Contig Data
morexGenes
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Map Locations of contig_45711 (6781 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_45711

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61636 4 1198 bp AK360609 Available Available None
MLOC_61635 1 289 bp AK366202 Not available Available None
MLOC_61637 1 128 bp AK362005 Available Available None
MLOC_61634 1 904 bp AK372857 Available Available None





CDS Structure of MLOC_61636






CDS Structure of MLOC_61635






CDS Structure of MLOC_61637






CDS Structure of MLOC_61634






Contig Sequence (6781 bp)

>contig_45711 6781 assembly3_WGSMorex_rbca.fasta
TCATTTTGCTCCGTATGTAGACATATAGTGAAATCGCTTAAAAGACTTANNNTTAGGAAC
GGAGGGAGTATATATGATGATGTACTCCCTCTGCGTAAGTTAATGTAAGGCGTGTTTTAG
ACCGGCCATAAGCCTGAGAAACTGTCTTACATTAAGTTACACAAGAGGTTGTATCATGCA
AGTAGAATGTAGCAACAGGCTTATAGGTACAAGTGTAGCATTGGTCATGACAAAGCCTGC
TGCTATCTTATTTCCAGGATGCACAGTTTTCTCTGAAGCCTGACCTCTTCTCAATTTGTG
ACCTGTTGTTTGCAGGTGGAGGGCAAGATAATCAAGGCGCAGATCTGGGACACGGCGGGG
CAGGAGCGGTACCGGGCCATCACGAGCGCCTACTACCGGGGAGCCCTCGGGGCGGTGCTC
GTCTACGACGTCACCAAGCCAACCACCTTCGAGAACATCAGCCGGTGGCTCAAGGAGCTG
CGCGACCACGCCGACGCAAACATCCGGATCATGCTCGTCGGCAACAAGACCGACCTCAAG
CACCTCCGGGCCGTCACCACCGACGACGCGGGGAGCTACGCCGAGGCCGAGGGGCTGTCC
TACATCGAGACGTCCGCGCTCGAGGCCATGAACGTCGAGGAGGCCTTCCAGCTCATCCTC
GGCGACATCTACCGCACCATCAGCAAGAAGGCCGTGGCCTCCGAGGAGGACAGGGCAGCG
GCTGCCGGGGTCAAGGAAGGTAAGACCATCAATGTCGCTGCCGCCGCCGACAATGGCGGC
GAAAAGAAGCAATGCTGCTCAGCTTAGGATGGACGATGCCCAGCGGATGTATGTTTTGTA
ATGGTTGTTTTTTGAGTTTAAAGCCTTGTTGATTCATTTTGTCAGATATCCTCCCTGCCT
TGTTATAGACCTGAAACTCACATATGTTCAGTTACTATATGATATATCAAGTTCATTGGT
TTATATCTCAGCCAAATGCTTCTGGCCTCCTCTTGTCCACTTTTTTCACAAGTAGGAAAG
TGCCAAAAAGACAAACTCCAGCTATGATTATATTTGGAAGATGACAAGATGATTGACAAG
CTAGAATTGACCATATTTTGATACAATTTATGTTATAAAGTATTCAAGACAAACTCGAGA
TAATTAGCAACAATATATGGTCCTTTCTGAAATATGGCAGGATGGTGACTGACAAGCTAG
AATTAACCATACTCTTCATACAATTAACCATATTTTTCATACAATACGAAGTAACGACTC
AAGAGAAACTCCAGATAATTAGCAACAATATATGAGCCTTTCTGAAATATGGCAGGACGA
TGACTGATAAGCTTGAATTAACCATATTTTTCATATAATTTCTGTTACGAAGTAATGACT
CAAGACAAACTCCAAATAATTAGCAACAATATATGGGCCTTTTCTAAAAGATGACAGGAT
GATGACCGACAAGCTTGAATTAACCATATTTTCATACAATTTTTGTCATCTAAGATCCAT
CAAATGCTTCTAAAACACTGACGAAGTAACGACTAATGAGATTCCATAACAAGCTCCAAC
TGTGACGGGTACATTAAACAGTAAGTAGCAACACAATTTCTGATGTAGACAAATTCTGTA
TTCAGTATATATATCCAGTTCACTGCCCTCCCCAGCCTTTCATGGTGAATCTTCTAGCCT
CCAGCCACTCAAGCAGATATCATGAGGTGAGGTGTATGGATGGAGCCTTGCTGAGCTTAT
CAGGAGCAGCAGCTGCTCTGCTGCTGCTGTATGGGCTGCCCTTTCATGTGAACATGGACC
GTCGATTTCCTCTCCGCTGCAGGTTGGCTCGCCATCCTGCAGGCAAGTAAATTCAGCAAT
CAGATAGACCCTATCAAATGGGAAGCATGCACATAAGGTTTTTAAAAGGCAGCGAAAGTA
ACCAATTTTTAAAATATATTGATGGAATTCCCAGAGATATTCTTTCCACAAGCATACAGC
TCATTTGATGATCTATCAGTGCCAAATATAGCAGAGAGGCCTCTAAAAATGTGCATTTCT
TGGCTTACTTGTTCTTGATTTCTGATGACATGGTTAAGAAAGCTGTCTCCACATTGATGG
ACTCCTTTGCACTTGTCTCCAGGAAATTCATTCCTAATGATTCTGCAAAAGCCTGAAATT
CATCCTAGATATTTTAGTCACTTGATTAACATATCTATATTTGGAGTAATTGTCCCGAAT
AACAAACAAAGACTGGAACCACATTAGAAGAGTATCAAGAAGAATAAAGAAGTTGATTTA
TCAAGAATGGAAGAGTTTCATAGTGTTTTTTTTTTTGGTCGGCAATTAGAGACGCATTGT
TCTATCCATTTAAATATTCCATGTATGGTCGAACTAAAATCATGCTTAGATGTTAGCCAA
CACAGCAGAAATCACCTGATTTTCCAAATGTTGATTAAAGCAAGTCATGAAATTGAGTAA
TTCGACACTAGAATTGTAGACAGGTCAAATAAATCTGTTGTCATTCAGCCTATGGCTTAA
ACTGTCAACTGAAGAAAAACAAGAGAGGGAACGGCTTACCTTGGCCTCCTCTGTATCGAC
GACCTTACTATCAACCAAATCACATTTGTTCCCGACTAGAAGCTTGCACACACTGTCACT
GGCATACCTATCAATCTCACTCAACCACTGCTTGACATTGTTGAAGCTTTCCCTATCTGT
CACGTCATATACGATCTGAAAAATGTAGCAAGGAGTATTAACACCACGGTAATCCTACGA
AAATGTAGATCCTCATTCCTGAATGGTAAAGCATAGTAAATGATGCAGAGTGAAAATGAA
CAAGTACAGTTCAATGATGACTAGAGTGAAACTGTGACACAATTCAGCCGGTCCTAAATT
ACTGTATCACATCAGGGAAGTAAAACAGGTCCAAAATAAATTAACGCCAAGTGAATAGGA
TAATCAGTAATACGAGTATCCATGAGGGCTTACAATGATTCCATGCGCTCCCCGGTAGTA
ACTGCTAGTTATTGTCCTGAACCTTTCCTGGCCTGCTGTGTCCCACTGAACAAGGAACAG
ACCATCATTACATTACAACAACCGGAGGATTGAATGGACACAGGTAGATTTTGTAAAGCA
ATGCTGACCTAACACATCAAGTCTCAACTAACAACTAACCATCAACGCGATAGCTTCAAA
TTGTTTGTCATTATGACTGCTTAGCAAGCATGTACAGTCTAATTTATACAGTAAGTAATT
ATTCGGGGAGTACACTGGCCCAATCTAAGTGCGGTGATTTACACACACAGGGTTTATCAT
AAAAGAACTCCATTACAATATAAAGCGACTCCTCTTGAAACAAATATAGGCTTTAGGTTG
GTGCAACCTTATCAACAGCGACAGGCGATAATCCACGACCAACCAGGCCATTTTATTTTT
CAAGCAAATATCCACCTCCCTAATGGAAATCAGCTAAAAAAAGGCGCGCGGACAGCGCAA
TTAATTCTACGAGTCACTGTTTCCCCCCCACAGTTTTAATACTGAAATTATTCCCACCTC
CCTGGTGCCACCACTTGGACAAATTTAACACAGAGTTAAGAACCGAAAAACTGCCAGCCA
ATCCCTCCTCGAGTTTTGTCGGGACAATGCATAAATCAGAAACCCCTAATTAACTTGCAG
AGTTGGTACGCAATCAAGGCGGTAGCTTCCAATTATTTGCAAGTATGACCGCTTAGCAAT
CATGTACAGTCTAGGTTGTAGAGCAAGTAATTACTTGAGGAGTACACACTGACCGAATCT
AAAGTTCGGTGATGCACACGCAGGGGTTTATCATAAAAGACCTCCCTTATAGTATAAAGC
GATTCCTCTCCTAACAGTTAAGAGCTTTAGTTGGTGCAGCGCTATCAACGATACAGAACA
AACGAGGCCATTTTAGTTTCCACCTAAGTGCCTGCTTCCCTAATAAAATCAGCTAAAAAA
GGCATGCCGTGGCTCAACAGAGTTGAGCCAATTGCTGAGTCGAGGGCATGCGCCACAACA
CGGTATATTTTCTAGTAGGTGTCACCGCATTCCCCCCACAATTATAGTACTGTAATCATC
CCCACCTCCCTGGTTCCACCACTGGGGGAGCTTAAATAGAGTTGAGAACCAAAAACTGCC
AGCCAGCCGTTGAGTTTTTTGCCGGGACAATGTATCGAGCAAACAACCAGAAACCCCTGA
TTAACCTGCAGAGTTGGTACCGACCGCTTCGGATAAAGCAATCCAGGCAACCTAACACCA
AGATCTAGGACGGCAGGCCCCCCACCAATTCCCACCCACCCTTGTATATCATGCTTCTAT
TCACTACAATTCGAAAGCGTCAATGGATAACTAAACCATCAAACGAATGAACTGGCATCA
GAAAAATCCCTGTAAACTGGAACTCACAATCTGCAGCTTCACCGACTTGCCATCCAGCTC
GACTGTCCGTATTTTCTGCGACGCATTCATGAAAAAGAGTTGAGCAGATTCGGTGAGAAG
CCCTGTGGTACTTGCAGGAGAAGCAGCTACTTAATGGAGCCCCATGAATAACAAACAAAA
GGGGATCGTCTGTACTGTTACTGTTATACTGTACTTACGAAATCAACTCCGATGGTGCTG
ATGTAGGTGTCGACGTACGCATCGTCCTGCAAAAAGAAAGGGATCGATCAATCAGTCAGT
CAATGAAACCTCGTAATTTTTTCTCCCTCGGTCGGAGAGAGGCGGAGAATTTGGGGGTCG
GGGTCTTCTCACGGCGAAGCGGAGGAGGAGGCAGGACTTGCCGACGGAGGAGTCGCCGAT
GAGGAGCAGCTTGAAGAGGTAGTCGCTGCAGCAGACCGACAATCGAGAAATCAAGCGAGG
AAGAAAGAAAGAAAGATCGGCGGGGGATGAACTTACTACTCGGAGGCGCTCATGGCGGGC
GCCGGCTGGGCTCCGGCGGATTAGGGAGAAGGGGGAGGAGCGCTGCCGGAGGGGGATCCG
GGGAAGGTGGATGGCGTGCGCAGATCGGTGGAGGGGGAGGAGGATGGTGGGGGGAAGCAA
AGGGAATCGGGCGAGACGTACAAGTCTCCGCCTTTTCTTGTCTTTGGTCCGGATATATGA
AGAGAAGCCGCCATGGCCGACGGAGGACGCGTGAGGGGAGGTTTGGGATGGCTTAGCGGC
TAATCAATCGGGAGGCGCAAAAAGTTGTCGTCTTTATTACATTTCAATCTTTTTTCTTTG
CTCCTTCTTTTTTGGATACATATAAAACTATAAGAGGTTTAAGCCTTTATTTCTCTTTTT
AAAAAAGAGTTGTTTAGCTTTGAATTCTCTTGTGGTTGTAGTACAAAGTTAAAAAGGTTT
TGATTCGATTGTGGAGGTACCGTGATTTACTAAGTGATGCTAACCCTGGTGTCATTGATT
GCGATCTTTTGTTGCTATTTTACTTTATACTTTCTCTCTAAAGAAATATGAGAGCGGATA
TTGAAAGAAAAGACACCATAGATATAGTAACCTTTGTATATGGATCATACCAGATGAACA
TGGGAGAGGCTGGCATAGCGAAAGTCCTATTTTACTCCCGAGCTCAAATGCTTCCTCGTG
AACTATAAAATCAAAAAAATAATAAAAAATTCAAAAGTTTCTGCTTTCTTATGGTAAACT
TTGATAAATGTTTTACATGCATATCAAAATCCAGCCCGAAATAATGTTCGTGCAAGTCAC
AGTATTTTTGGAGCATCGATTTTGTTTTTTGTCACGGCTTTCACAAATGTTATTTAGAGC
TGAAATTTTGCAAGCATACAAAACATTTGTCAAAGTTTATGATTGATATTTTTTAATTTT
TTACTGTTTATGAGGGAACATATGAGCTTGGAAGCAAAACTCTATATTCCTGTCATAGAT
GCTAATGAAGAGGAAGTAGTTACTTCCAAGTGAATCCTCCCTAGATACCTAAACCCATTT
TATTATGACGATCCATTTCATGAATATACAAATTGTACCAAAGATGCTAAATTATTTTCC
TTTTTTTAATTCTAACTTAAAAAGATGAAGTAATCATATTTTGATGCTGTAATTTTCTTA
AGTGTTGTTACCGTTTTATTTTTAGATGAACAGTTATTATCTGATTGTTAATTTTGTAAC
TACCATCCTTTTTTTATGTATATTCGATATTGAATACTACTCGTAGTTATAACATTTTTT
TCATTACTTGCACAATTGCATTGATAGAACTATACATTCGGCTAGGGCGAAAAATTTCTC
CATGCCTCATCGATGTGTCCGTGGATTCGCCTCCCATGGAGTTACCGCTCGACTGCCGGT
AACGGGAAAAAGAATCTCGGTGGCTCTTCTTGAATTAAAAATTTATTAGTTTATAGATGT
TTTTATTCTTTATAGGCGTTAAAAATTTATTAGTTTATACTAGATGTTTTTATTCTTTAT
AGGTGTGATGTTGGAAACGCTTCTTCTTGGAGTTTGTCTTTGGGATTTTGGTTTCTCCTC
AAGTGGACTGAAAAAACAGGTCGTGGGTGGGTCCACCCTGGTCAGCGGCCCATCGCTCTC
TCCCCCCTCCGCATCACACCCGCATGGCCGCCGCCGGGTTCCGGCTGCGCCAGCGCGTGC
ACGCGTCCGGCGACCCCCGCCGGACCGGGACGGTGCGCTACCTGGGCCCCGTCGACGGCC
ACGCGGGCGAGTGGGTGGGCGTCGACTGGGACGGCGGCGCCGGAGGTCGCCACGACGGCT
CCCTCGCCCGCCGCCGCGACTTCTCCGCCCCCGCCCGCCCCCCCGCCCCCCACACCCGCC
C