Map Locations of contig_46009 (7917 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_46009

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61928 2 595 bp AK249698.1 Available Available None





CDS Structure of MLOC_61928






Contig Sequence (7917 bp)

>contig_46009 7917 assembly3_WGSMorex_rbca.fasta
ACTACATCCAGATGTATATAGACATATTTTAGAATGTACATTCAATCATTTTGCTCCGTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTAGGAACGGAGGGAGTACCAGA
TATCACCTTTGTTAGAAGTTAACCTATAGAACGCCACACTAACTATTTGTATATAACACT
GTTTGTTACTAAAGAAAACAAAAACTGAAACAGATGTTAAGATTTGCAAAATTTTAATAA
TCATCCTCTGTCTTTGATAACTGGCTGGAGTCTCACGTTCAGTATCCCCAGCCCATTTGT
ATAACATAACAGAATGTTTCACTATTTATATGATAGTAAGCATTTTCCTCCACAGGAGCA
TGTCACAAAGGAGACTAGTAGACATTTTCCTCCAAGTAAATAAGAGATTTTATTAGCAGT
ACATATAAAGTAAGAGGCCAACACTCTAAAGAAGAAAACAAAAATAATAGGAATCAGATA
TACCTTCTTTCTGTCCAGCTGGAGGTATCTAGCGACAGAACCATATGCAAAATTATCCAT
GCTCACAAAATTTGAACCAGCAAAATCCAGGACAGATCCATCCTCCTGACAGATTCCAAC
ATGGCCTATGTAAGGAGCAAGCCATGAAACTACAGGAAGAGGAGTCCAGACAATGCAACA
AGGGAATCGCCCTCTCTTTGGGTCTATCTCACCAACTGGCCACAACTCCTGCAGTTCATC
GTTTGATCTGGAATCTTCAACATCGAAAGCAGCTTCAGCCTCCATCGAGGAAAATACTTC
AGTGCTTGTTGAACATATAAAAAATCAAATGAGCTTGCATCTCATGACTCTGGAGACCTT
TGCTGAAAAGAAAGAAGAACAAATACAATTAGGCGCACCGCACCATGCTTTGGGAGAAAA
AGGGTGACGAATTATAATCAGCGCTAGTTTAGTGCTCCACTCATTTCCCAATAACTGTCA
CCAGCCTTGGGTTTCTGTTTCAAATAACTGTCCATTGAGAAAACATTTATGTTGTTAATG
CAATGATTCCGCTCTCTTTAATTTTGGAAGAAGTTAACTGGTAGTAGGCTTGTAGTATGT
CATTTCTTATTAACCTTTTATTATACTAAGTTCTTATTGGTCAATGCGGATGGGGGACTG
AGGACAGTTTAAATGGATTAGTACTTCAACAGCAATGCAAATCCATACGAAACGCTCAGG
GCACAAAAATGTTGGATATGGACATAAAGATATGAACGAGAGGATAGCAACTATAATTTC
TCTAAATTTCAGTTACCTTGTTGTCCACTTTTACAAATTCTCCTCAATCAAACTGTTGCA
CAGTTATTAGGAAGTTCAGTATTCTCACGGCCTACCATTTTCGAGCCCAAAACAGATGGC
CTATCCCTTTTCATATCAAATGCATCGCAGAACAAGTGATAATTTTGCTATACCAGCAAC
ACCTCATTAACCGCAATGAGCTTAAATGTTTGCACTTCAGACTGGCAAAGATACAGCTCC
CACAACAAAAAAGTATTTATCTAGAACATTTTAGGTCTCAAACATGTTATGAACCGATGT
CTTTAACAGAGAAGAGACGATGGGCAACATAAGATCAGATTGGCAAGTAAAGGAACACCA
ATGACCATATAAAGGAATGCTTGAAAGTTGAAACAATATTACGTTGGCGTGTCCAGGAGC
CACGCCTCCTCCCCCAAAGTCCCAAAGCAATCCGCTGCTTCAGCCAGCCGTTTGACGAAA
TGCACAAACAAAACGCAGGAGCAGACAGTGGCTCGAGCGGGGATAAATTGGTCTCAATCC
AGAACCTTACTAAAAAAAAAAGAATTGCGCCCAGCTGCACCAACTAGTAAATCGATCTCT
ACAAACTGCATCCGATGCACTCAATGCCCGACGAATGCGAGCTCCTAAACTGGCCCTAAA
ATACAAGCACCGTACGGACCAGTGGAACTGACCGAAGGGGAGGAGAGCACGGAGATTGAG
AGGAAAGCTCACCGGAGAATGGGCAGGAGACGGCAGGCTCCTCCGCGATCTGGTGCCCGT
AGATTGGCCCCCGGCGTCGCCTCTTGCCGTACGGGTGAAGGTTTACTTTGGCTTCGCTTG
GGAGCAAAGCCAGGGGTAGCAGGCAGGGGGAGGCGTGGTTGCAGAGGAAAGTGCAGAGGG
AGGGACGGGACGCCGGGACGGTGCATGCACCTGGATGGGCGCAAATGGTAGGCGCACGAA
CCGCGCACGCCACCCCGCTTTGCTTCCTTCCAACAAGGTTCTTTAAGACAATACAAACGT
ATACACGTAAACACTCATCCTGTGAATGCAAACACGCACATCTATGAGCATCTTCGTAAG
TCTGAGCCAGCACGTCATCTTGAGATTTACGAATTCATCGTAGGCGTCTCGTCGTCGACG
GAAACGCCTTCTTCCACTAAAAGCGTATTGTCAAAAATCCAGAAATAAATCCAGAAATAA
TGCAAGCACCAGGGCTGAATTCTGATGGGTTGGGAATACCACTGTCCCTCTAACCATCCA
ACCATTGGTTGGTTTTGCTTCCACCAAGGTTTTATGAATGATTGGTTATTGATCGTTCAC
GATATTTAAAGTAGGCGCCCCAAACCTTCCTCAAACATCCGGACGGGTTGCCTGGTCACT
TACCGGTCATGAAATTTCGATTCACACAGACGTCTCAAACAGTTCTTAAACGTTTGGGCT
GACCGGCATTCCTCATATCCAACCCAAATATGATGCGGATATGGGGCGTGTGGGCACGAC
CGCTATGTCGATCTGCCCGCGCTGGCCTGCAATGACTTCACATATATTCGTTCTCATCCG
CTCGTCTTAGCAAACCCTAGCCACTTCACACTCTACTTCCCTCACTCCCTTCGCCATCCT
AGCTCACCTCCGGCGATTTCCAGCCGTCTTTAGTATGGCTAGCAGCGGATCTGACTCCGA
TCAATTCGGATATGTCGATTGTGGTGTCTTCCCGTGCAGTGGAGGAGGCAATGGCGGTCC
GCATTGCACCCCGTCGCTCCCGGAAGGACGGCGCCCGACCGACGAAAGGATTTGTCCAGC
GCGACTCCATAGAGTCGGCGCAAGGGGCACTCAGGTCCTCTCGGGCTGGATCATTGCGGT
CTCGGCGGTCGGAAAATTTCTCCTTCCCCGTCATCGGTTGGGCAGACAATGAGTCCCATC
GGGAACGGGCGGCCCGTCATGGGAAGGCGAGGATAAGGGTTGTCGAGGCGCGTGTCGCGG
TAGGAATGGTGGCGGGGAAGGCGGCTGATGCGGTGACGTGGGCCGCCGTAGAGGAGGAAG
CCATTTGTGCCCGCATTTTGAAGAAACGGCAGCAGACGAAAACGTGCGCCCTCGTCCGAG
AACAGAACCTGGCGGTCCGTGAAATGGTCGGGCTGCCACCGAAGGAGTAAAAGGAGGTCA
GTGGCGACAAGGATACCTCCCGCAACAAGTAGATCCGGCTAAATCCCTACTGTATCTTCG
ACCAGTACTTCCACGTGAAGTACGGCAAGGGCAACCATGGATGATCTCCATCATAGCCAA
ACGTGCCAAATTTTGCTAGTCCGACGGCATGTTAGTAGTGATGGAGTAGCTGGCTGGCGT
GTGTGATGAATCAACGTAGTTGCATGAGTTTGTATGGATTTGAGATATGATGTTTGAGGT
GTACAGTTGTGAGAAGGAAAATTTGAGGTTTGACTAGTCAATGTCTGCAGACGCGCTTGT
GCGTTTGAGGGGTTGGAATTTGCTAGTCCGACTGTAGATGTTGTAACTATCTCCAACCCT
CAAATTGTCCGTATATGTTTGGACCGCACAATTTGAACCATGAAAGTCGTCGAGGCGGGT
TTGTATCGGGTCCGCCGAACGGCTCGGACGTGTTTTCTCCCGCAAACCGTAGACACGCGT
GGGGTGCTTTGCAGGCTTCTAGACCGTTACCAAGCCCGTGTCGGACCGCCCCATCAAATT
CCCACCACCCGCCTCTCACGTGCTTTCTATCGAACGTCGGTGCCACTTGGCATGCTGCAT
TCATGTGGCACCCCGGTTCAGAGGAACGGGAACATCCCGTATTCCAGCCCAAAGATCAAG
TCTTCTGGAAAACGACATTGCTTTCATAAAACAAATCAACTCTTTATTACAATTAATCTA
GGTACAAGGGTTCGGGTGTTACAAAAGATTACAAAGGCACGTCGACACTACGCCTGCTAA
GGTAGCTCTATGCTGGCAGCGGAACCACTCATAACAACGGAATAACTTCTAGTAGTGGAA
CAACGACGACAATGATGGACTCCACTTTGCAGGGACTCTGGCTAGGACACGTCCTAGAGC
ACAAACTCGGAATCCTCGACAAGCAATCAATCATGGTATCACCTGCAATCTCGCATGACA
CGCCAAGTGGGTACTTTGAATGTGCTCGCAAGCTCACATCAACCAAAGCAATCAAGACAA
ACAACATCATGGCATTACAAGCTAATTGATAATGATCATGATACTACTAGAACAACATGA
GATGAGCATGGCATGAACATGTTACTCATGATATGAACATGATGATACTAGGATGAGAAG
GGGGTTTCGATGTTTAAGGTCCCATTGATCAACTTACTCTGCTCGGAGGTTATTTTGTAA
CCACCATATGTATCAAGCTTACCGTCGTGAACATCACACGATCACCTGAGGATCAACCAA
TCTCGGTATCAATAATACCATCATGATCGTCACGTGACCACAAGGAGCTTGATCTTTACC
TATTATCACCGCATGACCACATAAAGATCAACCAACTTCTTTCCTCATGGAACCAGGGTT
GTTTATATCTAGTTTATTATTACTTTTGACCCATAGTGTGACCTATTAAGAACTGTGTCC
GTGACCGAGGACGAGGTTATCGATAGGCTATACACTCTGTAGAGGTTAGTACACTGTACC
CACACCACGGAACTCATGGCCTTGTGCTCCCATTCGGGTGGACCAACGACATTCCGACCA
AACCGAATTATTGCATGACACTCTCCTAGCCACTCCAACAAACACCCCTTTGGGTTGTGT
CATGGGTGGCACCAATGTTAACTCGTGACATCCGCCACCTTTTGGATGGCCACCATCATG
GCAAAACATAAACGGTTCCAAACGGGGATATGAGCTCAATACCAAACCCGGGCACACAGG
CTTATGGCTGCCTACCTGATCAAGGTAGCACGCGCACATAACTTTCCCTAGTTGGAGGCA
CCGAGAGGCATGACAATAGACCGAATTAGGGCCTCCCATTGAGCCATGTGTGGTTGCATT
GGTGAGCTCGATTCAGTGGAACCATGCTTGAGCCAACACATTTTTTCAAGTTCGATTAAT
TTCAAGTTTAACTTGAATATGGTGATGAGCTGAGGAGTCATCATAATAACATGATGAAAT
AACAATGCATATGAGCATGATATCAACATGAACATGGATGGGCAACATAACCTTTTAGCA
TATGAATCATAACATCAACAACAATACATAATTTATTATATGAGATGCAAATGAGCATGG
CATGGTGATGATCATTCATATGACAAGTATTTTCATAATAGACAATAAAAATCCATATGA
GCATATATCATTAGCATTAGCATAAAAAATAATTACAAGAATGAAACATGATAATTAGAC
CCCTGATATAATCCATAGAATCACTAAAACAAGCACATTATGCAAAAAAAAGAATATATC
TAAAACAAAACAGTTCGTAATGATCTGCACTAAAACCATACTTCTGTAACTCCAAAACTT
ATTAAAAATTAGAAAAACGTGGGAAATTTGTATGTCAATACTATGTAAAAAAATTCAGCA
ATTTATCATCTACGAGTAAAATTAGATCATTAAAACATTGGGCGTAAAAGTTTCTGTTTC
TCCATGGTTTCAATTCAACTATCATCCAAATCATCCCAAAGGGTTTACTTGGCACAAAAC
TCAAAATAAAATATACACACATAATTACTATAGTAGTAATAACTATGTTGACTGAAGAAA
AATATAAATATAGATCAAAGGATAGCTATTATGTTGTCTCCCAACAAGCGCTATTGTTTA
ATGCCCTTTAGCTAGGCATAATGCTAGGTTCACATTTTGTCATCATTCAAACTAATACCA
TAGGTGGCTCTCGTAATAGATTCATAAGGAGGGTTAATTCTTTTTCTTGGGAAGTGTTAC
ATCGTTTTCTATTGTGTGAATTGGAATCTTATGTTACCTTCTTTCATATCAATAACTACA
CCTATGGTTCGTAGGAAAGGTCTACCAAGTATTATAGGACGAGACATATTACATTCAATA
TAAAGTACAATGAAATCCACGGGCACATAATTTCTATTCGCAAGTATGTGTACATCATTA
ATCCAACCCAATGGTTTCTTAATTGTTGAATCCGCTAATTTCAAGTTGAGGGAACATCCA
TCCATATCGGTGAGGCCTAGAACATCACATAAAGATTTGAGTATAGTGGATACACTAGCT
CCTAGATCACACAATACTCTACATTCATAATATTTAACCTTATTTTAATAGCAGGTTCCC
ACTCATCATGCAAATTTCTTGGTATAGACACTCCTAGTTCAAGCTTTTTTCATGAGCTTT
AATAAGAGCTTCTACGATATGTCTAGTAAAAGCCGAGTTTTGTTCATATGCACTATGTGA
ATTGATTATGGATTGTAATAAGGAAATACATTCAATTAAATAGGAGATATCAAAATTAGC
ATCCTTATAATCCAAAGTAGTGGGTACATGCTATCTAAAGTTTTGACCTTTTCAAACCCA
TTTTTGTCATTTTTAACATCAAGATCATCACCCTCCAAACAATTGGGATGCCTTCTAATT
ATAATTTACTCATCTCCTGTCTATTTATCATCAAGTTTTATGTTGCTAGATAAATAATCA
ACAGGTAAAACACCAACAATTTTAATATCTTTACCATTTTTATCATGACAACCGGATACA
AACATCTTTTCTAGGATTTCTTGTTTAGCTCTCATCTTTTCCATTCTTTTCTTACTCTCA
TCTATGGTGACTTGGATAGCTTCAAGATATTTATATATATCCCTTTTAGCTGGCAAGAAT
TTAATTTTCACAATGTCCACATCATGCACAAGCATATCCGTGTTTCTAGACAAATCCTCT
ACTTTACTGAAATTTCCTCTACCGTCGTGTTGAAAGTCTTTTGAGAATTGATAAATTCTT
CAATACGGTTATCTAAATAATTAGGTATATTAATATTATTATTATTACTATATGAATTTC
CATAATATTTTCCATAGTTGTTAGCGGGGTTACCAGGATACGGTCTAGGATTGTTGAAAT
TCCCTCTATAAGTATTGTTGTTGAAATTATTTCTAGCAATGAAATTCACATTAATGGCAT
CATTATTTTTATCAATCAAACTGGATAGTGGAATATCATTTGGATCAATTTGATCATTCG
TACTAGCAAGCATATTTATAATAGCATCCATTCTATCACTCAAACTAGAGACTTCTTCGA
TAAAATTTGCCTTCTTACTAGTTGGAGCTCACTCGATGTGCCACTAGGAATAGTTTGCGG
TCATGTTGTCTAGAAGCTTAATGGCTTCCCCTAATGTGATTCCCATAAATGTGCCACTTG
CAACTGGATCTATAAGGTTTCTCGAGACAAAGTTTAATCCAACATAAAAGTTTTTTATTA
TCATCCATAAGTGTATATTAAGGCCCTCTCCTCCAAAGCCTTGAAACTAAACAAGTTTTG
ATGGCTAGGGAGGGAGATCAGGCAAAAATAAGCTTAGAGGATACAAGTGGGCTTAGGGGG
ATAAGAAGTGAGTCTTCTAGGGGGAAAAGACCGGGGGGGGGGGGGGGGGGAAATCCACCT
GGTGAAAATCCAGAACTCAATGTCAGCCGTTAACACACGTGGGGGGGTGAGTACGGC