morexGenes - Barley RNA-seq Database

Contig contig_45808

Source Contig contig_45808

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_45808 (4451 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_45808

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61725	1	880 bp	MLOC_61725.1	Available	Available	None
MLOC_61726	3	1973 bp	MLOC_61726.2	Available	Available	LOC_Os02g37000.1, FRAME:-3, EVALUE:8e-128, 13102.m04050 protein mitochondrial prohibitin complex protein 1, putative, expressed

CDS Structure of MLOC_61725

CDS Structure of MLOC_61726

Contig Sequence (4451 bp)

>contig_45808 4451 assembly3_WGSMorex_rbca.fasta
TGACATATTTTTTGTGATATATAACTTGTATTACGATGGCCTATTTGTCAACCTAGGGAT
ACGTGCAAGCCTTATAAACCGGAAAGGAGGTAGTACTATATTAGCGCATTAGACTAGGGG
TGGTGAGCATCAGCCTACAACAGTAATATCACACTATCAGTGCATATGAAGAACTCCAAC
AAGAATTAACAGTCATGAAATGGGCATAAGCAATAAAATCCATCCTACCAGCTTAACTCC
CAAGAACATACCAGGCCTGTTTCAACCGCTCTAAACACTTCAACCGTTTTTTATAACTCG
CATCAGCATGCATATAGGAAGGGGGCAGATGGTTTACAACATCAATTTAGAAACACGAAA
GTAACTACTCATCATTTTGAAACAGTTCAAGTTAAAAAATTGGAAATCAGTCTCTTCATG
TTTCATTTGTACTTGCTTGGTTGCTCAGTTTGCAATCAACAAGAAAATAAACTAGACCAC
TGGATGCCAGTTTCCTTGGTCCAGAATACTCTTCTAATACTAGCTGAACCAAATAGCAAT
TATGCCAAATTAAACAGGAAGTAACATCCCTCAAAGAAGTCTGAAACAAGCATGGGATAA
AGAATTCCTGTAAATCAAGAGATGCACTATATGTGACAAAAACATGCCTTAAAGCACTAT
TCTTAGGATATACTCCCTTTGTCCCATAATATAAGATGGTTTTGCAAGCAGTTTTAGAGC
TAAACGATCTTATATCATGGGATGGACGGGGTATTTTAGAGCTAAACTCAAAAAATGCAC
TAGAATTTGTTAGACAAGGTATAAAGCATACTATTCAGCTAAACTGAAACATCACAGCAT
AAACCTATCGGCCACTTGCATTCAAATCCATAACTGCATCTTGTAACACTAGTGAAGTAA
ATACCAAGTTAAATGGAACATTACTTCGCATGAGAGCCCAAAAGCTTATAAACAGGTCAC
GTGCAGTCAAACAAGGAAATTATAACCAAAAGGTAACCATACTGTTGAGCTAAATCAAAC
ATCAAAGCATCAACTATCATTCCCTAGGACATTATACCCAGAATTGATTCTTTTCACCAT
AGAAGCAAACCCCGAGTTAAAGGACAAGACCTAAACAATACTATTCAGCGAAATCAAAAC
AATCACAGTACAAACCGATCACCCACTCGCATATCAAATTAATAATTTGCTCAAGCAAAA
CCAAAGTTAAATGGATCATTACTTTGCACGAGCTCAAAAGCTTCTAAAAAATTCCACAAG
CTCCCGAAGAAGGAAACTATCACCAATAGGGCTAATATTCAATCATGTGTTAACCATGCT
ATTCAGCAAAAAACATCAGAGCAACAACCTATCATTTACTGGCATATCATATCCAGAATT
AACCCTTGTAACACTATAGAAGCAAAGGCAAGTTAAAAGGATGCATTACTCCCAAGAAGC
TTAAGCTAGTAAACAACATGTCATTAACTGGTACTCCCTCCGTCCCAAAATTCTTGTCTT
TGATTTGTCTAGATATGAATGTATCTAGTCATGTGTTAGTATTTAGATACATCATTTTTT
AGACAAACGTAAGACAAGAATTTTGGGACGGAGGGAGTATATCATTATCTAGAATTGACC
CTTGTAACACTATAGAAGCAAAGGCAAGTTAAAAGGATACATTACTTCCAAGAAATTAAA
GCTAGTAAACAACCTATCATTCACTGGCATATCATATCATATCATACCTAGCAAACAACC
AGTACATGAGTTACAGAGCAACCTATCATTCACTATAGTAACACTACAGCATCAACCTAT
CATTCACTAACATATCATACCTAGAATTGACTCTTGTAACACTACAGAAGCAAACACCAA
GTTAAAAGGATGTATTACTTCCAAGGAACTAAAGCTACTAAACAGCAGTACATGAATTGC
AGAACAACAAAATTGCGAGCAAAAGGCCTAATATTCGACCAGCCATAGCACTGTCAATTC
TAAAGCCTCAATATTTTTGAAGTGGAGCCTAAGAAACCACAGGGCAATACAGAATACACA
AAATCCAGTGCTTCCTAAAACAAAGATAGCATCCATGAAATAGCAAGAAAAGTGCAACCA
GGCAACATCAATAAGTAGTTGTGGCTAATGCAAGCAACCCCTGCAGCGTTAGAAAACAAT
GATATCAAACAAGCAAACATCATAAGCATAACTAGCATGCAAATTCAACACCACGTCACC
ACCAGAAAGCTTAATCTGGCAAATCATAAATGAGATATCCAGACCCAGACCTTATTTGGA
TCAAAGACTGCCAGATTTTGTCCCAGGAGAATCAAACTTAACAAGACCTACAGCAACAGA
TAGCATTGTCTCTCCAAACCACAGTTTAGTCCTTCATGACGCAAGATGATGTTTGGGCAA
GTAAAACGGGAGTGGTAAATCACCGGCCGCCCATTCCAGCAGCGTTGAGGCCGAGCAGCA
TGTTGCCGTTGTCACCAGAGGGGATGTAGGCAATGTTGGGTGAGCGGGCCAGCTCAGCGG
CGATCTCCTTGGCAGCCTCGATCCTCCTGAGCTCGATCAGGCCTGTCCCAGCGATGGCTG
TGGCCTCAGAAATGAGCCGTGCAGACTCACTTTCTCCCTCAGCACGCACAATGGCAGCGC
GCCTCTCCTGCTCGGCCTTGGCGACGAGGAACTTGGAGCGCTCAGCCTCCTGCTGTGCGA
CCTGCTTCTTCTCGACGGCCTGGGAGAAATCGGCGCCGTAGGAGAGGTGGGTGATGGCGA
CGTCGTCGAGTATGATGTTGAACTCGCGGGCCCTTTTGATGAGGGAGTCGCGGACGAGCG
CCGAGACGTGGGGGCGGTCGGTGAGGAGCTGGTCGGCGTTGAACTGGGCGACGACGGCCT
TGAGCACCTCGTTCCCGATGGAGGGGAGCACCTTGTCGTCGTACTCGAGGCCGAGGGAGG
TGAAGATGGTGGGCAGGTTGACGACGTCAGGGCGGGAGAGGAGGCGGAGGGTGAGGTTTA
CCATCTGCAGATCCTTGGTGCCGGAGTTGGAGGAGAAGTTGTGCGGGCGGGTGCGGATGT
CGAAGATGTAGGGCTTCTGGAGCCACGGCACGATGAAGTGGGTGCCCTCGCCGACGGTGT
CCGGCAGCACCCCGCGGAACCGGTCGAAGACGACGGCGCGCTCGCCGCCGTCCACGGTGT
AGAGCGACGCGGAGAGGAGGGAGGCCGCGGCGCCGAGGCCCGCCGCCGCCTTGGCGATGT
TGGTGAGGAACGAGACCGCCGCGGGACCGCCGGCCATGGTGGCCTTTCCGGGGGAGATTT
GGGGACGGGCGGCGGCGCGGGAGTAAAACCCTAGCGAGGATTTGGTCTCGGTGCGGGCTT
GGGGAGGGGAATGGGGGGCTGGATCTGACCACCTGTGGGTTTTGTTTGGGTTTATTTCTT
GGGAGAGAAGAAGCTAGACGGTGGGGTCTGTGTGAATGACAGGTGGTGGCCCGCTGTCAA
CCTTCGGACTGGGAGAGAAGAAAGAAACTCGTGCTTGTACCCGAATGGCCCATTTGGGCC
ACTAGCCGGTGTGGCAAGAAACTTTACTTGGAAAAGAAGAAGAATCACCTCAAAAAAAAA
AAGGAAAAGAAGAAGAAAGGAGGCAGCAGATTCTTTTTTCAAGGAAAAAAGTCCATTTTA
GACCATGAATTCGTAGAGGTCAGACGGAATGAACCCTTAAGTAGAAATCCCGGTCGATCG
TATCCTGAACTATGTAATCCCGGTCTAAATTGAACCCTAGCAAATTTCAAGCGGGATTTA
TCTGATTGATCAGCCCGCTTTAGTTTTTTTCGTTTAAAAATAAAAGCTTTATCTCATGGA
TCAAACTTGCGTCCCGGCTGCTAGGGTACCTGCCGCCTCTCGTTGTCCATGCGCGCCAGC
TATTGTCGTGGTTCTAGACCCATTAGGGTTGCGCTCTACTCATTCCGAATCTTTGCCGGC
TGGTGTGGTGCTGAGGCATCAAGTCCGCCCATAAGATCATGGATCACGGTAAGTATTATG
CTATTTATGTTTTGATTACCTAATCAAGCACATATTTTATGGCTACATCGCTATACACAA
GTTAGTAATCAGCAGCTAGTAGACACTTGCGTATATAGTAAACAGATTAGTTTTATGATT
TCTCTGTTATTAATTTACTATGCATTACATCGTTTCTGTTATTAGGAAATAAATAGCTGC
AAATGTCACATGTGTGGGGTTTTCTCTTCTTCAAATGATGTGTGATGGTCATAGAAGTAA
ATTTAGCATAATATAAATGTATTCTTTTGTGTTTTCAAAAAAATTATGCAATATTGTTGG
AAATATGCCCTANNNNNNNNNATAAAATAGTTATTATTATATCTCTTGTTTCAAGATAAT
CGTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCATAGATACATGTGTGGATATTC
GTATAACTTCG