Contig Data
morexGenes
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Map Locations of contig_46024 (7027 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46024

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61940 2 1937 bp MLOC_61940.1 Available Available LOC_Os10g38910.1, FRAME:+1, EVALUE:1e-39, 13110.m03544 protein expressed protein
MLOC_61939 3 1384 bp MLOC_61939.3 Available Available LOC_Os10g38920.1, FRAME:+2, EVALUE:2e-179, 13110.m03545 protein protein kinase domain containing protein, expressed





CDS Structure of MLOC_61940






CDS Structure of MLOC_61939






Contig Sequence (7027 bp)

>contig_46024 7027 assembly3_WGSMorex_rbca.fasta
CCCGCCGCCTCCGTGCGAGCCGCCGTTCCAGCCGCCGATCGAGGTCATCAAGGCGGAGCA
GAAGGCCCCGCTGATCACGGTCGAGTCTGCGCGGACCAGCGGCGAGGCGGCGACGAGCGT
CGCCGGGAGCGCACGCGGATGGAGCACCGATAGCGGCGCCGGCGGCGACGCGGAGGCCGA
CGAGTCGCAGCGCGGCTGGGGCCGCCGCTACACGCGCCGGGAGCTGGAGGAGGCCACCGA
CGGGTTCGCCGCCCAGAACGTGCTCGGGGAGGGCGGCTACGGCGTGGTCTACAAGGGTGT
GCTGCGAGACTCCACCCTCGTCGCCATCAAGAATCTGCACAACAACAGGTAAAACCTCGT
TCCAGAGCTCGAATTTTTTCGGTATCAATCGAGTTTAAGCACATTGTTCAACCATTTCAA
TTCTCTGTGTTGGCTTCGAAATCTGGAAAGACTTGAAATGCAAAACTCCCACTGAAATCG
CACTCTGCTGTTGAAAATCCTCTCAAATCCCGATATTGGTGTGATCAGTAGTACGAGTGT
TCCTTTCCCATTCAGTTGGGCGCAACAAACTCGGGCAGTTGTCAGATTTGAATTTTCAGA
TCACGAGTAGTACTACTCCGCAACCATGGCCAGTAGTAACTGCCTCCAGCGGCCTTCTCG
GACACCAGATGTTCAAATTTCAAGACAGCGATCACCAACTTTTCCATCTTCATTTCAGGG
GCCAGGCCGAGAAAGATTTCAGGGTGGAGGTGGCGACGATCGGGCGGGTTCGGCACAAGA
ACCTGGTCAGTCTGCTCGGCTACTGCAGCGAGGGCGCCTGCAGGTAAATCAGCAATGCAA
TGCCACATTTCTTCAGTTACCTCTGCCTGCCCTCTCTTCACATCCCTTAATTCGATCCAT
GTCACTGCTTTGCTTGGATGGATGGATGGATGGATAGGATGCTGGTCTACGAGTACATGG
AGAACAGCAACCTGGACAAGTGGCTACACCATGAGGAGGGCGAAATCAGTCAGCTCAACT
GGGACACAAGGATGCACATACTTCTCGGAACCGCTAAAGGGTACTGTAATCCTTCACTTT
CCTAGTATCCTCTAACATGTGATTGTTCAACAAAGCATGGATTAAAAAACAAAAAGATAA
TACTATGGCCGATTAGGAGTAGGGGAGAAGTATGCATGGTGCGTCTGAAATCTGAAAACA
ACGTTGGCAGTGCTACTCTTTGCTTAAACGGCACATGTGTCGAACACCCAAAGTCTGAAA
CATATGCGCACTAGCTACAACTGATGTGCATCCTGTACCTGATCTGTTCAGGTTGGCGTA
CCTTCACGAAGGGCTGGAGCCCAAGATCGTCCACCGAGACGTCAAATCCAGCAACATCCT
CCTCGACGGGCAGTGGAACGCCAGGGTGTCCGACTTCGGGCTCGCCAAGCTCCTCTGCTC
CGAGGCGTCCTACGTCACCACCCGCGTCATGGGAACCTTCGGGTCAAGCCTCGACTGAAT
TTCCATGTCACCGTCGCGTAGAGTTTGTTTACATGACATTCGTCGCGCCGCGTTGCAGGT
ACGTGGCGCCGGAGTACGCGCGGACCGGGATGCTGAACGAGAGGAGCGACGTGTACAGCT
TCGGGGTGCTCGTCATGGAGATGATCACCGGCAGAACTCCGGTGGACTACACCAGGCCGG
CCGCGGAGGTCAGCTGCCCTCACCGTCGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC
TCTACCGCACTTTGATCGGCTTGCACTGCCGGTGCAGTCTTCTCTGGTGGAGCTGAGCTT
TCCGTGCTGACGCATCGCATCCGTGGTGATTCGTTTCAGGTGAACTTGGTGGAGTGGCTG
AAGCGCATGGTGGCGGAGAGGAGGGTGGAGGAGGTGCTGGACCCGACGCTGCCGGAGGCG
CCGCCGTCTAAGGTGCTCAAGCGCGCCGTCCTCGCCGCGCTCCGGTGCGTCGACCCCGAC
GGCACCCAGCGGCCCACCATGGGCCACGTGGTGCACATGCTCGAGGACGACCTCCGGTTC
AGAGACGTACGTCGCCGTTGCCATACACCCGCATTGAACTGCAACTGTGTTTTTGGTGTC
GTCGGTTGGGTTTCAACCATGTGCTGCTCCATGCAGGAACTCCAGCTTGCCAGGGGTCTG
TCGGCCCACGCGTCGGCGTCAGCGTCGGCGTCGTCGTCGTCGTCGAGGAGCTACCAACGC
AAGGAGTGAACGCCATGGACGTGGACGGACGAATGGCTGTGTTTCCTTGGCATTCGCGCA
CCGAATGTTCTTGTACAAGCTAGTCGATCGGATCTTTTTTCTTCTCCGGTTGTGTTTGTT
TGCATGGCAGCAATGACTCGATCAACACAGCAGGCACACGGCCGGTGCATAATCAAGCCT
AGCAATAGTACGAGTAGTTCACAACTTTATATGATCCACATAACGGAAGTGCATCTATGC
TTCCCCAGAGTACTACCTGTGTCACTTTGGTGTCTTCTATGGTTGCTTTAGTTGTTTAAT
TTCGGCTACAATCCAGCTCGAAGCTTGCGTGGTTGCCATCATTCACAACGCTCGTCACAC
ACTTCAGAAGTTCAGCCCGTACGTACGGTACGACTCGCCATGGCACCACTCTCACAGTGG
GTGCCCGTGTCAAGCAGGACGCAAGAAAGAGATGTCTTCAAGTGAGAGCCGTCCCATGAG
GTATGGACGTTAGGCCAAACGAACAGCGCGTGGACGGACAGGTCACGCGCCCTTGTTCCT
CTCGCCCGCCTATAGGAGACACATCCGTCCCATTTTCCCTTCATTTCGTCCAAACTTTCC
CGCGCCCCTTCCCTCCCACCTCCATGGACGGCGACCCGATAAACCCTGACGATGCGGTCG
GCCGCATGCCTTGCGGCAAAGAAGAAGGGACCCATAAAGGCTCGATCCAAATGCACACCG
AAGGAGATCGCCATCCTCGACACCGAAGCGATGAAGAGAAGGGGCAGACAGGCAAAGGCA
AAGGAGTTAAAGACGGTTCCGGCCTACATCGTCGAGGCCGACACCCAACGTCAAGCGGGT
CATCTTGCCGACGTTGAGAGAAGGAACCCGTTGTCGCCAAGGCGCATGCCCTTCTCATGC
TTGGGTTGGCACAACCAGCGCCAGCCATCTTTCGGTCGCTGCCATGGCCACAACGAGCAC
AGGATCATCGGTCGGTCGTCCTACTCGGTTCACTTCACCGAAATCGTCCACCAGACCCGG
TCCACTACCTTACGGCCATGGGCAGACGTGGTTCTCCACGTCGTCGGAGGGCAGCGTGGT
CGCTCCGACAACGCCCACGGGTGTCACGACCTCAAAGTGGCGTCAGGGTACAGTAGCGCT
GTCCACACGTCCAAGGGACGCAAAGGAAACAATTTGAGTTGTTTCCGACGGCAAGCTTGC
GCCCGCAAGTTGTTCGATGTAATGGCACAACCGACGCCCATAGTTGAAGACCGTGATTGC
TCGGCGTTCATGGAGAGCGTCATCTTCGAGGGCCGTGGCGAGGCCTTCCAGCACCATGGA
CAAGGGCGGACTTCCAATCCCGACGAGACCTAGAGCCAGGACGGCCGCGACCACTATGAG
GACACTGATTTCGCCGGCCATGATGAAGAGGAAGACAACCATGGCAACTCATGGCATGAA
GATGATGACTTGTATTGTGAAGATGTGGAGGAAGAGATCGACATTTCGCAAGAGCCATTG
GTATTTATCAATGAGCTCACCCAAAGGGTCAAGGCACAAAAGAATAAGCAAAGTATTCGC
ACGGGGTCATATACCCAAAAGGAGGACAAATTGATTTGCGAGAGTTAGATTGAGATAGGG
GAAGATCCGATAAGAGGTACCGAGCAAAAAAGGTGCCATCTTTTGGGGGAGGGTTTACAA
AACCTTCCGTGAGCGAAGGAAGTTTGCCCCCTATCAATTTGAGAGCACTCGCAATATCAA
CTCAATCCAAAAGAGATAGGGGTTCATACAACAACAATGCAACAAGTATTGTGCAGCACT
TGAGAGCGTCCAAACACGTCATGTGAGTGGCCTTGGCATTGGAGACTTGGTATGAACCTC
CTGCCTTTTCATTTTTTGTCCATTCATGTTGGCATGCTTTTCATTTTCATACATGTTGTG
TCCTTCGCTATTACATTAGCATCATCATCAATGATTGTATAGGCATTTCTTTGGAAGCAT
TCAAGGCCTGTCACAAGAACAAGCCGTTCACTCTCACGCATTGTTGGGTGCTCATCAAAG
ATTGTGGCAAGTTTAAAGCCCCATATGCCGCTTGTAAGAAGAAAGGAGGGAAGAAGGTCG
TGGCTGATGGGGGAGACTTGCTCAAGAGGCCGAGGGGCAAGACAAGCTCGAAAGCCGATG
AGAGGCGTGATGCGTCTTCCATTGCCTTGCAAGGCACTTTGAAGAACATGATGAGCCAAA
AGAAAGTGAGGGACGAGAGGGGGAGTAAATGAAGATATATCTAGAGTTCCAAACGAAAAA
GCTTGCCATGGAGGAGGTCGCAGAGAGGAGGAAGCTTGATATGAAAGAGGCAATGAAGAG
GAGGAAGCTTGACATCGAGGAGGCCGCTCAACTCAAGAAGCTCGAGTCACCATGGCGGAC
ACCAAAGCTAAAGAGGCGGCATCCGCGTTCATGAGCATGGACAAGACCAACATGTCGCCA
GAGAGGAAGGCTTGGTTCGCGAATCGACAGAAGGAGATATTCGCCCGAGACGGGCTGAAC
TAGGTGAGGCCTCAGGATGTAGCCAACATCCGTTCATTTTGAAGGCTGACTGGTGTGTCG
ACTACTGTCTTTGTTACTGTCGTCAAAAACTTGTTCATTTTAAGGACGGGTTCCTGTATC
AACCGCTAACTTTAAATATTTGTTGCCGGCATAAGACTGTGGCCGACGTGAACTAGTGTG
AACCGCGGCCGCGGTGAACATCCTTCTTTCTCATGCTTGCATGCACGAGGACAAGATGTG
ACCGCGCTTTGGGCACCCGATGAATGCAATCCCAAACCCTAACGTACACGGCTCCATTTT
CACGTCAAACGGGAGAAATCCGAACAAAAACGGACGTCTAACACGGGAATACTGAAACTG
TCGAAAATCTTCAGAATATTCAGGCCTAAAGCTGACACTCAACCGGCACGCAAGAAAGAG
ATATTTCTCATGGGGCCGACACACGTGGCACCCAACCCAGGGACACATCGAGAATGCAGT
TACGCGCCACCACTGACCACTGCCCATGGCGATAAGGCTACTGCCACGAGTGGGGAGAGC
AGCTCGTCGTCTCCTAGCAATCCACCGGCGGCGCGCATGGCCGCCTTGCTCCACGTAGCG
GCTCTCCATCCACCTCGCCCCGCCCCAAACCCCCATCATCCATGGACGCACAGCCGGGCC
ACCACGCCCATCCTCTCCCCACATGACGCAGCGCCGTCCAAGCGACGACGAGCTCCAGCC
CGGCGGCTACACGCGGCCAGCAACGGCAGCGGCGTCGGCACACCACCAGCCGCGGACAGC
AGGAGCGGCAAGAAGCCGAGCCGCAAGGAGAAGCAGCGGCAACAGCAGCGGGTGCGGGAG
CGGGAGGAGCAGCAGCAGCTCCTCCTCCTCAAGGAGTCGTTCGTGGAGGCGGCCCGCGAG
GAGGAGCAGGAGGACGGCGGCGGTCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTCGAC
CGCATCCTCCGGCGGATCCTGTTCACGGTGGGCGTCCCGATGGCGTCCGGCGTGGCCCTC
CTCAACGTGTACGACGCGCTCAAGCGCGGGGGCGGGGCGGAGGTGCCGTCGTGGGTGCAG
CTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACGCTG
TCGGCGAGCTGGGACCCGGAGAAGGAAGGCTCGCTGCTCGGCGTCGACGAGGCCTGGACC
AACTGGCCGGAGCTGTGGAAGGAGGAGATCGAGAAGGACAAGAAGTAGCTGTGAATAGAC
TAGATATTTTCTCCACTGGACTGGCAGTACGCTTTGTTGTCGACGATTGATACTCGTACA
GGCTACAGCAGTGAAACTATGAAACAATTTGGCAGTGGCTTTGTAGTTCTCTGTAATAGA
ATGGCCAAAACTGAACACTTGACAGGAAAAAGGGGAAAACTGAGTGAACCCCCAGGCCAG
CGAGAATACAACACCGATGAGTCTGTTGCTCTCGTTCTCCTAAAGCAGATGGATGGGTCG
TTGATCAATCGAGCCACCTCGTGACGCCATCTTCTTCGCTCACCGCTGCGAGGATTTCAA
TGTAGACCTCCAATACAGCCTACACACAATTTAAACCACCATCAGGAAACAAAATACTAC
CAACACAACTGTTCTTTTCAAGTTAGTCATGGCAGCAGAAATTACTGGCCAGGAACATTG
TGATGAAAATAAAAATTCACTATTACCATTGACGGGGACAGATGTGCATCTTAACTCTTA
AATATTGATATTATGTGCATAAATTGGTGATAGATAAATGAGCATACCAAAGGATTTCTG
TGGTTGACCAGTTTGCAGCATTCCAGTAAAGACCCTTCCAGCGTCCAGCTCTCCCAGACA
TCGAATGCATGATTGGCAAATACGAGCTCCGCCTTCTTATTAACCTGGAAACAAGTAACA
GGGGAGTTAAGCATAGTAAATCGGCAATCTACATAAAGCATTTCACTTTCAATGATGAAA
TTATACATGAATCGTGGAATGTACGGCCAAATCAGTGATCCTATTTATAAACTTCTCAAA
CATTCTGCATGGAGCGAGCACTTCATAACTATCTAAAGTAAATTCTCTAAAAAAAGCTCG
AACTAAAGAGGAATACCAGATGCACTAGGGCTTATTTTAAGCATATCGTGGAATCAAGTT
GGTACATTTCAACACGGGACAAAAACGTGAGCATAAATGTCATTGCATCTAAAAATTACC
AAGAGGTTCATGCAATGAAGAACACCGTTGTATAGTCTTTAATTTCACTACTACTCCCTC
CGTTCCT