morexGenes - Barley RNA-seq Database

Contig contig_45636
Source Contig contig_45636
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45636 (6504 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_45636

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61564	1	1648 bp	MLOC_61564.1	Not available	Available	LOC_Os04g58710.1, FRAME:+3, EVALUE:3e-13, 13104.m06176 protein AMP-binding domain containing protein, expressed
MLOC_61565	6	3895 bp	AK363789	Available	Available	None
CDS Structure of MLOC_61564

CDS Structure of MLOC_61565

Contig Sequence (6504 bp)

>contig_45636 6504 assembly3_WGSMorex_rbca.fasta
AGCGTGCGTCCCATCGGCACTGTGCTTCCCAGATTATGCTTGACACGCGTCGACTGGAAC
GACACGTATCAAGTGGCTAGGGGCAGCTGGCTGTTGCGCTGGACGTGCACTGAGGTATTG
GTAGCTCCCCCGGCAAGGAGCTTACCGGGATCTTGCTGCCTTCTTCCCGGCAAAGGGGCT
TGTCGGGGCCTTGCTTCTGGTATTCGGTCTTGAGGCTTCGGGGGCCTTCAAGGTATCTTC
TCGCGGGCACTTTGGGAAAGTGCCCTTGCCGAGATCGTCTTGCCGGGGGCTCTGCTTGCC
CCTGGCCTGGGTTCTGCTGGTTCTATGCCAGCCTCCCCCGACAGAAGGGGCTTGCCGGGG
TTAGCGTCATACCGCCTGCTTGAGAGGTTCTTGTGGGGTTTTCCCCTGCCCCTCGGTGTC
CCTGGCAAGGCTTGCCGAGGGTACTACTGCCCGTGAACAAGTCAGGGGCGCTAAAGACCC
CTTCTTTAGTGCACCGACACCGACCAAGTGCCTAAACTTGACAATAAGGTTCATTTTCCG
CCAAGACTACATATCCGCGCCATGTACTGGTTTTTCCAGAGCAACGAAACAGGTTGACGC
TTCCAATGTTCCACGTGCATGGCCCCTGCTGGCCATGCTGGTCTCCGACGCGTCCGTGGC
ACTCCCAACTACCATCCGCTTGTCCGTGGCACTCCCAGCTACCATCCGCTTCTTAGCATC
CACCTTTCTAGGCGGTAGGCAGGGGCCACTAGGTACACAAACGTGGCCACCATCGACCAA
ATCATCCTGGACCGCCACAGGTCATGCTCGGAGCCGCACTATCCGCTGCTTTGCTTTGTG
CACAGCTGTAGTTTGTCGCTGGCACCGATGATCCTAGAGTGCCTTGAGTTTGTGTTCGGC
ACGTCGATGGTGGTGCCTTGAGAAGACCTCGCCCGGGGGTGTTGTCGAAGACGTTCTAGC
CCACACACATGCTCACCGGTGGGTCGGCGTTGTTGTTCCAGCCCACGCGCTGACGCCAGA
GCCTCGCCCAATGAGTCACACAAAACTAGCATTGATTTCCCACCTGATACTGCACAAGGC
GCGTGTTGCCCCACACCGGCCATGCACACTGTTGTTGGCCCCACCTTCGTGGCTTGCCCA
CCACTCCCCGCCTTCCTTGTCTCGTTGGCAAATGGCGCAGCCAGGTGTCGTGGTCATTTT
CGAGCCAGAGCGGTGTGCTCAACATGCATGGCCAGCTGATATCTAACGTCTCCATCTTCG
TGGGTGTGCTAGTGTCATCTCTCAAGGTCAATAGTACGCCAAGGCCAATACCAAGTATAA
AATTCAATGTATCTCCCTACTAACATGGAGCGTCGTCTCGTGTATTGGCTGGCTCGTGCA
CGTGGCACCTGAGGTCCCCGTGTTTGATCCCCCGACGCTTCCCATTTCACGCTCCTATTT
CTTTCCCATATGTCATAGTGAGAGAGATGGAGATTTATTTCTCTCGTATGCTGACAAATG
GGAACACTCGAGTATAGCTGGCCATGGGCAGCCCGGCCTGGACGGCCCGACCCGGCCCAA
AAAATCCCGGGTTGGGCCTAAACTTGCCATCGGGCCAGGCTCAGGCCTGGAATTTGAGCC
CGGCGGTCGGGCCAGGCCGGGCTCAAGCTTGAGGAATGCAGATTTTAAGCAGCGGTCAGG
CCAGGCCGGTCGGGCCCAATCAAGCTTTTTCAGGCTCAGGACGGGCTTGGGCCCAATATT
TAGGCCCGACGATCGAGCTTGGGTTATCATCACCGGGCTTTTTTCGGCCCGGCCCGAAGT
ATGCTCAGGTATACACTCGAGCCACATAGGCAGAGTTGACGACTACGGATGGATTAAGTA
CCTATTGTCACGTTTACTCATGTTTTGGCACTCAATCAGTGTATTTTTTTAAGCTGTGGC
ATCAAAGTGACCATCTAATGCAACTTCATGTACCATCAGTGTATTTGACTCTTTAATTTG
CTATAGCACATGGTGTGGGACCCATCTTATGGCCTCCTTACCAAGTAGCATTTGAAACAC
CCTGCATGAGTCAAAATTGAAGTGTTGACAAGGTAGTTACAGCAGTTTGCAGCCACGATG
CAAATGTGGCATTAACACCATTTTCTCTAGAGTTACCAATGTCACAATTTTAGTGATCTG
AATGTACCTACTTGAAAAGGCGCCTGTTGTGCTTTACTAATTACTATGTGCTACATCACA
TTATGACTTATACTACTACCTGAGAAGACTATGATGACAATGAACAACTGAAGACAGAAA
TCATTTAAAACAATGAATAATCCTATAGAAATAACAGTGGTGGGCAATTAATATTCACAG
GATACATCAGGGTTGTTTGTTCGATGTCTTATTACCTTCACTCGGAGTGCCTGTTGAAGT
TTGGCCGGCTTTTCCTGACAGTAACTGTTTTTGTGTATTGGCGAAACCATTCGAAGCGTT
ACTTGTTGAAGCTGATACGGTATCACTTCTGGTCATGACAGATCTCTTTTTCTGCTTGAA
GCCAAGAAGTGCCTTACCATCATATTCTACAGCATGCATCCAATCCTCATATGCTTTCTT
TACCAACGTGTCAGCATAGACCTGGATTTGAGTTGAACATATTTGTGTTTCAGTACAATA
TCTGTGCTTAAATATAATGACTTGAGTGAAAAAATATTTCATGAGGAAAAGAAATTTAGC
TAAGATGGTAGAAAATGCAGATTAAAGAATCAAAACTGCTACAGCTCATATGCACATAGC
ACAAATAACTTCAACTCATACAGCACCCAAATAGCAGCAGTTACTTTGATTTAATTATAG
TTGACAACTTAACATGGACAACGCAAAATGTTTAGAGCTAAGAACTCTTTTGAAGTTGAA
GTTTATTTTATTTTTTCTGTTGAGATGAGAATGGTTATAATTTGGCTGCACCAGGATACC
AAAATAATCATGCAAATATGAATTACTAGTGATGGGAGTTTGAAGAACTCTAAATTGACA
TAACCTCTCCAAATTATACAACGCATACTACTGGTCTATCGGTATCCACTGAATGTGTGG
TACTGAAATTTAGCTAGAGAAATCTGTGTGTTTATGTGTACTGCTGGAAGGGCCTGGATG
TGCGGTGAACATGTTGAACGTAGGCCAATCTGAGTGATAAACTGGTATCGTACGGCAGAA
CACAAGTTTGCAGTCTCATGTAACAACTCACTCCACTATACAAAATCTCAGCCTTACAAC
ACCAATGAATTTATAAATATTTAACAGGCTCAGACATGTAACTGGACTTATTATTCGGAA
ACACATAAATAAATATGCAAACCTTCTGGTTGTCCGTGAGATTTTCAGCTGAAATGAACT
GATCATCAGCAATCAAGCCAGTGAACTCATATATGTTATTGAATATTGCACCGATATTTC
TTGAATCATTCACATAATATATATAATGCTTCCCACCTAAGACACAAGTCTTTGCATGCT
CAACAAGGCTTTCCCACATCTTATTTGACATGCCACTGCCAAGAATCTACAGAGTCAAGA
GTGTTAGAACATAAACAGAACTCCATAAATTACAGTCTGATAACAGGCATAATAGAACTT
ACACTTCGTAACCTCTGTTGATCCCTAACAAGAAGACGAAGAAAATCTTCAACTGTATAG
ATTCCGCTTCCATTTAACTTCTTGTGGAATGCACCATCCTTGCCAACCTTTTCTAATCTC
CAAACATCATCCTTCAAAGCAGGAGGGTAGTGTTTTTTGTACACTGCAAAATACAATATC
AGCCTACTCAATGCTTGAAACTTTTAACAGTACGAGCAGATCAACAATGTATGGATACAT
ACATTCCCCTCTATGATCCTTAACAGTAAAAGCTTCTGTCTTCGTCTCCCTAACACGAAT
ACCTTCACAAAAACCAGAGGCAACCCTCAGCCCAAGTCTGAATTTCCTGCTTCTTATCCA
GCTTGAGTTGTCAGTGAAGATAAGCTCCCCTATGGTTCCAACACCTTCTTTAAGAGTCAC
TTGGAGGTCACCAGTCAAGAGAGGTCTTTTCCCTTCGCGCTCCTTGACAATATGGCCTTC
GAACTCCTCTTCTGTCCAACCCTCATCTTCCTCATTATTGAAGTCACCCTCAAGCACAAG
AACATCCAGCTTTGCACATGATTCAGGTCCCGAAGTGACAACACAACCAGTGTTGGTATC
CAGCAGCACAACATGTATAGCTGCTCCCTGCTCGCCTTCTACTTTTCCACCAGTAAAGAG
TGGGAGAGACAACCTGCTTCTAAATTGAAGCTGAAGATTTGTCCCATCAGGGCCTTCTAT
TCTTTTGGGAGAGGACCTGTTTTCACTATGCATTAGTATCGTATCTCACGAGTGTGGCCA
AACCACATCTGCAGAAAATCTGAAAATCCCAGATAAAGCCATCCCATGAGTGTCACCACG
TTAAACAAGTTTATGATCTTGTACCTTCCTTCAATTCTAGCAGAACCCAACTTGGCCAAA
GCACGCTCTACCTCTTCGCTTACCTATTCGCAAAACATGGAAAAACAGAATGATCAACAT
GCTCCATCAAATAAGTCAATAAACCATACAATAAGTGCTTCTACTCACAACTCTTCGAAG
AATAGGCTCCAGCGATGAACAAAGCTTCTGCAGACTGTCAACTTTTAGAGCTTCCACAAT
GACACTACAATATGTGTCCTTTGTTTAGTAATCAAAATTTCAGAATGTTACAGACAAGTA
GAATCATCGTTGCATTCAATTTGAAGTGTACAGACACAACTGTAGCGTATTGACTAATTC
TTTCAAACAGGTATTCTTAAAAACTATTAGCATCATTTGACAGTCAGATCATCATTGTAT
TCAATGCATTATTAATGTTATAAAAGCAGTGGCGACACTGCATGTAATCGACCCTATCTA
AACCAAATAATTCAAAGCAACATACTAAACTACCTTGGCACTGTAAAGATTTTTTATTTC
TATAACCTATCAAGAGTTCTACAATAAGGTATACCCGTTGCTGGTGATTAAACATATGGA
ACTTTCTGGTGCATCAATGCGGTATGAAAATGTGTCATCATATATCATAGAAAAGGAGTC
AGACAGAACTGAGCAGGATGCGCAGATTTGTGCTGTCAGCTGGTGCTCTGACACAGAGCT
GAGCAGCACTCATTGAAGTACCAACTGAGTACCAAGCACAAAAACAGGTATGCGACACAG
TGCATTTTGGACTAAAATTATCATCTGGACTCACTTCCTTTAGCTTACAATTTTAAGAAT
TAAGAAATGTGTTATGCTCACAGAATCATCTTGGGTCCAGGTTCCAATCCTACTCTTACC
TAACTGATTCAACTAAAACAGGAATTAGTTAAGCTGTAGCACCCCTATTCCAGCCAGTAG
GAAGCTTAACAGCAACATTAGTAATAGAATTAGAATGAAGGTAAGTGGAGGACCTAAATT
TCTTCCTAATTAAAGCAGCCGACAGCCTAAACCCCAAACCTGAACTTGTCCGACAAACCC
TGGAAATTTGGTACTAGGCAGAAAGAAACACGCACCTTGCAAGGGCGGGTACGCGAGGCC
GTTTGGCTGCATGGTCGTCGTCGTCGTCGCCGCCGCCGCCGCTGCCGCCAGTGCCGTTGG
TGGGGTCGAGCACACGCTTCGAGCCCGACCGCTGCAGGCCCCGCCCAGGCCGCTGCATCA
CGCCAAAACTCCTAACCCTAGCAGCCTCCTCCGCCGCCGTCGCCGTCGCCGCCGCCGTCA
GATCTGCACCGACCGCCACCACGAATCCAGGTCAAAAAATAGTAATTCCGTGAAGAAAAC
AAAAATCAAAAAATAAAAGCAGCGACCAGAACCCAATCGAAGCAGCGCGATACCGTACCG
GTGCGGCCGGCGGGAAACTCAGGTGGATCGAGAGGGCCGGGCAAGAGATCTGCACTATTA
GTAGTGTGGGGGTGAGTGAGCGCCGCGCGGCGCCTGCTCGTGTGTTTGTTTGTGCTCGCT
CTCTACTGCCCGACTTTCTTTACGACTTTTACTAGGGGACGCTAAACGCCGGCCGACCGG
TGCCAGCTTCGGGCCGGTAGCAGATCCGTAAGCTAGGCCATCCGGCCAAATAGCAATGGA
CGAGCTCGTCTTTTTCCGCCCCAAGCAAATCTTAAAGGAAAACCCTTCCTATAGTCTGAT
AGGAGAAGAGCGCTACATTAGTCGACAACCATCGATTCAATCCGATGCTCATAACGTGTT
TTTGGTATGTAAGGGAAAAAAAAATCCCGTCATCTTGGAATTAATGTCCTGCAAATTAAC
CTCTCTCTGATCTCTCGCCCCAAATGCCTTGATCCATTCGTCGCCAACAGCACGGACATG
CCCAAGCTCGCCTCGCCCAAATCCCCTTCCACCCGTGCCTGTCGCCGCGATCGCGTCTCG
CGCCTCCTCGGTCTCGCCCCAAGCCGGCCTCCCCTCCAAGTCGTCGTGTTGTTCACCATG
GACTCGACACCAGCCAGTTTCTCC