAGATGGTTCAACATGTGTCTAACTGAAAGCAATAACTAAGCTAAGACAACCTTTCTA
ACATTTCGAAAAGTGACACATAGCTCATGAGCACACAACAGATTTTTGCTCGTTCAAAGG
AAGGGCTTTTTCTGACTTACTCTCTTATAATGTGATAGATCACGTACTAAGCGTTCCGAA
AAGAGAAGTTATTTTGCCATCGAAAGAAAACACGCGAGTAGTCGAAAGCTGAGGTGGCGG
CGAGCACTCACCTCGACCTTGTCAAGCTTGCCCTCATTCAGAACCTTGAAAAGGGTGAAT
CTAGCGGGCGTCTCGAACAACATCAACATCTCCAACCAAGCTGCAGCTCATCTCACCTGG
ATCGAAGCACAACCACACAACGAAATCAAAACAAAGGCAAAAAATTGCAAAGACATGAGA
AATGATCAGCATGGCAATATTGTTCAGCAGTCAAACAGTCCCAAAATGGTACATTGAGAA
ATCTATATCGACCTTCCAGTTTATAGAAGAACAAGAAACTACAACATGTAGAAGATAACA
CATGAATATTCAAACCTTCAGTTGAACAGAGAACCAATAATACGATCCATCAGAAACCAA
ATGCTTTAACATCAACATTTTCCCGCACCAGATCAATGGAACTGAATCAGCAAAGCAAAG
TAGTGCTTAAAAGCATAAACAAAACATGTCCCCACAAGCCACAACAAGACAATTTCAACA
TATTTGAATGATTAGTAGATTTACCATTGATAACCAAATCACCAGCATAGATCATAGCCA
AGATTACATGCCTATGTATTATACCACACCTCCCGCACCAGATTAGAACCCTACAACATG
AAACCCCAAACGTATGAGCAGATTGGGCCAAGAGAAAAAAAGAACACACACTAAAACGAA
AGGGGGTCGGGAGACAGGACGGAGACCTGGAGGCGGACGCCCCTGTGCAGCGCTGCCGCT
GGCCGTGGCGGCTTCCCACGCCACCTGCTCCTGCAATCCTCGTGCATGATGGAAAGAGAG
ATGGACCAGGGCTGGGCTGCTCCTTCCCCTTGTCCCTGGCTGCTGCGCTGCTAGGCACAA
AGGGAGAGAGGAGCAGCAGCAACAAGGACACAACAAGGAGGCAAAGACGGGTGGCAGACC
TCCTTCACCTTCCTCGCAGCTGCACCCCACCGTGATTGGAGTTGCCCTTCTCCGGCATGG
GTCCGTCGTCTCTGTGCACCTACGGTGGTGGAAGGGGAGTAGGAGGCCATGACGAGACTC
TTAGGGCGGAGGCCATGGCGAGGAGCGAGGAGGGAGGGGATGTGGGGATCAAGGGGAAAG
GGGATAGGGTTGTGTGGCGGCTGGTGTGGAGAGGGACGACCGGAGGAGACTATGGGATTG
GGTGCGTGCGGAGCGGATTGGGCATACTGTTTTGCATGCGACAACGGGCAACCCAGCCAA
TGAATGCGTGGCGCGAGCCCACCCGTCATTGTCCGCAAAAATAACCTTGAGGTGAAAATT
GGATTTTACTGTTGTGAAGATCCAACGGTGAAGACATGCCCGAAGGCAGATCGGACAGTC
GACGAAGCCCCAACCGGGAGCTTTGTGGGAGCAAGTTCCCCAGCCACCTTATAGGTTTAA
ATGATGGTTTGATTGATAGAATGTCACAACATTTGCACTGGGTGCTGTATTGCCATTATC
ATTATAGAATCTTGGTAAATAAATGTTGGATATCCAGAAAGCACCGATGTCATGTTCATG
CATTCCAAATTGTAAAATCCGCCATGCCGTCTTCATTTTATTTTATGATCAACATTTTTA
CCATGATATCTTTTTTTTCTCGTTTGCTAAGCAATGTTCATTTGCTTACTAGGTAGGATA
ATTATTTCAGGATTGCAACACATACTCAAAACTGAAGGTCTTCCTGGGTTGTATCGTGGC
CTTTCTCCAACAATAGTAGCACTATATCCAACTTGGGCTGTAAGTATTCATTAATCTTGC
ATCTAATGTTACACAAATGTTTGGCTTCATTATAATATGTTTGTATCTAGGTAATCCTTT
TGTGTTTTGTTGCCTGATTATGATTCCAAACAACAAAAGAGTTATAAAACCACCTAGTGC
GATTTTGATGTCATCGATCTACTCCGAGGATGACCTAGTGTCCAACTTCCAGGGGACACG
GCCGATCCAGTACCAAGCACGATCTGCAATGCATTCAACCAGGATTACAAGCTACTCTGG
GATTTAATCCAATGTTGCCTGGAGCCGCAACGCCATCTCGTAGATTCATGATTATTCAAC
CATTCAAGCCTTTAGTTGAGGGTTATTTTCCACTGCTTGCGCTGCTAACCTAGCAAAGGC
TCAACCACACTCTCTGAAAGCCGTCATGTGGGCATGGAAAGCCATGACGCTGAAGATGCC
ATGAAACTTCTCAACAAGCACTTGAGCTCATCCATGCTGAGGTCGCACCACAATGATCAC
GTGGCCGGCAGAAATAAGTCCTTGGGAGCAACAGCTCCGAGACAACCTCAATCGTAGCTG
CTTTTAACAACAAGCTCAACTCCTCCATACAAGGGGAAGGACAAGCCTACGTCCACTGCT
CCCGGTTTCCAGCCCCCACCAAGGGACAAGGGCGATTTTGTCAAGTAGTGCCACTGCAAA
CCGACAAGCCACAACCTCAAAACTGTCGCAAATATATCAAGGCAATTCAAAGACAAAGTG
GAGGTGACATCCGAAGGTGGTCACCGTGACTGTAGAAGTCAATGAGGACTCAATGATAGT
GTCGTGCCGATTGATTATCAGATTGCACCCTGGACCTGATGTTCAGGGGCTCAGCGCCTT
ACGAGTCCAAGAGGCAGTACAAGGTCAGTCCAAGAGGGAGTACAAGGTCTCTAAAAGGCA
ATTGCTGGTCATCATTTACACCCCGAAGAAGGCCTTATGCCACCATGACCTTCAACCAAG
AGGACTGTCTTGAAACCTAAGCCAACCTGGGTGTTCTCTCCATTGGTGGTAACCCCGACA
ATCGACAACTGTTGTGTACTTATCGATGGGGGAAGTTCGCTCAACATCTTCACCGACGCC
CTAGACAACTTGAAGTCCCTAAGTGCCTAGGTCTTTGGTCAAACCTATAAGATAGATCAC
CATGTTCGTTTCTTCCGACACCTTGGACAACTACAAACATAGAAGGTACACTTTGACGTT
GTCGACTTCAAAACAACATTCAGTGTCATACTAGGGTGACAGACTCGCCAAGTTCATGTC
TACCCCCATTATGCTTCTTCTTGCCTTTAAATGCTCGACCCAATAGTCATTTAGGACTAG
GACTGCATGAAGGCCGCCCTCCGTTGCAACAAGAGCTTATACATGGCGACCAGGGATGTC
CACACACTCGGAGAACAAGTGATGCGCAAGTTGGCTTAGCCGAACCCGGGAGATCACCCC
GATGTCCAAGCCTAGCATTGAGTTGACTTTGAGGAAGATTTGAATGCCTCGAGCCAGAGG
GAATAAAAGCAAGAACACCCTTGGCATGCTTATGGCATCCTTCGATAGCGATCCCTTTAC
TAGTTTGGTGATGTAAGGCCTTATGCCCTCACCAGTAAATAGAAGTTCTCGCTTGCTAGG
GGTGGAAATGATGGCCAACAGTTATGTTTTAGCAACCTTGTACTGCCTCTTTGACTCGTA
GGGTGCTGAGCCCAAGACATGCCATCCAGGGTACGATCTGATAATCGGTCGACAAAGCTC
CATTGGAATGCATCCCTCGACCTAGTACTTGCAACATCATTCATGTTAGCATAAGGATAT
CTTTCCTTCAGAGGAGAAACCATGATAAGGTGTTGAGCATAGCTACGTATGTCTGAACTG
AGATATTGCAGGCATCCACAGGGAAAAGGAGAGTTTTGTGTCGCAGATCACTTGTCGCCA
CACACAATTGATCCGTGTTGCGCCACGAATTCCTCACTTCCGTGGAGGAGAGCCGACCAT
TTGTTTGAAGCAAAACGACAAAGTTGATTCAAACCCTAGGGCTATTAGGGCTTGGCGAAA
GCTACAAACTAGGTGTTGGAAGACAAAATGTAGGAGAAAAATAACGTACCGTTGTATAAG
GTGTCGATTGATTTAATTTTCTAATCAGCCAGAACCTTAACATTTATAAGGTACACATGG
CTTGCATTTAGGATTATGACTCCCATACCTAAAGGGCCACCTTAATTTGGTTACCATGTA
CAAAGTATAATACTTCTAATGCTAAATCTACCTGCTAGCTTGCAATACGTGACATCCAAA
CATTGTTCATGTATGGTTATTCATTGGTTCACAATGCAACCAATAAAAAATCCGTGCATG
ATGCTAGTCATACTAGAGAATGGATTTTGAACTTACACCAATTCCAAATGTTTGTCAAGC
AACCAGCTTAATGACCCATAATTAAACTAATTTGCTGATCGAATAAACCAAATAGCCAAA
TTATACTTGCGATAACACTTTGGCCGAGAATGTTCATGATTAACCCTTGGCCTCTATCTC
CTCAGGTTAGGCTATCTTCTAATAGGAATGAGAGAGAGGCAGAATCGAGCCATGGATGAC
GAGGATGGCCGCGCGGAAATTTGAAGGACAACCTAACCATTAAGGTTAGACATGGCACTT
AGATTGACTACCCAAGATATTTGCACCTCGTGGCAAACCCACACCTCTTTCCGTCTTGGG
CCAACTTGAGCACCCTGATCTCTTGGGCGAGGCCACAATATGCCCCTTGCAAAACGCTAC
TGGTGCTCCGGCCTTGGCATTGCATGGGATTAGGGTGGAGGAGCAGAGACGCCATGTGGT
AACCTATCTCAAATTCTTAGTGACTGCCTTTGCTTAGTAAAGCAGTCTTCCCAGGGTAGC
CAAGAGTTGCCATGGTAAGACCTATTGCACATGGTTGGCCGTGGAGGTGAAAGATAGTAT
GCGGGGTAATAAGAACCTTGGGACGACCTTAAAGATGACTAGCAAACCATAACCTGCTCG
TCCATTCCAAAATAAGCAGGTTAGACCACCTGACTCAAGACACTCCCCCTTGGGCTAAGT
GGCTCGGGGACTAGGAACAAGCTAAAAATTAACTCAAGATTTAATGCTACGGAGAACAAC
AATCCACGCAAGAGGAAGTTGGTATGATTTTTCTTTAGTTGCATATTTTTTTGGCTTGTA
CATCTGTTATTATAAAGAAAGACCCTAATAGCCTGAACCACTAGGGGTTTGGAACATCCT
CGCCGACTTTTAGGGATCGAGTCTCCACACAAGGAAGTGGCCATGCTTTGAAATACACAC
GTGTTGTCAATGATCTGCTCGGAGCGGTGGTGGTCTAACGTGGACATATTGACCGTATGG
AAGTTGTCGAGGACGCGGGCTAAGATTTCAGTGATTGCTCTCTCGCTCGTCGATCTCACT
TCCCCAAATGCATCGAGGCCACAAAGGAGTCTTCAACATGTTGAAGTAGGTTATCAAGAT
CCCTCAGTGGGCTTCATCCACAGGTCCACATGAGACAAGAAGCGATCGATTAAACCCTGC
AGGGGTGCTCCA