| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_46113
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_62018 |
2 |
2164 bp |
MLOC_62018.1 |
Available |
Available |
LOC_Os01g70300.1, FRAME:+2, EVALUE:0.0, 13101.m07635 protein aspartokinase 3, chloroplast precursor, putative, expressed |
| MLOC_62097 |
2 |
2789 bp |
MLOC_62097.2 |
Available |
Available |
LOC_Os05g51110.1, FRAME:-3, EVALUE:9e-143, 13105.m05498 protein expressed protein |
| MLOC_62062 |
4 |
3697 bp |
MLOC_62062.2 |
Available |
Available |
LOC_Os11g14380.1, FRAME:-3, EVALUE:0.0, 13111.m01474 protein resistance protein LR10, putative, expressed |
| MLOC_62095 |
2 |
1734 bp |
MLOC_62095.2 |
Available |
Available |
LOC_Os11g39990.1, FRAME:+1, EVALUE:6e-129, 13111.m03952 protein patatin, putative, expressed |
| MLOC_62019 |
1 |
173 bp |
None |
Available |
Available |
None |
CDS Structure of MLOC_62018
CDS Structure of MLOC_62097
CDS Structure of MLOC_62062
CDS Structure of MLOC_62095
CDS Structure of MLOC_62019
Contig Sequence (7508 bp)
>contig_46113 7508 assembly3_WGSMorex_rbca.fasta
CTAGGGCATATTTCCAACACATAGTAATGCATGGGGGAAGATGACATGATGCAGACAAAG
GTAAACTAAACCAATATGAATAAACCCCATTGTTTTATCCTTAATGGCAGCGATACAAAT
ACGATGGCAGCGATACAAATACGTGTCATGACGTGTCATGTCCCTTTCTGTCACTAGGAT
TGAGCACCACAAGATTGAACCCATCACAACACACCATTCCCACTAAAGATAAATCAATCT
AGTTGGCTAAACCAAACTGATAGATCAGAGATAAATACAAAGCTATAATAATCATGCATA
AAAGAATTCAAAGAAGACTCGGTTAATATTCATGAATAATCTGATCNNNNNNNNNNNNNN
NNNNNGATCCCAACAAACACACCGTAAAGAAGATCACATCGAATAGACCACTGCAGGAAT
CGCGATGAACTTTGTATTGAAGATCATAGAGGGAGAAGAAGCCATATAGGTACTAACTAT
GGACCTGTAGGTCTATGGTGGACTACTCACACATCATCATGAAGGCATCAATGTTGATGT
AGATGGCCTCCATGATCGATTCCCCTCTGGTAGGGCACCGTAAAAGGCCTCTAGGTGGCC
TTCCGTTGGAACAAAGATTTGCAGCGGCGGAAAGTGTTTTAGGTGGCTCTCTAATGTTTT
CCCAATATTTGAGAATTTATATGGGTGAAATTAGGTCAGACGAAGCCATGTGGGGCCCTC
AAGGTAACAGGGCATGCCTACCCCCCCTGGGCGGTCCTTGTTGCCTTGTTGTCTCCTCGT
ACAACTTCTGGCCTCCTTCTGAAGCTTCCAGTTCCTCTTTTGTCCGTAAAAAATATTGTT
AAAAAATTTCATAGCATTTGGACCCCGTAGGCCATCATGAGAGGAAGTCCTTGTTGCCAC
CATCGGTCGTGTAGGATTTGCGCGACAACGACGCCGGGAGGGAAGGAGAAAGGCCCAATG
GGGCTAGGGTTGGTGGCGGCGCCCAGGGCCAAGGTGACGCGAGGCTAACCGTCGTGCCTT
TCTCTCACTTTCTGTGTGTATCGAGGTGTGGTTCCTCAAAAATGACCCTTCGCTAACAAA
TGAGTATACCTTATTAGCAGAATGGCTTACATGAATGAATGAAAAATGAAACAAAGTTGC
TCACCGAATATTTGATATCAGCAACAATAGGACTTGTGAATGAAGGATCCCTGTTCGGAG
CATTCACCTTCTTGATCAACGTGGGGATATTAGAGTGCAAGATGACATTGTGAGAACTTT
CATCCAGTATGACTGCATGGGAATGACAAAACAAGAAAGAGCTAGAGCTTCTGCAAACTC
CGGAGTAGCGATGACCCTGAAGGACAGACAACAACCCACCACACACCTGCCCATATGGTC
CCGCCCCACCACACTTTTTTTGAAACGGAGCTAAAAGCTTTGCCTCGCAGCCTCGCAGCC
TCGCAGCCTTCTCCGGGATCGTCGGCGCGCGCCCGCCGGAGGCGTCCCTCGAGTGGCCTA
GGCTGGCACTCTGCCGAGCCGCAACGGGCGGCGATGTTAGCGAGCGACCGACACCGCCAT
CCTTGGGTGCGCCCATGGGAATGCTGGAGCAGACCGTGGACCACCCAAGAGCCGACGGTG
TCGGAGTGTCTGACCGCATCTCATCTCGGAGCCCAACGACCGGGGGCGGCAGGGTCCCAC
GGGACCGGGGTGTAGCAGAGAACCCGTGGCGAGCACGGCGAGGATGGGAGTGTCCATCTA
GCCCGACACTGAGCGCATCCTCCTCCATGGCGAGATCCCGGGTCGTAGATCATCCCCCTC
ACTAGGCAGCGAGGGGACGACGGAGTCCAGTATAGCCGACGAAGATGCGAGCACTGGCCC
GATCGCGAGGGAGGTCGCGGGCGTCGGGGCGTGACCAGGATCCCGGGCGACGAGCCCTGG
CGGGCGGTGGGTGAGGGGACGTGACATGTGGGTTTCCCCATAACGAGAAGACTCCTCCAA
TGAGTCATACCCCTCCCTGTTGTCCCCACGACAAGGCAACGGAGGGTCAGAGGGCCTAGA
CGCGTCTCCCTCAAACACCACGTAAGGATCCTCGGTATCTAGCTCATAGGACAGTCGTAT
CCCCGTCCCGTCGAAGAAGAAGGGAAAGATCAGTCCATTGATTCGATGAGGGGCACTGAA
GAGGACGTAAAGAAAACAAGAACTTAGTAAAATGAAAGGAGACTCCTTTAACCGTTGATG
AATCGTCGGACGAAAGAGAGGAGGAGCCGACGCGGCTGTTGGTAACGGCTATGGTTATAG
AAAGGTAGGTTGAGAGGAAATGCATTTTTACACCATGTCCATAGCACTCGTTTCTTGTTC
TGAATGCTGGAAATTGCCATTACGCCTGAAGTGTCTCTCTAGCGTAATATCGGAAACACG
CCTTCGCTCGCCATACAGTGAAGGAGTCAGCAGTCCAGTCCTCTCTGCTGCCGAAAGATA
TGGCGATCGCGCTCAGATTCGCCGCCACCCCGCCCCGCCTCGCCGCGCCGATACCTCCGA
CGGGTGCCCCTCGCGCACATGGAGGAGCTGCGCGCGTCGGCGCCCTGGTCGGGACTCGCC
GTGGCAGGATACTGGCAATGGCGGCCGCGGATTCCGCTCGCTGTCGGGCAAAGATAGGGG
GCGACGGCGACGGCGTTCTCGCCGGAGTGGCCGTGCACGGAGGAACTGGAGAGGAAGGGG
AAGATCAGCTGAGCGTGGTGATGAAGTTCGGTGGTTCGTCCGTGTCGTCGGCGGCGAGGA
TGAAGGAGGTGGCGGGGCTCATCCAAGCTTTCCCCGAGGAGCGCCCCGTCGTCGTCCTCT
CCGCCATGGGGAAGACCACCAATCTACTACTCCTCGTACGACTGCTTTCTGGTCCTTCTT
TAGGCTTACAGCCAAAAAAAAAAGTTGTTACTCACTGTTTCAGTATATCAACAAGAATAT
TCAGTCACGGGAGTGTTAGCTAATGTGAAATTGGATCTTTTGTCATAGTTCAGCTGAAAT
AGTCAAGAATCTGTCAATATTCAGCTGATGCTATAAATTACACCTTTGTGCGTAATTTCT
GTCGTAGAATTGCAGTAGCCAGTAGGTAACAATGGCTATAAACAATACAAAAAAATGTTA
ACTGAATGACTAAACCTTGTTTTTGGATTCACTATATCATTGTAGCTAAGATGTTTTGAG
TCTTTAAGCACATGTGGACTTAAAAGGCAATTAAATAGTTTGATATTTCTGCTACAATGC
ACGGCGTATGTGCTCGTATTTTAGGCTGGAGAGAAGGCAGTGGGATGTGGAGTGACCAAC
GTTTCCCAAATCGAAGAGTGGAACATGCTCAGAGACCTCCATATCAGGTACGTGCCCTTT
TAAGTCAGTTTACTAGGGGAACGCGCTTCACAGTTTTGGTTTACAGTGACTTGTTTACTG
TCAATCCAGGACAGTTGATGAACTTGGACTGCCAAGATCTGTTATACATAGTAACCCCGC
TAACTGACCTCTTTTGGAACTGTTTTCCAGTTTTCCTTGAAATGATAAGCTTATTGTCCC
CAGTGAACAAAATTTGCAGCTAAGCTAGATGAACTGGAGCAGCTCTTGAAAGGTGTTGCC
ATGATGAAAGAGCTGACACTTCGCAGCACTGACTACCTTGTGTCATTTGGAGAATGCATG
TCCACACGGGTTTTTGCGGCTTATTTAAACAAGATTGGCGTCAAAGCACGTCAGGTACTT
CTTGATGTTGTTCTTGATTTTCACCGTGAACCACTATGCTTAACAGTTTATGACTTATAA
CAACCTAAATGAATACACAAGAGTACAGTTACGTCTATAATTTTGTTATAATTGCATATA
AGTGTCCCTCCACCATGAAGGATGGTCTCAAAAGTTTGGTATCCTGTCCCTGAATTTCAT
ATTACAATTTGCTCATGTTCTCAACACATGTGTTGTTAGTAGCATCACACCACTTCTCAG
CATCATGCATTGCCATATTAGTGTCCATATTAGGTATGTGCTTCTTTCCCCTGAGGTCTC
AGCCTGGCGCAAGGGCCCATGAAGTTAGCTAGTCTCTAAATTCCCGGCGGATTAAGTTTC
TGCTGCATTTTTGTTTCATTATTTGGAATATTGTTGGTTCTAAATTGTCTTTGCTAATGC
CTTTGCAGTGTGATGCTTTTGATATTGGTTTCATAACGACAGACGATTTCGGTAATGCTG
AGATATTGGAAGCAACTTATCCTGCTGTTGCAAAGAGATTACATGGGGATTGGATTCGGG
ATCCGGCAATACCTATTGTTACTGGGTTCCTTGGGAAGGTATTCTAACAGATGACTGAGC
TTTTCGTTTGTGGGGCAACTTTTTAGTTCATTGCGGTTGCCATCATTTGCAGGGCTGGAA
ATCAGGTGCCGTTACTACTTTAGGCAGAGGTGGCAGTGACTTGACTGCTACAACCATTGG
TAAAGCCTTGGGATTGAGAGAAATTCAGGTCCATGTGAAATCTGAAATAGATAATAAACA
AACCATACTTTTGACTTCCGGGAAAAAATATACAGCCTAAAATTTAACGTTCCAGTTTGT
TATCATGCTAATATGTTTAGTAGCTGTATCCCTCGTTATTACAAGTTTTTTTCTCAAAGA
TTACCGCTGCTTTGTGATAGGTGTGGAAGGATGTTGATGGTGTACTTACTTGTGATCCAA
ATATCTACCCAAATGCAAAGACTGTCCCGTACTTAACATTTGATGAGGCTGCTGAACTTG
CTTATTTTGGTGCCCAGGTATGATGTGAAGTTAAGAACAAGATGTTCAAGAAGAAGATTA
TAACTGAACTTCATTTTCTTTAGAACACACACCCATGTATCAGGAGAAAGCGTCCAAATG
ATGCTGGAAAAACTGCACTGCAATGATATCTCAAAATGGCATGGAAACAGCATCTTGCAG
AAATGTAGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCGGACCCTTTCCCGGACCCTG
CGCAAGTGGGAGCTACATGCACCGGGCTGCCCTGTAATGATATCTCAAAATGGAGATAAT
TCATTTTTCTTTGTTGCGGTTCCATATCACTCCGAAAGTTAGAAAATGAATTGTGCGGCT
TAAATCCTTGCATAAGGAATACATGTTTGATTATATTTATTCTTCTGGGGGAACATTTTG
TGTTTTAGTCAAAGATCAGAAGATATATTGTTCTTCAGAATTAGATTTTTATAGGAAGTA
TTCATTATTTAGAATTAGAGGTGCACGGTGTACTTGCATCTATCGAAATGCATTATCTCA
GTTTCAGTTACCCTTCCTGGAGTGGTTATCAGGCTATGAGCCTTTCATGCCATGATTTGC
ATATTCTGAAAAAAGTTACTTCTGCTGTTAAAAAGTTATTTTTGTTTGGCTCATGGTTAT
TCATTGTTGTGCTTCTGCAACAGGTTTTACATCCACAGTCGATGCGACCTGCTAGAGAAG
GTGATATACCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTG
CCAAAGGAAGAGATATGGATAAGGTTTGTATGTAGCATATTAATTTAGTATGTTATCGCA
TCAGAACCATTTTACCTCTCAAGCAGCCATTGATTTTGTTTCCCCACTACATAGGTTGTG
CTAACAAGTATAGTGCTGAAGTCAAATGTCACTATGTTGGATATAGTGAGCACTCGGATG
CTTGGTCAATTTGGTTTCCTTGCAAAGGTACGTACATTGAGCCACTGAGACATTCAATTT
GGTTTGTGTTTGTTGATACTGATCATTATCCACTATCTGTACACGGTTGAGCAGGTGTTT
TCTATATTCGAAGATCTAGGCATATCCGTAGATTGTGTGGCGACCAGTGAAGTCAGCATT
TCTGTATCACTCGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGCAAGTTCA
TCCATGTTCATGCTAAGTGTCAAGTAGTTGTACCTGTGATTGAACTCTGTTTCTAATTCA
TGTGGAAAACTAGCACCATGGCTCTGTAAAATGAGTCGATGGTTTGTTTCTTGACCATTG
CTTCCGAAAATGTAGTATGTTGGCTCTATGGTTTGGTAGCATGAAGCAGCTTCCTACATT
GATATGCCCTCGATCTCCTCTTCACTGTCCTTTTAAAATTTTGTAGGAGCTTGACCATGT
GGTGGAAGAGCTGGAGAAGATCGCATTCGTCCATCTTCTCCAGCAAAGAGCGATAGTCTC
GCTCATCGGGAACGTGAGAAAATCATCGCTCATACTAGAGAAGGTATGGTCCTGATCTGG
TAACCAACTTTACAGAAACACGACAGTCGCAAACAAACATCACACTAACCCATATTCTCA
CCTTAAGGCTTTCCATGTGTTGAGGAGAATCGGGGTCAATGTCCAGATGATCTCGCAAGG
CGCATCAAAGGTAACCAACCAACAACGCCCATTGCATGAAACTACTGCATTATAAAGAGT
AAAAAGAACACCTCAAGGTGTCTGTCTATCTAACTAAAACATTTTTGGCACGGCCTTTGT
GAACATTTGCCAGGTGAACATGTCGCTGATCGTCCACGACAGCGAGGCGAAGCTGTGCGT
GGAAGCCCTCCACCAGGCCTTCTTCGAGGGCGACGGGGATGGCGATGATCGCCTGACGGC
GGAATTCGACGAGGAGGAGAACCTGCGGCTTGAGCTGTGATGAGCATTCAGTTAGTAGTG
TGTGTTATCAGTCAGGACGCCCAGAGAAACCGCTGCTGCAAGAGCAAAACAACGGCAAGG
TGTAGACTTGCAGACTGTGATGTATCTACACGTGCAGTCGCGGACGATGCGTGCGTGCGT
GCGTGCGCGCACACACACACACACACATGCACCAGTACATGCGATGAATGCTGGCTGAAT
AATCGAGTCAGATGACCGGACCTGTGGTGGTCGTCTCGACCGTCTGGTACGTGTAGAGGA
TGCACACGTACTACGTATACGCAACACATGTACATGTACCCGCAAAAAAAATGTACATGT
GATGAATAATCGATCGAGTCTAATGACCGGGCCCGTGGTCGTGTAAACATACGGACGACA
TTTGTCAAAAAAGATGATCTGCCACTAGTCTTCGATCTCGGTGCAGAAGTGCATACCACT
GTTGCCATGATCCATCTGCCCATATAAGCCTCCCCCATCGTTACGGCACGGGATGGATGC
ATGCACCACCAACGGAGACGACCAACCCACCACCACCACCAAGCAGGACGATGCGGCGGC
CGGCCATGGACAGTGCATGCATGCACGCGAAGGCCCACGCCATTGCCATGCTACCACTAG
CGCACACACACGGCACGCGTACGTATACGTAGCATGAGGAAAACGAGGTCATGAATGCCG
ACCGAGCCGGCGGGCGACGGGCCGGCCGCCACCCCGGCGAACCAAAGCCGCGGCAGACGA
GGCGAGAGATCCGAGGCGAGCCGCAGCGCCGGCCCACACCCCACGGGCACACCACCCACA
CATGCTCA
