morexGenes - Barley RNA-seq Database

Contig contig_46049
Source Contig contig_46049
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_46049 (8832 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_46049

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61960	1	233 bp	AK356973	Available	Available	None
MLOC_61959	1	1602 bp	MLOC_61959.1	Available	Available	LOC_Os04g45070.1, FRAME:+1, EVALUE:2e-35, 13104.m04514 protein remorin, putative, expressed
CDS Structure of MLOC_61960

CDS Structure of MLOC_61959

Contig Sequence (8832 bp)

>contig_46049 8832 assembly3_WGSMorex_rbca.fasta
AAAGGTTTTGGGCTTTAGTCCCGACACTTTAGTCCCGGTTCCGGAACCGGGGCTAATGAG
CCTATGGAACCGGGACAAATGTGCCTTTTTCTACTAGTGGTAGTCATCGTAAGCCTTTAA
TCCCCCCATAATGCGGAAAAACAATGGTTTTTTGCATGCAAAAAACGGCGACGAAACCAG
TGATGATCCAAAAAAGTTAGGTATGGAGCAAAGTAGTCCTTCTATAGTAGCCGTGCGCCG
CAGACCCTATCCCGATTGATCATTCTTCTTTTTTTGATTGAGCCCTTGAAATTAGGAATA
TGCTCTGCCGGTCCATTTACTCTTACATGTTCATGAGCATGATCATGTCCAGTTCTTCGT
GTGAATTCAACGAATCGAAGAACTCATCTTCAATCATTTGATCGAACTATGTCAGTCCAT
ACTCCTCGTCCAACGAAGCATCAGAATTCATTGTTTTTCCTAAAAATCGCAAGAAACGGG
CTGGACAATGTATCGCAAGGGCCAGCTCGAGAATTGTCGGGCGTACCACAGTGGTGTCCG
GGCCGGCAACGACGTCGTGGGCTGTGAGGATTGAATAGAGGAGTGTTGTGTCGATGTTGT
CGGCGCACATGCTCCGCAACGGCGGAGCAGGTGAGATACGTTGGGGAGGAGCAACAGAAG
ATAGCAAATGGATGGATGGGGTAGATTTGATGCAATTTATGATGGGGTAGGCCTCTAGGG
CGGACGCATCCGGACGCCTTCCTTATCCGTCTTTGATTTGGTTGATCAGCCCGGGTGTTT
GAGGCGTTCACGTGAATCATATTTTTGTGACCAGTCAATGATCAAACCGTATGTGTGAAT
GTTTGGAGCGGGTTTGAGATGCTCGGCTTACCCGTCAGAATGTCATACCTTATTTCTATA
TGTCTGTTCTTGCACGCCCAGTTACCGGTGAGATTGAACGATGTGCAAATGATACAGCAG
GATGTCTCGGTAGCTAAAAAGTAGGATCTGATGTGTGTTGTACTCCAAATTCCGTGCGTA
CGTAGCGACGACGTAACGAGGAGCGTCCAAGCAAGATCCAATTGTTTGTAACGCGTATAA
CCCTGCTTAGCACCTGGCCGTTGCCAATAATTTGAGTGTGGCATGGTAGCTGTGGCTACC
TGTCCTCGCCAGCAAAGCATCTTCTGTTCATGTCCATTTGGATGCTGAACGATTGTCCAA
TGCTATGCTTTGGACAGTTGCGCAAGCTAGCTAGCTTCCTTATATTCAACAATTAGCTGG
TCAGCTGTTAAGATGCTTTGGCTTAGTTAGGTTGCTGCAGCATCCAGCTTCATGGCTTTG
TGCAAACGGTTTGTCAACTTGGAATTCTTGTGGTTTTCTTTTGTAGGACGACGGAGGTTT
TTGGGCGGCAAGATATAAGCGCCAGCTAGAACTTGGGACATACTAGCAACGAACAAAATC
TGCTTGGGAAATGAGTGTCGAAGCTTGGCTACATCCTACATGCTCGACGTATATTGTACC
GCATCATGCACGTATGGTGTGGCCCACACATGCATATACACCGACAAATGTACTCCCACT
GACTGGTGCCCGGATTCAGAATACAGAATACGAGGATCCAGTGAGATCCAAGTCCAGAGC
TAGCGCGAGGACCAAACCACGGATTACCCCGATACGTCGGCCACCGCCCAAGAACTGGTC
ATGTAGTACGAGTACACCTGTCGACCGCCGGCTGCATACGGATACGGCCACATGCACCCG
CGCGCGCCCAAGTTCCGCGGGAAACGGGCGTATAACGGTCAGGTCTGGTCGGTCCTTGCC
GTCACACGCCCAGCCGGCAGCGGGACGGGCGCGTCAAGGCGATGACAGCTGGGGAAAATC
AAGCTCCGCGGATCGCCCAACACCAGCCCAATTGTCTAGTCGGCGAGCCAGCGCGCGCCT
TTAATTCCATCGCCGAAAATACGTATCTGTTTATTCAAGAATTGTTTAGGAAAAAGTTGG
GAACGGAAGAAAGAAACCGGCACCCGTATCCTCCCCGCTGAGTAATGCTACACCTACAAA
GGCTTACTTAAAGATTTTACGTACAAACTGATGTGTAAGATTGTGATGGTTATTGAGGGA
TGAGGGGCCCCACCCTTACTGAAAATCATGGAAGGAGAGAAGAGTTAGTTTAAAAGGTTA
AGTAAACTTTTGTAAGTTTTTATTGATCCTCCCCCGCCCTCGCACTCCTCACCCATGTCA
CCGTCCGCCTTGACGCCGCCCGGTGTTATCACGTGCGCCGCCACGCGCAGCGTCTACGTG
GAGGCCACAGGCGCAGCGGAGCCGGCCGACTGGAAGCCGTAAAAGTGTTTTCTAGTAGGT
GACCGGCGGCGATGCCGTTCGTGCGCGCGGACGGACGCGCACCGGCCGTCGTGCCCGCCG
CGCTCGCGCGCTGGCTCACGGGATTCGCGAGCTCCGCGGGGGTGGGCCAGCGCGCGCAGC
GCAATCGCGCTGGGTGGGTCGATCGGGGGCCCCTTGCCTGCTCCCCGCCATGCGCCATGT
CGCCGTCAACGTACCGCTCATGGGTTTCGTGCCCGGCCCAGTTTCGCAGCGCTCGCTTGC
GACACGCGCTCTGTGATCTCAGCCACTCCATCCGGATATGGACACCCCCAGCGCTCGTCC
GCTCACCTGCCCCTCCCAGCCTCGGGTATTTGGGTAACCGCTACTACTTGTCAGGACCAT
GCAAGCAAAACTGGATTGGTTCAAGATGGATGAACCGCTGTTGATATCGAGAGCAGGCTT
TGCCGTGAATATATATGGTTAGACGACGACGCTGCGAAGCTATCTATAATATGCATCCAC
CGTTCGACCCTGCCATATCACTTCACCCCATACTGTCACGCCAAAGCCGGCACCACCCCC
AACCTACCACGTCTCCCCGCCCGCGCCCGCGCCAGCTCCGGCTTTGCCCAGGCACGTCCG
TCGACACAATTCCGATAGTCCAGCCAGCCAGCCATTCATCCGCTGCGATCTCTCTCCCTT
ATTAGTACGCCCCCACCCTCTCCCTCTCCTGCCCACAGTCCCACTCCCACGACACCAACA
GCTGCGCCAACAGCAACAGCCCAGCTCCCCACTACCAGACGTACCACGTACAGAGCTTAG
CACCACCCATGGCCGCGGAGGAGCCCAAGAAGGTGGAGGTGGAGGCGGCGCCGGAGCCGG
AGCCCGCACCCCCGGCGGCGGAGCCTGAGGCCCCCGCCAAGGACGTCACCGAGGAGAAGG
CCGTCATCCCCGCGCCCGCGCCCGCCGCCGACGAGGAGAAGCCGCCCGTCGACGACTCCA
AGGCCCTCGTCGTCGTCGAGAGTAAGTCACCCTGCCGCTTGCTCTGCGCTGTTTTGCTGC
TGCTGCTGCTTCAGTTAATTTGCTCTTGCTTCGGCAAGGCCGGCCTGTGGTTGAACTTGA
ACGATGGGAAGGGGGTGGGCGCGCTAGGATCTGGTAGTACGAGTAGTAGGAGCGAGCAAC
TTTTCCTCGGTGTTAACAGGAGATGAACAGTGGTGGTAGTACTTGGTTGAGGTACCGATG
ATCCTGCGATATTATTTGGAGACCTTTTTCTCTTTCCCTTCCTCTCCTTATTTTTCTTGG
CTCTCGTTGTTACACCTAGAGTACGATTAATTCGGTAATTTCAGTTACGTGTTCATAGGG
ATTACTAGCCAGCGTTAGTTGCAATTGTTATTTGGTTTGTGCTTTGGCTGCTTTGAGAAT
TGAGACACTTCCGCTTATGTGTTCTTTTTCCTGAATTGTCTGCTTGCGAAATATATTAGC
ACTTGGTTGGTGCCGCAAACAGCTCTGATAAATATCTCAAATGTTTGTCTGAATATTTTC
CCTGCTTTCTACTCCCTCTGCCCGTCGCAACTTTATACTAGCTCTGGTACAAATTTGTAC
ACTTATTTTAAGATGGAGGTAGTACTAAATGATTTTGTTATGAACAAAAAAACAGCGGAT
GCAACCATGGTTGCAAATTAGTTTGTTTCTAGTGAACCGGAAGTGTTGCAGAGTTTTGGA
CGAAACAAAAACAGAGAGCATCTTAGGACAACATAGATATAGCTAAGGTGATGCTGGCCG
TGTGTAGCCTCACTGAAAATAGGTTGCACAATTGTTCTGGGTTGGAATTTAGAAAAGATA
GTCGTTAGAACTTCACTGAATTCCTCACTCATCCTTATCCATTTGTCTTCTTTCTGCCCC
TGCTCTCCGTTCTTCGCTCCCTCTCTGTCTTATCCATCCCAGTTTCCTTTTTTGGAGGAA
TCTCAGTTTCACTTTAACACCCTAGAAAGTGTCCAAGATGGTACTATGCTGGGGGAAAAG
GAACCAAACGGAAGCAAAAGCCACATGAAGAACAACCTTTCCCGAGCTATGTGACTTGTG
TCTGCATGTTCATTGCATTTGCATATTTCTTCAACCATGCAGATAGTGTTGTAGTAGTAG
TTAGTGTTTGGGTTTATAGAACAGATAAAACCAGTACACGCGCACTCATTAACAGATAAA
ACCAGTACACGCGCACTCACTAACTGTCATATCTTCTTTTGAAAGGAATAAAGCTATTGT
ATTTAAGAATGGCATATTGTAGTTTTGGACAGGCAGGCAGTTGCTTTCTGTTGCTGCTCT
AAGTCATCATGGATGATAGATATACTACTATGCTATAAATGTTCAGTAGTTCAGAGTCTT
GCATAGTTGGAAAGATTGTTCAGTTTTCCTGGTGACCGTATGACCGTATTACTGTTTTGA
AGTGGATATAAACATGAAGTAAGTATGTGGTATCGGAACGAAATCCTGTCTATGATACTT
CTCCTCTGGTTTGGCACTCAATGACAGCGTGCTCCCCTTCCCACGAGAAAACCAAACACT
ATGCGAATAAATAGCAACGTTGGAAGAAACTGCAGGGCCAATTAGCAACAAGCTTTTAAT
CATAAAAATGGGCACCTAGTAGTCCTCAGAATTATGACCATGCTGGAGTGTGAGTCAAGG
ATATTAATAAAACTGTGCATTGGGTTCTGAAAGTTCGGTGTATGATGTCGTTGTTTAGCC
ATTCCTTTATCCAGAAGGACTGTAAGTAGCTTTCTATCTTACTCCGTTTGCGTCTGTGGT
TGGAGAAGTTCAGAGAATAAGATAAGTCCTACACAAGTCACCATTATATAAGATCTTAGT
ACCAAAGGACACGCTAGAAGTTAACTTCAATTCCACGGATTATATAATGCTCGCGACACG
AGTGGGTACTAAAAATCATTTGACATTGTACAGACAGATGCTAGCTTCTTGCTGCTTAAT
TACTCTCATATCAAATTGTGACGTTACAACTCTTGCTCATAAGATACTTCTACATTTTTC
TGCGTACCAGAGGTTGCAGATGAACCTGTTGCTGAGAAACTCACAGATGAGAAAGCTGCA
CACGGCGGCTCAAACGACAGAGGTAATTATTGAATAATTTGAATTCTCTTCTTATAATAG
AGTACACCTATGCTGACAAACTACCTGAAAACCTGCTATGCAGACCTCGCTCTTGCAAGG
GTGGAAAGCGAGAAGAGGAACTCTTTAATTAAAGCATGGGAGGAAAATGAGAAGACAAAG
GCTGAGAACAAGTATGTTACTATTTATATTTATCCATTCATGCTTTTTCAATGGTATGGT
AGATTTATCACTACTCTGTTAGATTGGATATGCATGTTACATATCTCAAAGGTGCGCTTC
AGCCACTTTAATGGTTTCAACTAGGAAACAGAGCCCATATAAAGCTTCATGTTAGTAATA
TGTCTAGTCTTACTCCCAAGATATGGAGCATATGTCAACCCCGTCTAATTCAAACAATGA
TAAGAACACCTACAGCACAACTACCAACAGATATCATGAAAGAAGCTATGTCATTTTGAA
GAAAATGAAGAAGTTGTATACTTATAGCTAAATTACGTTCTTGAACACGTTCATTAAATA
GATGATGTAAATTTTCCTGATCTTGATTCACATCAATATCACAGGGCTACTAAAAAGGTA
TCTGCTATTCTCTCATGGGAGAACACCAAAAAAGCAAACATAGAAGCTCAACTGAAGAAG
ATCGAGGTACTTTCATCGTTACCATTCTTTGTATATTACATCAAAGAGTAAGGCCGTATA
TTACATCAAAGAGTAAGGCCTGTTCTTGCCGTCGATATCCATCTGCAGTTCTGAACATGG
CACTCTCTTCATATGCCATCCTGCAAACTAAATCTTGTGACTGTACACTTTCAGGAGCAA
TTGGAAAAGAAGAAGGCTGAATACGCCGAGAAGATGAAGAATAAGGCCGCAATGATCCAC
AAGGAAGCCGAAGAGAAGAGAGCGATGGTCGAGGCAAAGAAAGGGGAGGAACTCCTCAAG
GCCGAGGAGATGGCCGCCAAGTACCGCGCCACCGGCAACTCTCCCAAGAAAGTCATGGGA
TGCTTTGGGGCCTAAAGTAAAAACGCTCCTTCTTCGCAAATGGAGCAAGAGTGAATGAAG
TGTTTATCAGTGGTTGCTTGCTTCCTTGTTTCTTTCATCCGTCCAAGTTGTGTAGTGTGC
CTTGTGTGTAAAGTCTGCCGTTTCTGTATATACATATTGCTCCCAGGACAGGTGTTCGGT
TGTGTACATCTTTCATGCTTGACAAGCAACATTCTTATGTGTAGTTAAGAAGTCACATTT
GTTATTACTCTTGACATTTAAGCAGTCGATTTTTGGTCTCATCCTGGTTTTGATATTGTT
TTCTCACTATTTTGATTGAATTGATCCGTTTTAGCCTATGTTTATGTTGAACATGTATAG
TCTGCGTACACGTCTATAGATCTTGGTTTGTATATTGCACCTGTCACGTCTCCCTCTCAT
TGTAATCTGTATGTAACTTGAAAGACGAGACATGAGTTGCACCCCTTGTACCTATATATG
TGCTTGGTGCACCATCAATGAGAATCATCGATGCATGCAATCCCTAACTTACATGGTATC
AGATAGCACGCGGATCCTACCTCTTCTGTTGCCCTAGCCGCCACCGCCGCCGCTGCTGCT
ACCCAGCCGACGCCTCGCGTCGCCACTGTCGCCTCCCCTACCCTGCTGCTGCCATCCATC
TCCACGCAGTCGCGCCCTAACCCTACTCTCCCTCCACAAGCCGCCGCCGTCGCCACTAAA
CCCTAACACCTGCCGCTACGATATGCACGTAGCCGCACCCGCAACCACCGCCGCCGCACC
GCGCCTTCCCTCCTGTCGCGTCGCCGACGTCATGTCGGTTAACTCCTCCCTCTCCGGCAA
CACCAACCCCTTCATCCATGGTCGGGTCCCCGTCATCCTCGATCCCCAAGACTCCATGTA
TTTCGCGTGGAAGACCTACTTCTCCCTCGTCGTTCGCGAGTACAATATCGCGGATCACAT
CGACGGCTCCGGCGACTCTGGCGACATGAAGGACGATTTCGAGTGGACATCCATCGATGC
TACGCTCATTCGGTGGTTCTTCCTCATCATCTCCAAGGATCACTTTCACACCGTCGTCAG
CGAGGGCGATGACGCGCATGCCGTATGGGTCAAACTCAATGGCCTCTTCACCGACAACAA
GCTTCAACGTCGCGTCCTCCTGCAGCAAGAATTCTTCAGCTGTCATCAAGATGATCAGCC
CGTTGATGATTACTACCTCCGTCTCAAGATGTTGTCCAATGAACTCCACGACATTGGCGC
CAAGATCGATGATGACCTTCTCCTCAGCACGCTTACGACCGGCCTCGACGAGGACTTCGG
CAACGCCGCCTCCAACCTCACCTTGATGACGGAGCCCTCGTTCCCCAAGTTTGTCGCCTA
TCTTTGCTTGGAGGAACGACAGATGAAGCAGGTCAAGCGGCGGGTCCAGCACACCGCCCT
CGCCGCAGGCACCTCTCACGGGCCACCTCACGCGCCTCGGGCCCCGGCACCTCCTGCGCC
CCCGGGGTTCTTCTCCTTGCCGCCCACGCCGCCCGTGCAGCGGCAGCCGCAACAGCAGCT
CGGCGGTGGCGGCGGCCGATGCAACAACTGCCGCGGTGGACGCCAGAACAAGCAACAACA
GCCGCAACAACCGGCGTACGGAGGGCGCCTCGTCAGCAGTACCCTACCCCGCCCTGGACC
TACGACACAAATCCGTGGACTGGAGTCATCCATGCCTATTAGATGCTAGTGCCTCGGCCC
CCTCCGCCTCTTCAACAAGCTTACCTCGCCGTGCGTGGTCCTGCTCTACCCGCCCCGCTG
ATGGTTGGCGGCTACCCTGCTGCTCTGATGCCTTCCTACGGAGGGCCCCCTACGGCGGGG
CCTCCCCACAGCAGGCGCCTTCGCCGTGAGATCCTGCTCTTTTGGCAGCGCTGCACTCGC
GCCCCCCTCCCCGAGCAACTATGGGGGCGGCGGCGACTGGTACATGGACTCGGGTGCCAC
TGCTCACATGACCTCTCATACCGGTAACCTTATCTCCTCTACTCCAGTTCATACTCCTAC
TTGTATCACCGTTGGTAATGGTTCATCTTTACCCATCACACATATAGGGCATACATCGTT
TCCCTCTTCATCTACACCTATCAACATGTCTAATGTTCTTGTTTCTCCCGAATTAGTCAC
GAAACTTTGTTCTGTTCGTTGCCTTGCTCGTGAGAATCCTCTTACTGTTGAATTTGACGT
TGTCGATTTTACTGTGAAGGATGCCCCTACCCGGATGGTACTGCACCGATGTGATAGCTC
TCAGGATCTCTACCCGGTGCATCCCTCCGCCGCTGCCTCCACCCGCCCCGTCTCCCTCGC
CGCTGGTGTCGACCTTTGGCATGCTCGCCTGGGCCATCCTGTTGGAATTATGCCCTAGCG
GCAATCATAAAT