morexGenes - Barley RNA-seq Database

Contig contig_45812
Source Contig contig_45812
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45812 (8510 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_45812

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61728	1	703 bp	AK353728	Not available	Available	None
MLOC_61727	1	2549 bp	MLOC_61727.1	Available	Available	LOC_Os03g02260.1, FRAME:+3, EVALUE:0.0, 13103.m00178 protein DnaK family protein, putative, expressed
CDS Structure of MLOC_61728

CDS Structure of MLOC_61727

Contig Sequence (8510 bp)

>contig_45812 8510 assembly3_WGSMorex_rbca.fasta
AAAGGTAAGAATACGTTGGCGAGAGCGACCTTCCTCATCAACCCCAGTGACACTATTTAT
CAAGTCCATGGCAACATCATGATGGGTTGAGAGTTGCAGGCTGTCCTGGCTGAAATGGAC
AAATGAAAGAGTTGTATAACTGGTCTTTATCATAGCTAATTTGAGAATATATGAATGATC
GAATGCTATAATGCTATACTCTATTGTTCTCCTTTTGGCAAAAGATAAATTGGAGGTGCA
AATTGTTAAAAAGGCAACTTGTAATCCATGAGACCATAGGCCAATATATACACGTGCTGG
TGTGACTTAATATATGGAAACTATATACATCTCTAAACCTAAGGAAAAGTAGTATCAAAA
CAATAACCATATTGATTGAAAAGATAAAATCGTACTATAGTCACTTGTTGCATCGAAGCA
GAAATCAGCCATGAGGATTCAGCAGGGCAGCAGGTAAGGCATACTAACCAGAAGCAAATC
AAGTCATACTACGGCTAGCTGCTAATTGGACTAACCAAGCATCCATAGTACATTAAATGG
GCGTTGCTACAAGCTTGCGGTGTGACTGTCACCTGTGCCCCACAAGTCCAAATATTTCCT
TAACCCCATTCTCCACCCCGCCAGCGGTGGCTGGCACTACTCCTCTTGCCTCCCAGCTTA
GGTTCTCCTCCAACCCCTCTTCTCCACTCCACTGGCCACCGACACTTCGCCGCCCCTCCT
CTCCCCCACTGCCTCCTCCTCCTTCATCTCCAGCGATGCCTCGACGCCACCTCTGGTCAT
CGACCGTTATCGCCTCCAGTGATGTCAGCACCCTGAACAAGCTCTCATCTAAGCCCGCCA
TGGCACTCATTACTTGTCAGGTGCCGCTGGTTGGCGTCAGTGTCGAGGTCAGCCACCCAC
TCCACCCCTCTTTATCCAGCACCTTCCTCCTCCCAGATGCCTCCTCCACACAGCTCAAAC
AGTACAATGTATGTCGGGCAGTACGTCACATATTTAAGCGTGCACGTCCTAGACCTATCC
ATGCCTGCTAGCACCAGCAATCTGAAGCAGCACATTTCATTCGGAACCTTATCGGAACAT
GAAACAACACATCAAGCCATCGATGATTACAGAACATGGAACTAACCAGCCCTGCAAAAT
GACATCACGGATCCAGCCTGAAACATGTAGCAAGTGAGCCGGCCAAGCAATGCCGGTCCA
CTAATGATAGCAACGAGCACCAACCCATGCTCAATTGCAAGCACCAGCCAAGCAATTCAG
CGCGGCAACGACCGGCAGCAGCGCAATTCACGCAAACTACATGAGAGATCTGAAGGGCGC
TGTGCAACTAAGCGCAACCCAGCGGAACAAGTGGTAAACTAGAGGGTGCGTCGCGGCGAG
ATCCGGACGGCTCGGTGCGGACAGGGAGGGAGGGAGCGGGCGCTGACCTGGAGCGCTCGG
GCGTGGCGGATCCGGGGCCATTCCCGTCGGCGGAGTCGGATCTCCCGGCGGCGGCCTCGG
CGGCCTCCCCGAGCAGCTCCCCCATGGTGTAGGGCCGCCAGCCGTCCGCGTTCGTCCCCG
CGTCCTTGGACGGCGCTGATCTCTCCGGGACCTCCTCCGCAGCCACCGCATCCTCCTCCT
CCTCCTCTGCTGCCTCCGGCGCGGCGGCAGGCGGCTCGGTGACGGGCGCCTCCGTGTCCC
CGGCGCCGTTGGGGAGCTCCGGGTCGGAGGGGTCGGCGGGCTTGGGCTGAGCGGACTCCT
CCATGTCCGGCATCCGGCGGGTGGAGCGCAAGGGATCTGGGTCGCTGGCGCTGGCGCTGG
CTGTGGCTCAAGGGAGTGCGCGGCGATCTCGCGGCGTCCAGTCGAAGTGTGTGTGGGGGG
GCGACCGGACCGATGACGATTCACCAAGAAGGAGAGGCTGCGTCGGTGGACCTGGACCCG
TCAGTGGCAAGAAATGTGCCCTGGACGCAAACTTGTGTGCTTTCAGTGGACAACAACTTG
AATTTAGAATTTAGTTGGACAATCAACATTTTGCCTACCAATTGAGCTCTGGACTGTGCT
CTTGCAGATCCGACAATGGGACCCTCTATGAAGCGCCCTATTTTTTTTTTAGAAACGAAA
ATACCAAAGCGTGAATGTTTCCTTTCTTCGTCAATTGTCAAACTGCTTTGAAAGCAGAAT
AAAGTTTGTTTCCAAACATACCAACGTTCCGCGGATCCCATAATTTTTTAGAGGATGGTG
ACGGTAACGTTCTGCCAGAGATCTCTATCAAGATCGATGAAGGGGGTGGCACCCCAATGC
CATGGATGGAGGAGGGGCAACACAAGCTCAAGCAATCGCCAGACTCGAACAACATGAAGG
CCCTTGAGGAAGGCGTCCTACTAGGTGGCCCCGCATCTCGGGCAGTCGATGGAGTCGGAG
ATGTTCTTTGTTGAAGCGACATATGCTAAGCATATTCCAACTTTGTTGTCACACCATTGC
ATGGGGAGGCTTGGCATCAGGAGCCCTCGTACGAGGTCGTCATCCTTGAGGGTTATAAGT
CGGGCTAGCAATGAGGATTATCCAAGCGGGTATTGGACTCCCATCACAGTCCCCATGACA
GCCTTTCCATGCCCGTCCCCGTCCCCATACCCTTCCGCGGGATTAAAAAGATTCTCATAT
CCGTCTTCGCCATTTTCTTATCCCCGTGGGTGAACCATACACGCAATCAAAAACAACCAC
CGATAGCATTTTAGTAGAAAAATAGCATTTCGGCATAATAAATAATATGTTGTGGCTAGA
GGGATCTCTTACGACTTTTTGGCCAAAGAGGTGGGATGGGTGGAAATTTGTGCGGGTAAG
GGCTGGAATTACCCGAGGTCTACTAATTTGGAAACCCACATGTAAGGTATTGACGAGTAA
GGCGGGTAACGGGCACGGGTAATTCTACCCATCCCCATCCACGTCTTGCACACTGGGTAA
GGTATTTGACCCACGAACTTCTCCGTGGGCATTACTGGTACATCTTCGTCCCATGATAGA
GTAATTACCGACGGGGACGTGGGTAGTGGTTAACCATCGCCATCTGAGCTGGAAGAAAGG
TGCTAGTTAGGTTGGCTTCCAAGGCATAAATGATGCTCTGATGGGTTCACAAGACCATGT
AATAGTTTGGAAAAAAGGGGAAAAGGCTGGTGGTGTAAGAAGGGAAATCAAGAAGGCCCG
ACGGGATTATGAGCGCGAACGAACAAACTCTCTGTATTGGGGCTTCTCACACCGAGAATG
AGAGATAGCAAGACACCTCAATGAACTACTACGTCGGGAGGAAGTGATGACCTGGCATCA
GTCGTTATGTGGACTGGGCTTTTAGAAATTTCACTAGAAGACTACATATTGATCAAAATG
GATGAATCTATACGTACGTATGTAGTCTTCTAGTAAAACCTCTTAAAAGACTTATATTTA
AGAACGAAGGAAGTACTACTTTTGAAAAAAAAAAAAACTTTCGAAGGGGGTGCGAGATAA
GGCTAACGGAAAAAGGGAGAGCCCACGAGGCGAGGCCCAGGGAGTCGCATCGCATGTATG
TTCCAGAGCCTTCCACCACCACCCAACTACTGTACAACTACAGAGAGAGGGAGGGAGAGC
GGCAAGGCAAGGTTCCACACCATTCCAGACTCTAGTGCGAGAGCAGAGCACAAAAGCTGC
TCCCAATTCCCAAACCCTCCGCACACTGAATCGCCCAAAAACCTAGACCTCTCCGCCCCC
GGCCATGCTCCTCCGCGCCGTGCGCCGCCGAGGCATCGCCTCGCCGCTCGCCACCGCCAC
CGTAAGCTCCTCCACTCCTCCTCTCCCCACTCCCCTACCGTACCGTCGCCTCTGTTTTTT
TTTCTCTCTCTCTCTCGTGCTGATGATGTGATGACGATGATGATCGTCTCCTCTCCTGGC
CCTGGGTGCGCGCATGCGCGGATGGATTTTGATGCCCCGTATATGTGCTGCTGTGGTGAT
CCTTTCATGCGCGGACGGATTTTGGGGGTCCAGGGGTTGTCTGCCTGTCCGTCCGATTAT
GCACGTGTACGGCACCCATACCATAGGAACTTGGTGCTGCTAACGAGTTTGCCATCCCGA
TCTGATGTAGCACTAACAAGGATTAGCACTGCTTACTGAATGATACATGCGTATTTCTTC
AGTTTGACAAAATGCCCCCCTTTTTGTGCGTACAACCACCTTTGGGTGGGGTAAACAGAG
TACCGAGTAGAAACGGCACAACTCTGTCTACTTGTCCATTGTTGTGGTAAATATGCACCT
ACAAGGATTGGTACTACTGCTTACTGAATGATATGCACATTTCTTCAGTTTGTGTGTGCA
TATTTCTGCCCACTAAGCCACAAAACATATGTTGTAGGGCCAGGGGTTAGTACTGTATTT
TTTTGACTAATATATGCATCTTTCTTCCGGTTGGGAAGTGTTCCCTTTTGTTATTTGTGC
ATAGAATAGATCTGCATACCAAGATACCAAAATGTTTTAGGGCTTAACATTGTCAACGAC
GTGACTATTCATCTGTTTACATTTCAGCTGACTGCCAACGTCCAATCAACATGTGCTGCT
GCAAATGTGTGCTCCAGATGGGCTACTTTTGCAAGAACTTTCAGGTAACAACCATCTTAT
TTCCATATATATGAAATTTGGTGGAGATCCTTATTACAGTGTGCATATGATGTAACTCCT
TTCTGTGCTTTTGTTCCTCAGCGCAAAGCCAACTGGAAATGAGGTTATTGGAATTGATTT
GGGAACGACCAATTCATGTGTCGCTGTTATGGAGGGAAAGGTGTGTCTCTGGCCCCAGCA
CTCTCTCTCTCTCTGCATCTACATGTTCCATTCTCTGCTTGTTTACTCCCATTTTGTCTG
ATCATCAATGAAACCTCTAAATAAATGCAGAATGCAAAGGTGATTGAGAATTCGGAAGGC
GCCAGGACTACACCGTCAGTTGTTGCCTTTTCTCAGAAAGGAGAGCTACTCGTGGGCACT
CCAGCCAAGCGTCAAGCAGTGACCAACCCACAGAACACCTTCTTTGGCACAAAGCGTATG
ATTGGGCGGCGCTTCGATGACCCACAGACACAGAAGGAGATGAACATGGTACCATATAAG
ATTGTGAAGGCTCCCAACGGAGACGCTTGGGTTGAGACCACAGATGGCAAGCAGTACTCG
CCCAGCCAGATTGGTGGGTTTGTGCTGACCAAGATGAAGGAGACAGCTGAGTCTTACCTT
GGCAAGTCTATTTGCAAGGCTGTAATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGG
CAAGCCACCAAGGATGCTGGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAA
CCAACTGCTGCTGCTCTGTCGTACGGAACAAACAACAAGGAGGGCCTGATTGCTGTATTT
GACCTTGGAGGAGGAACCTTTGATGTCTCCATTCTGGAGATCTCCAATGGAGTGTTTGAG
GTCAGTGTTTGTTGTAACTTGCCTCTTACTAGTAGCTTACTTCAGTAAGTAAATTAGGCT
GTTACACGGTGCTTCATTCCCCCATCACTGATATGTTGTTGATTATGTTCTTGATTGACA
GGTGAAAGCAACAAACGGCGACACTTTCCTGGGTGGTGAAGACTTTGACAATACTCTGCT
GGAGTTCTTGGTGAGGGAGTACAAAATCACTGAAAATATTGATCTGTCAAAGGATAGATT
GGCCCTGCAGAGACTGCGTGAAGCAGCTGAGAAGGCAAAAATTGAACTCTCCTCAACTAC
CCAGACTGAAATCAATCTTCCGTTCATCACTGCTGATAACAGTGGAGCAAAACATCTGAA
CATCACACTGACAAGATCAAAATTTGAGTCTCTGGTGAATAGTCTGATTGAGAGGACCAG
AGAGCCATGCAAGAGCTGCTTGAAGGATGCCGGCATAACCACCAAGGATGTTGATGAGGT
CCTTCTTGTCGGTGGAATGACAAGGGTTCCAAAAGTGCAGGATATAGTTTCTGAAATCTT
TGGCAAGGCCCCCAGCAAAGGAGTCAACCCAGATGAAGCTGTCGCCATGGGGGCTGCTAT
TCAGGGTGGCATTCTCCGTGGAGATGTGAAGGAGCTTCTTCTCCTTGATGTTACCCCTCT
GTCACTTGGTATTGAGACTCTTGGCGGTATCTTCACCAGACTGATTTCCAGGAACACTAC
CATCCCCACAAAGAAAAGCCAGGTTGGTAACCACCGTTCCATTCCTCCTGAACTAGTAAT
AATATAAACGGTTCCAGTTCTATGATGTTGGTTACTCCATCAGTTATGTTGTATATATAG
TGTTGCATGCTCTTTTCATTTTTCTTGGTGGCATATCATTCATGATCTTGCTCTGTTTGC
TATCATTGTTTCACTTGAGATGTTTATGTGATGGCTTCGTGTCAGGACTCACTGATAGAT
GTGGTAATCATGATTGTTGTTCACAATTGAACTCTGGACTATATTTTTTAGGAATGTTCT
CTGATATGTTTTTCTTTTCTATCAATCTCTCTAACATTAACTTGCTTGGTCTCCTTCCTA
AGAGATCGATTAGCATTAGCTATGCCTGTGCCTTCTGATGGCACTCATGGAGCTGGCCTC
CTCGTAGCATTATTGATTCATTCTTCCATAGCTGAACATTAAATTGTGCCTTTGTACCAT
AAAATTTAACATTTTGTTCATGTGATCTGTATTCAGCTTGGTTGTCATCTCTCATATTTT
TGGCGTCGTACTTAGCTATGTTGGTGTATCACTGATCTTCCTCTGTTTGCTATCGAGTAC
TCCCTCCGTCTCAAAATAANNNNNNNNNNTTTGTATAAGCTGTAGTACAAATTTGTACTA
AGCTTAAGANNNNTATTTTGAGACGGAGGGAGTATTTGATAGATGGTGCTGACTCATCTT
GTTATAGTCATGATTGATTGTTGTTCCGCAATTACTTCGGATTATTCTTTAGAGATGTCC
TCTGATAAAACTCTGTAATGTTAATTTGCTTGCTTTCACCTCTTGATGCACTTCCCTAAG
AGTAAGAGGATCGATTAACATTAGCTGGCTGTGCCTTCTGATGACATTCATGGAGCTGGC
TTTTCCCCATAGCATTACTGGCCTTTCTATGATTCTTATTTTACGTTTTGTTCATCTGAT
ATGTATTCACCAGCTTGCTTGGCATGTCCATAATATTGTTTTGGCAGCACAGCATGCTAA
GAAGCAACAATATAACGTCTGTGTTCTTAATTTCTGCAGGTGTTCTCAACCGCTGCTGAC
AACCAGACGCAGGTGGGCATCAAGGTGCTGCAAGGCGAGCGTGAGATGGCAACAGACAAC
AAGCTGCTGGGCGAGTTTGACCTGGTCGGCATTCCGCCGGCGCCAAGGGGCATGCCTCAG
GTCGAGGTGACGTTCGACATTGACGCCAACGGCATCGTGACGGTGTCGGCCAAGGACAAG
GCGACGGGCAAGGAGCAGCAGATCACCATCCGGTCCTCTGGCGGCCTCTCGGAGGCTGAG
ATCCAGAAGATGGTGCAGGAGGCGGAGGTGCACTCACAGAAGGACCAGGAGCGCAAGGCC
CTGATCGACGTGCGGAACACCGCGGATACCACCATCTACAACGTGGAGAAGAGCCTGGGC
GAGTACCAGGACAAGGTCCCAGCGGAGGTGGTCTCCGAGGTCGAGGCGGCTGTCGCTGAG
CTCCGTGCTGAGATGGCCTCGGACGACGTGGAGAGGATCAAGGCCAAGATCGACGCGGTC
AACCGGGCCGTGTCGAAGATCGGGCAGCACATGTCTGGCGGCGGGGGTGGGGCTGCTGGC
GGCTCGCAGGGTGGTGATGATGCCCCGCAGGAGGCGGAGTACGAGGAGGTGAAGAAGTGA
GGTGTGTGACAGTCTTGTGATCTTACTCCCTGTTACTCATCTCATGAGAGGTGAACAAGT
TAGAGAGAGAGAGAGTGTCAGATAGATGAATAGCTAGTTTTTGGGGTGCTCTGCTGAAGC
ATGAAGGTGGTAGGACTAATTACGTGCGTGCGCTGTAATATAACTTGTCTGTGTTTTGTC
TCGGTGAGACATGGCCACGAGAGAGATGACTGGTACTCGTGGTGGAGGGTAAAATCTTCA
TCTTGTAGACCTGAGCTGGTTGTGGTTGGTCCATATGCTTGTTGAATGTGAAGTTGCAGC
TGCGTTGATTGGTTGAGTTAAAAGAATTCCTTAACTGTGCTGCTGATTGACTAAAATTTC
CAAGTTTCTCTCAACTACAGCCAAGGATTTTTTACAAGGTGTTTCCTTTGTTTTTTACAA
GTGCTGTGCTGCAGCTCCTGAAGAAAGCTTTCGGTGGTCAAACCTGTTTCTGACCCACAT
CATCACCCTCACCCCATGGCACCTTCGCCTTCCCCTTCCACCCCGTTCCACATCCTTCCT
GCCATCGGAGGTGGCCGGCGAAGCCGCGTCGATTCCTAGGAAGTTGGTGGCGGGGCGACT
CAGCTGGATATATCGGTCCTTTGCCCATCGGGAGCAGTGGTAAAGAAATC