morexGenes - Barley RNA-seq Database

Contig contig_45866
Source Contig contig_45866
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45866 (6878 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_45866

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61790	2	1563 bp	MLOC_61790.1	Available	Available	LOC_Os02g33080.1, FRAME:+1, EVALUE:0.0, 13102.m03581 protein N-carbamoylputrescine amidase, putative, expressed
CDS Structure of MLOC_61790

Contig Sequence (6878 bp)

>contig_45866 6878 assembly3_WGSMorex_rbca.fasta
GGAACCACCATGGCGTCGACGGTTCCTAGAGCCGTTGGAAATAGAGCCGTTGTAAATATA
GACTATCAAATTTAGACAATCCGCTGGAAAACAGAGGTTGTCTAAATTCAATTTTTTTAG
ACCATTGTCTATATGAAGATATAGAGTACCAAATTTACAGAAGCCACTAGAGATGCTCTT
AGAGTGTAGATTCACTCATTTTTACTCCGTATGTATGTACTCCCTCCGTTTAAAAATAAG
TGTATCAACTTTGCACTAACTTTATTACAAATTTAAGTTATTTCTAAGCCACGTAACTTA
TTTTGAAACGGAGGGAGTAGTTGGTAGCAGAAAACTATAAAAAGAAACTTATATGTAGAA
AAAAGGAGTATATATATATATGTTAGTTTGCAGAAATTTAGTTTATAAGAACTTATATTT
CTGAGCCATTGGTAGTTTATAAGTAGCGCCCTTTTGGGCTTTGGGTGTAGTAGCATGGTA
GAATGGTGCCCTCTCTCATGGCGCGAGGGCAATTTGATGTTTTCCGTCGAAGAAGACGCC
CTTCACCGGTAAAGATCGCCGGCAACTTTGTCCCGATGAGCAGCAGCGCGCCGGCGTTGA
ACCATGGCCCGGACTGAAACTGGTCCAAGGAAAAGCAGCTCGCAAGTTGCCGTATAAAGC
CAAGGAAGGCGGTCTTCCCCAAAGGGCGCCTTCCTTTCCCCTCCTCCCCATCCGCACACC
GCCGCCGCCGGGCCACCTTGCTTCCCCCACCTCCTTGCGCCGCCGGGGTCCGGCCCTGCT
CGCCTTCCCCGCCGTCGCAGTCGCACCGTCCTCCACCGGTAACCTCGACCCCCTCTCCCC
TTCCATCGATCTGGATCCCTCCACGCCATGTGGGCCCCGCGTCGGCTACCTTTCCTTTTC
AGCGCTTAAAACCTTCTACTGACATCTCTTGGCAGTCGGAGGGAGAAAGCAGCAGCGGCC
AGAGCGGAACAGCGCGGGCCGAGGAAGGGGATGGCCGGCGCCGGGAGGAGAGTGGCGGTC
GCCGCCGTGCAGTTCGCCTGCACCGACACGGTGGCCGACAACGTCGCCGCCGCCGAGAGG
TACGGCGGATTCCTTGCGTCGACCTGGATTTTAGTTACCATCCGCTAGCCGTGTTCGGTG
GTTTTAGGACGCTGCGCTTGCGTTGATTTCATTTCCATGTGCTCTTAGTTCTCAGCTAGG
CATTGAAGCTACATAATCTCTTGGATCTCAATTGCTTTGTAATTGCACGCTGGATCTGAA
TTGCTTCTTAAGGGAATAATTGCGACCTCCTGACCACAACTTACTTTTTACTCGACCTAA
TGACCTTTATACCATTTGGTGTTTCTCTTATCGCACAAGTTGTTGCCACACTATACCTTC
CACTTTCTTGATCTGACTTGACCATGATTTTTTTTTTTTGACAATCAACGGCGATCAGTT
GCTCCTGCTGTATTAATAGCCTGTTATGATTGCAAATACGCGGTGCTATATATGTTCTCG
ATTTGTACCATCTTGTGAGCATAAGCTTTCTATTACTTATGGCATCTTGCATATGCCATG
ATAGAGTGAGAGAGAACCATCCATTTGCATTAGGTAGTCTATTTAGTGGCTTTGTACACT
AATCACCACAGATGACATCAAGTTGGTCTGGACTTGGCTCCTCGCCCAAATCAGCAGTTA
TTGTTCTTTCGCCATTTCAAAAAATGTATTTTAAACCATTTTCATCTACGTATTTTGGAT
AACCAAACCAAACGAGTCGACTAGGAGTGAGGACTTCACTTTTCCACAATGACCTTGTCA
TTCCAAAGAGAAAAACTCAATGGTCTCCGTGTTTTATTGTTTTAACCGTGATTGCCCTAA
TGTCTAAATCAGTCTACAATTTTTATTATTGGACATAGATTCTTAAACTTTACTGTGCTA
TTTTTATCTACGTTTCAAGGTGCAACTTTGCCTTTATATTTTACTGGATTCTAAAGCTGC
TGTATAGGACTTTATTTTACTACCCCCTCCGATCCAAAGTTGTACTAAGTGTGCGTCAAT
TAATATGGATCGGAGGGAGTAGTAAATTCTGTTCAAGCTCTATATCAGTGGTCTTGATAT
CTGAATTTGGGGAATTTTGTTCTACTTGTGTTAATTATTTTGATAATTGACTTTGGGGAT
ATTTTGTTCTAGTTCCGTAGTGATGACTTCATTAAGTATTCACCTTCAGTTTCAGGTTTA
TTTCTCTTGCCACTGTTTCTCTTTGCTAGCAAGGATCTTTGCATGAAAAGTAACAGTGCA
GAACCAGAGTCTATGGTTCATAGTTCACCTTTTTTAAGGACTATTTGTTAGTGCTACACG
TATGGCATTTTGTGTATGATTTGCTTGTAAAGAGGTTAATCAGCATGGGATAATTGTGTT
TAGTCATTTTTCCTATATGTGTAGGGCCACTTTATGAAGCTGCTATATGCGTTTCCGTTC
ATTGTATGAAAATCATGTTGTAAAGATCGTCTGTGACAAGTATGCAAATTGCTTTTTTTT
TCATAGTTACATGCACATGCAAGATCTGTTATGTGCTTCTGACTTGTGGTACTGCTAAAA
ATTAAGAGTTTTGTTGTCTCCAACTATTATCCACAGTGACAAGAAAGGAAGCTATTTCCT
ATGGTTTTTAGTTGTTACGAGTATCTATCACTGGGAATACAGAAGAACTTAAGCCCTAAT
TCCTGATCATTTGTATTTCAGATTGATTAGAGAAGCTCATAAGAAAGGCGCGAACATTGT
CCTCATTCAGGTATACCCGTATGATAAATAAATGTGATGTTCATTGATGAGTGACAAAAT
TTACGCTTGCAATATTTCTTTCAAGACATGCATGGCAGACATATGAATTCAGATGTATAT
TCTGCCTTTAGTTTCACAGCAAAACAAGGACAATAAGACATATTTAATTGTCCACTTACA
TTTGTGAAATTCTGTAGGAGCTATTTGAGGGGCACTATTTCTGTCAAGCTCAAAGGATGG
ATTTCTTTGGGCGTGCCAAGCCTTATAAAGAGAACCCGACTATAATGAGGTACGGTAGCT
TGTTGTGCTTGAAGCATGTGGACTGCTGGCTAGTGATATTTCCATTTGCTGTCTGTAATA
TTTATACATTCACTTCATCTTTTATGGTCCATAGAATGCAAAAGCTTGCAAAGGAGTTGG
ATGTTGTAATACCTGTAAGTTTCTTTGAAGAAGCTGGCAACGCTCATTACAATTCTGTGG
CCATAATTGATGCTGATGGCACCGATCTTGGGCTATACCGCAAATCGCACATTCCAGATG
GACCAGGTATGCCTTTACAGTAGTGTTCTCCTAATACAATATAACTTCTAAGTGGATTAT
CTGATCTAGATAAACTCTTTCTTTTGTCAGGTTATCAAGAGAAATTTTATTTCAACCCGG
GTGACACTGGATTCAAGGTAAATATTATCTAGTATTTGTGTAAGATATCAGTTTGGTTAA
ATAAAGATGTACAGATTGTAGCTGTGGCTGTCACTGTTATTATTAGAAACTTTCATAGTA
AGACCACCTTTTGTTGATGCAGGCTTTCAAAACAAAGTATGCAACAATTGGTGTTGGTAA
GTTGTTTATATCTGCACTAATGCCAATTTTTAATTTACTCAGTCACAATAGCTCTGTTAA
TAATTAGTGTGGCAGATTAGTACCTTTGCAGCTTTGCTTATTATTGATCTAGTCATCCAT
GCCTTGGTAGGAATTTGCTGGGATCAGTGGTTTCCAGAGACTGCAAGGGCTATGGTGCTA
CAGGGGGCGGAAATATTGTTCTATCCCACTGCTATTGGTTCTGAACCCCAGGATATGAAC
CTGGATTCCCGTGAACACTGGAAGCGTGTCATGCAAGGCCATGCCGGCGCTAACTTGGTA
CTTTTAATTGTTTCTTTGTATTCTGTAATGGACTCGTGTCTTGTTTCATGAATCTAAAAG
ATATTTCTTCTATTTCTAAATGACTGTACCAAAACTCAACGGTTTGATGATTAACCTTTA
AATGTGCCCAACAGGTTCCCCTTGTTGCTTCTAACCGGATAGGAAAGGAAACCGTCGAGA
CTGAGCATGGCAACAGCACCATAAAGTTCTACGGGAACTCGTTCATCGCAGGTGATTCGA
GCTTCTGTGTGTACTTTACAGAGGAAGGCGCAACAATAAAAGCATGACTGGTATGATCAT
TATGCGATGACCGTGTTCGTGCAGGGCCAACTGGAGAAATCGTGAAGCTCGCAAACGACA
AGGACGAGGAGGTGCTGGTGGCAGAGTTCGACTTGGACGAGATCAAATCCACGAGACACG
GCTGGGGGATATTCAGGGACAGGCGCCCTGATCTATACAAAGTACTGCTGACGTTGGATG
GCAAGACATCATCATCATCCTAGGTTCCACTTTTTATGAAAGAGGAAATGAGCTCCACAA
TGCTGGGAGAACACCAAACGGACAAACGGTAGATCTTCATGTCTTTCCCCCTGCATAAAT
AGCGATCTGCCAGTACGTTTCCAACTTGGTTGGTGATTTCCCACCAATATATAACATCAA
TAAAAATACCGTCATGTGATGTTGATGTGACCGGCAGCAACATATTTGAACTAAAGCAAT
ATAATGATGATGCATCGCTGCTTCACAGTTGTTCAAACATTTTATTTCTTTTGCGAAAGT
TGTTCAAACAATTTTTTTACTGTTTTTTTACCGGCAGGATTAGCATCTTTGACCCCGAGA
TACCATTTGCTTTGGCTGTAATGTAGACCTATGAACCAACCAACTGTCACATGCTGTGTG
CTCTTTTTTCACCAGACCAAGTCCAGGCAGGGTTCTCGTGAGCCTAGAGTGCTTTGCAGC
CTGTGCACGCACGAGCATCTTCAGCCGTTAGGCGCCCCATGGACTGAAATAGCGCTGTCT
GGGGGCCAACCGGCGAAAAAACGGCTTGGGGGGTTCGAGTAACCGGCCACGCCCCCACCC
AGCCGGCCCCACGAGGAGAAAGACAGAGAGAGGACAGATTCCCTTTTTACATGCACATGA
GGCGTGGCAGAAAGAGAGAGAGGCTGATCCGTGGGATTTGTATAGCGACGGCCGTCCCCA
AGCGCGCTATGGGGGGCTGGTTTTGGTCTGAGATCGTCGGGGCTAGTTTTGATCAAATCC
GACGCAAAGTGATGTCCTGAAGGCGCGTCTGGACGATTTTTTTTAACGCCGGCGACTAAG
AAAACGCTTGGGAGGGCGTTATGGGGTGTGATGGGAGATGCTCTTAGCTGTGGAGCATCA
GTAATGCCATGTCGAGGACGAACGCGTCTTTCTTTTGTTGGTTCTTGTAACTGAATCCTT
GACCCGCGCATCCGATTTTTCGCCAGATTGACGGTTGATGCAAAAAAAGAAAAACTGGAT
TTTTTTTTTTTGCGATATTTACATCTCTTTGGAGGAACACTCTTATGACTCTTTCTCACA
ATAATAACTCAATCAAACTTTATTAAAACCAAGAAACTAAAACCCTGTTATGTTGTTGTG
CCGGTTCTTTGCCTTTGAGTGCTGTTACAGTCTGCTCTGCTAGTTGTTGCATTAATTAAT
TCCTGATCATCATCTGATGATGATGTTGTTTTCTTCCTCCGGCTCCGGGTGTGCAAAGTG
GAGCTTGTGTTGGAAGTCCTCCCGGCAGGTGTGGAGCAGCTTCCACGAGGGTATCCTAAC
CTCCTGTAGCACCGGCCGCCCCGTGCTGCGCCCGCAGGTACTGCCACGGCTTCCCGGCGG
CGCAGATCACCAATATGGGCGGCCGGAACACCCTCTTCCTCATCGGCGGCACCAACATCT
CCTCCTCCTCCTGGTCGTCTTGCTGTTGCTGCATCTTGCAGTCTTGAACGTCGTCGGCAG
CCACGATGTCGTCGAGGTCGAGGTCGCCGGAGCTCTCGGAGCCGAGACCCGCGGTGCAAA
GCCCGGGGTCCGCCTTGGAGCCGGCGCGACCCAAATGGAGGCTGAAGAGTGGCGGCGGAG
GAGGAGGGGGGCGGCATGACGACACATGCCATGGACGATGCAGCAGTGGTCGTGGAAGAT
GGGACGATGGCGGCCTCGATCGTTGTCGCCGTCGCCGTCGAACGGACCCTTCGCCTACGT
CGGCGACGGCGGCCGGTCGTAGTCGTAGGCGCATGCCGTGAAGACTGCCCTCGTGCGTTC
TCGTCGTGTTTGGGTAAATTATAGGGTCGGGAGGGAGGGCATGGGATGGGGAGGCGGGAT
GGGACCCGTGGCCTGCCTGCCTCTGCTGCGTGGCGTGGAGGGCTATCCGCGCCCGTCCGT
CCGTCCGTCATGAGTGTTGGTCCAAACTAGAGCATCATGTAGGGCCAACCGGGGCAAATC
GGGAGATTTCTATCAGGACATCGTACGCTTTGCTTATCCGTCGTGTCTTGAGAACGAGAT
ATGCGGCTCCTATTGGGTTCATCGACACGACGGGCGGTCTTGGTGGATTTGTTTTACCTT
TCTCGAACGTCTTGTGCACGAGATTTCGATGATACTCTCGGCTATCTCGAGGTTGAGGTT
TTCCACCGAGATTCCAAGGAGACTACGGCTATTCCGTGGTTGAGGTTTTCCACACAACTT
GTGGCTAGTTTGTGATNNNNNNNNNNNNGCACCCCTGCAGGGTTAAATCGTTGGAGGTAC
AGGTAAACCGATGATTTGACGTGAGCACGATGCTTGTTTGATTTGGAGTTCTTCTTCTTC
ACTGATCTAGGATGGATTCCAGGCCAGCATCCTGGGATTAGCAAGGATGGATCTCGCGTT
GATAGAGGCGAAGTTGTCCCTGTCTTTCGATGAGATGGTGGTCATCGTTTCTAGTGGAGT
AGACTTTGACGATCCGACTACGAACGTGCGAAGACATC