Contig Data
morexGenes
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Map Locations of contig_45972 (5552 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_45972

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61899 1 323 bp MLOC_61899.1 Available Available None
MLOC_61898 2 1245 bp None Available Available LOC_Os06g45540.1, FRAME:+1, EVALUE:3e-121, 13106.m04802 protein zinc-binding protein, putative, expressed





CDS Structure of MLOC_61899






CDS Structure of MLOC_61898






Contig Sequence (5552 bp)

>contig_45972 5552 assembly3_WGSMorex_rbca.fasta
CCCCCAACCCAAAAAAAAGGGCCCAACCGGGCCATGAATTTTGCGTTGACACGGAGAGTG
GATGACGGAGAGAGACCCCCGTGCATGCTCAAAAATACAAGAAACGCATCCTACCAAAGA
GAAGAAAAATACCCAACCAACACTTGTTCTAGCATGGTACCGTGACACCCAAAGCCCCAA
CTAGTTGTAGGAGGCATCGTCGCCATCATCATCATCATCATCCGTTCTTCATCCCTTTCA
CACTATAAATAGCTCTCCCCAATGGATTCGTTGCACATTCCCTCTCCCCTCCCCCTTCCC
CCTCTCTCTCTCCACCTCCGCAGCTACAACAAGACAAGCCACATCTACATGTACTCCCTC
ACGCGCCACCACCACTACTAAACCAGAGAGAGAGGGAGGGAGGGGGCAGACAGGAAGACA
GAATTGGCCTGCCAAGAAAACAAAAGAGAGATCAAACCAAGAAGAGAATTGGCAAGAAAC
AGAGAGAGAGAGAGAGTCGTCAAGAGGCAGCGAGAGAGAGAGAGAGAGCAGGGGATCTAG
AGGGAGATGGGGATGCGGGTGCCTGGTTGGGTTGGGGGCCTGGTGGAGGAGAGCTTCTTC
GTGGGGTGCGAGGCGCACGAGAGCCGCAGGAAGAACGAGAAGAACATCTTCTGCCTCGCC
TGCTGCACCAGCATCTGCCCGCACTGCGCCTCCGCCCACCGCCACCACCCCCTCCTCCAG
GTCCGACCCGCCCGATTACTCCTGCTACTATTTCTCTTTCTCCGTCCCTCCGCCGCCTTG
ATCTTACTCACTCAACTCACCATTAATCTTCCTACTCCGAGCCGTCTCGTTTTCTTGGTT
GATTTATTGCTGCATGCATGCTTTTTCGGTACAATTGTTCTGATTAAATTCCCTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCCGATTGGCATGTTTCTTGCGAAGTTTCTGCTGTCG
ATCTGCTTCCTGAAGAGATCAAAGGATCAGTACTGTACGCCACAGTTAGTCTATCTTGTT
TGGGCTCAATTAGTAGCCGGACGAATTCGATTAAACTAATGGATCAGTTAGCACAAGGTA
GCTGTAGGCTAGATAGATAGGCCAAGAGGGAGGGGGTGTATGCATCTATCCATCCATCCA
TCAGCCTATTCCAATTGCTTTTTTGTTTTGTTTTGTCCTGTGCTGTCTTTTCAAGTGCTG
TTCTTTTCTCACTTAGATTTGGCTTAAGCCCGGACGGACGGACGCTTGCTATTGCCCACC
TTCGACCTACTAGTAGATGTAGATGTCGAGTAGTAGTACGATTATTATTGATTGAAGCTT
AGAATTCCTCCCTCGTTTTGGAATTCTATGCTAATCTCCCGTGTACTTGCTGGGGGTCCT
TGTCCATGTCGTCTTGCGAGTTCTTGATCATATGCCACTTTTTAGGGCCTCGAATTAGGA
CGCTGATTGCAACATGTACTGGTATGTAACCATCACCTCACCTAATCTGCAAAAAGCAAC
AGCCTCATAAATCGCAACACACACCGGGATTCTGCCTCGAGTACTTACTAGTTCCCTTTA
AATTATACCAGCAGCTGGATGGATTCTTTGGGAGTAATTGCTTAGGTAAATCGAGAGGGT
AAAAATCACTAGTAGAAAGTACAAGTGCTCTTTCTAATTTTAAAACAAAAGGAGGGTAGA
GATTCTGTTGCATGCTGTTCGCTTTGCTCCTCCTCTTCTTGATCTCTTTTTTGCTTCAAG
AGGAATTTTGTTGTCTTCTTCCTGCCGGTTCCCAACCCCTTTCTTTTCATTGCCAACTAA
TTTAATTTGGCCCGTTTCTGCTGGCATGGGTAGAAGAAGTCTGATGTGGTGGAGCCAGGG
TCAAAATTTTGGGTGGATTTTCACCGCCGCTTGGCCTTTCGCTGGAAATGGGTATAGTCC
TAGTAGTAGTAGTACAATACATGGTGAATTTCACCGCTGCGTCCATGCTTCTGCACTGCT
ACTTTTCCCCCCATCTGTTTGCTGGAAAGGTGCCTTTTCCAAACTTGTGATTGTGCTCCC
CATTTCCACCTTACCAAAATAATTTACTGCGACGTCACAGACAGTCTCGTTTCCACCCAC
CATCGCCGTGCTCGATTTGACGCGAAAGTGATGTTGATGGTAGTACTACAGTAGTAGTAG
TAAATTGCTCTTTTTTCTCAAAGATGTTTCTACCTTTCCGATGAAGGAGCCGATCATTAG
CATGTATCTTCCGTGTAGAATGATTGGATTACCTCATGCTTCTAAGCAATTTGCCATTTA
AAGGCCGGTTTATCCAAACTGTTTTGCCATGTATGGAAGCAAGCGTATCCCTGCCCTGCC
CTGCCATTGTAGTAGTGGTGCTCTTCCACATCTGCAAGCAAGGCAGGTGGGTGTGCATGG
TAAGAAATGGGGCATCTTAAGGACACATTGTTACCGCCGTGACGCCATCATGGCGAAGCA
GTACCCATGGTAAATGGGTATACTCCTTGTGTGTGTTTTTACTACCAAAGAAGGCCACAA
TGCTGTTCCTCCCTGCGGCGGGGGCCCCTTCCTTGATACTGTTCATTCATGGCACAGTGA
AGTGCTAGCCACCAAAAAGGCTTTGCCTTCCTCCTCCCCGAGTTGCTGCTCATCTTTTAC
TACAGTTCACCACCAACCAACCCCCTATGGCTGGGTTGGGGTTGGGGTTTTTACCATCGT
ACCCTCTGGTGTTGTGCCCGGTAGGGGCAGTTGGTCATTGCGCGCTGCGAGGTTGGGTAT
GCATGGTCAAAGCGTGGTCGTCCTCCCTTCCTCCATTGATGTGTTGCCCAATGGAGGAGC
ATCGGCATCAGTACCGACCTTATTACTACTAGTACTACTAGCTTCTGAAATTCGGTGGTG
TTTCTTTCTAAGGGACTAGATTTTTTTTAGTCCCACGGACTAAAGAAAAAAAATCCCTCC
GATAAAGTTTTTTTCTAGTCCCTTAGGCCTCGTTTGGTTAAGGACGATTGGGAAGGTTTT
GAAAAGAAAATTCCGGGAGGGCCCAGAAACCCCACAGATCTTCGGGCGTCCATTTGATAG
GAGGGGTTTGGTTAGCCCAATTTCCTCCGTTCCCCTTCAATCCCTTTCTATCTATGTGTT
TCAAAACCCTCCTTGGAGGACTAGTGGAAGAAAAACCCCGGGTATTTAAGAGGATTGGGT
GAAACAAAGGATTCACCCAATCCACTGAAATCCCTCTCTTTCAAAACCTCCCCAATCCCC
CTTAACCAAACGAGACCTTAAGGAAAAGTCTTTTCTTTATTTAGGGACTAAAAGGGACTT
TTTAGTCTAGTCCCTAGGTAAACAAACACCACCTTATTATCTCCTGTACGTACTACCCCT
AGCACGAAAGCATGAGACCGTTCTTAGGGCCGTAGCACGAATCTTAAAGCATGAGGCTGT
TCTTTTTTTTTCTTTTGACACGAATGAGGCTGTTCTTTCTGACCCGGTGTTTTTTTCTCG
TTTTTGTTGCATGTATGTAAAATCAGGTGCGGCGATACGTGTACAATGACGTCGTCCGCC
TTGGTGACCTCGAGAAGCTCATCGACTGCTCCTATGTCCAGGTGATTAATCACATAGTAT
TCTACTAGTACTTCATCAGTGTACTACTCCTAGTTTAGAAGATACGGTTAAATTCAGTGT
TTTGATACTAATCAAGTGGATGTGGATGTATGTATGCGTGGGTCAGCCCTACACGATCAA
CAGCGCCAAGGTGATCTTCCTGAAGCCGAGGCCTCAGTCCAGGCCATTCAAGGGCTCCGG
CAACGTCTGCCTCACATGTGACAGGATCCTCCAGGAGCCCTTCCACTTCTGCTGCCTCTC
CTGCAAGGTCATTAATCAACTACTCCTACTCCTACTTAATTCCGACCACTAATCACTTGC
TAATCGCTTAAACAAATCTTATGCTGAATCATGTACGTGCGTGTGTGTGCAGGTGGACCA
TGTGGTGGATCAGGGAGGGGACCTGTCCAACATCCTGCTGTATCGCGCCGGCGACGAGCT
CCCCTTCCCGCGCTTCGAGAACCTCCACGTCGGCGACGCCGACTCGGGGCAGATCACGCC
CAACTCCATCCTCGAGGACCCGCTGCACCACCACCGCAACGGGTACGGCGGCGGTGGCGG
CGGCGGCGGCGGGTCCAGCGACAATGCCGGCAATGGCGAGCCGGCGGTGGTGAAGAGGAA
GAAAGGAGGCGGCTTCTTCCCCAAGATGGTGCTGTCACTGGGCAACAGGAGGAAGGGTGC
ACCCCACCGATCCCCGCTAGCCTGACAAGTCCCTCGTTTGCACGCCCCACCCCACCCCCC
CTATATATGTGTCATCATGCTGTTAATTAGTCCCGGTCGTAGCTGGAGCGTTATATTAGT
AGTGGCGTGTGTGTGTGCTACAGTCCTATGGTTAGCCGTGTAGTGTGTGTGTGTGGTTGG
TTTGGGAGGGGCCTGGCCTGATGTTGATTCTCATTCAACCAGGGCCAGGGCCACTTCCGG
TAGCCGTACGTACGTACGTAGGTAGGCCAAAGTGTTTTGGTGAGAAAAGAGAAGAGAGTA
GAGAAAAGAGAGAAGAACGGGGAAAGCGGTTCCCCCTGTTACATGGCCTAGGTAGGCACG
GGTCCTTGAGCGGGGCCCACGATGCATGCACGAGGGCAGGCATGCAGGCTCCCCACGAGG
GTGGCTACCAATTTTGTATTATGATGTAACAGGGGCGTCCACCCCCCTCCCCTGACCCAT
ATATACACCCCCCATATATATGTGTGACATGTTTGTTTTTGTATCTACTACATCCATCAT
TCTGCTGTGTTCCCCCCTCCACACTTCTGGTACTACTGGTGTGTCTCGAGCTCGAGCTGC
TGCCTTGTTTAAATTACGAACAAATGGGTTTTTGAAGTCCACTGGTTTTGGTGGCTGCCT
TGTTGAGCTTGAGAGCTGTGTGGTATGCATGCATGCATGCATGCATGCATGCATGGCTAT
CGCAGGACTGTTGGCTGCTTTAATTCGGCCGGCATGTGATACACAAACACACCCCCTCCG
GCTTCAGTCCAAAGTCTTCAGTTAAGGTACTAGCGGGAAATGAGTGTCTTGCGGAATTGT
GTTTGGTTTGTTTGTTTTTACTGTCGTTGTGCTTGTCAGTTTAAAGAGAGAGAGAGAGAG
AGCGAGGGATGCCCCGTCTAGTCCCATGTCGCCTAGGCAAGGTACGTACAGCTTCCTCCT
ATCGGCCTTGCCTCGTCATTGATAGATCCTCTCCATCGCACGGATCGGGGATTCGCGGTA
GTTAGAGGAGAATGAGTGTACCTTCTCCTAGGCTCGAGGATCCCGAGCCACGTTATGGAT
GAAGAGTGACAGCGATGAGCACCTAGGCTCGTGGCGCCATGGATGAAGAGTAACGGGGAT
GAGCATGTGTGTGCGTGAGTAGTGGCAGTGTTGTTGCTTCCCGTCCGCACGCGCAGGGCC
GGGCCGGCAAAATATGAGGCCCTGTGCGAAACTAAAAAAAAGGAGGCCCTATCTTACTTA
AAAAATGAACAATCAAGAAAATATAATGTATG