morexGenes - Barley RNA-seq Database

Contig contig_45620
Source Contig contig_45620
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45620 (8463 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_45620

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61547	1	1387 bp	MLOC_61547.1	Available	Available	LOC_Os08g30100.1, FRAME:+1, EVALUE:7e-97, 13108.m03115 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
MLOC_61548	7	3184 bp	AK371533	Available	Available	None
CDS Structure of MLOC_61547

CDS Structure of MLOC_61548

Contig Sequence (8463 bp)

>contig_45620 8463 assembly3_WGSMorex_rbca.fasta
TGGGTGTGCAAGTCTTGCGCTAGTAGTCAGTGGGACAGTCAGAGATAACTAATGATTTAG
CCTTCTATTCTGTACTTAACACTATATTCTGTATCCAGTGCGGTCAACTGTCCCGCCGAG
CCAGGGGCTTTTCTGAAAAAAAAGACAACGGGCACGCCTCTCCAGTGGCTGACAAGGGGT
CCCACGCCACGCTGTCAAGCCTAGTCAGCAGCGAATCCGTAGACAAACGTGTTTCGCACC
GTATTTGAACCAAATTGCCAAATTTTAGCACTTATTACGTGTATTTTACAAGTTGAGGCA
CCAAACTAAACATCCAGGGCAAGTTTAGGCACCAGTGATATTACCTTAAAAAAAAGACAC
GGTCTCTAACATTGTTAAAAAAGTTAGATCATGAAATATTTTTTATACAAAAATTATTTT
ATATTATTGTTTAGGCTTAACATCAGAACAGTGATTTCGGCCCACACCGCCCCAGCCTGT
CGTACGTGCGTGTATATCCGGACACCCCAGCGCCGACGACCTACCAACTGCCAGCCACGC
TACGCTCCATTCTCCGGCGACATGTCCACCACCACTACCGCATCCACGGCCGTCCACGAG
CGGCGCCGGGCGCTCCAGGCGTTCGACGACACCAAGGCGGGCGTCAAGGGCCTGGTCGAT
GCTGGCGTCACCGCCGTCCCGGCCATCTTCCACCACCCGCCGGACTCCCTCCCCCTCGAC
GCGTCTCCTCGGCCTCGTCACGAGCACCGGTTTCACCATCCCGGTCATCGACCTCGCCGG
CCTCGTGACGCCGCAGGGGCGAGCCTCGGTGGTCGGCGCGGTGAGGGCGGCCGCGGAGAC
GGTGGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGGAGGCGACCACGTCCGGGATGCT
CGCGGCGGTGCGGCGCTTCCACGAGGAGCCGGCCGAGGCCAGGGCGCCCTACTACAGCCG
GGACCACGGCCGGCGCGTCAGGTACGCCAGCAACTTCGACCTGTTCCAGTCACCGGCGGC
CAACTGGCGCGACAGCGTCTACATCGACATGGCGCCGGACGCGCCTCCGGCGCCCGAGGA
GATCCCGCCGGCGCTCCGGGACGTCGCGCCGGAGTACGCTGCGCTGGCGCGGCGGCTGTA
CCACGAGCTGCTCGGGCTGCTGTCGGAGGCGATGGGCCTCCGCCCCGGGCACCTGGAGGA
GGACGCCGCGTGCACGGACGGGCTCAACCTCGCCGCCCACTACTACCCGGCGTGCCCGGA
GCCGCGCCTGACCATGGGCACCACCAAGCACTCCGACCCCAGCTTCCTCACCGTGCTGCT
CCAGGACGCCATCGGCGGCCTCCAGGTGCTCGTCGACAACCTCGAGGAGGACGGCGAGTC
TTCTGTCTGGGTGGATGTGCCGGCGGTGGCGGGGGCGCTGGTGGTGAACGTCGGCGACTA
CCTGCAGCTCGTGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGGGTGGTGGCCAACGG
CGCGGGGCCCCGGGTGTCGGTGGCCTGCTTCTTCCGGACGTACGGCGCCGCCGCGTCCAC
GAGGGTGCTGCGGCCGATCGTCGCCGGAGGTGAAGGAGGCGCGCGGTACAGGGGCGCGAC
GGTGGAGGAGCTGCTCCGGCACTACCGGGCCAAGGGCCTCGACGGCACCTCCGCGCTCCA
CCACTTCAGGCTCTGAATGAATCTCGTCGAAACTACTCTACTTTTGTCTCGTGTTAGTTT
GTGATCGGAAATCATGCATATTTGGATTTGTATCCTATGTATATTTAAGTTCTCTTTTCT
AATTGGCGAATTGTGGATTCCCTCGTGGGTTAATTGGTCATACTTTTTGGACTAGGGATA
CCACTGTCCTCATAACAATTCAACCATAGGATGGTTCATGGTTAATTGGGCATTGGATCG
ATGTAGATTTCATGAAAATCAGTCATGATTTTCTTCCCAGAACTGCTGATATAACATCGC
ACAAATATAGTGCACCGTAAAATATAACATCCCTCGTCAGTGGACACCTTCCATATTATT
TGCATGATGATTGATGATGAGACCACAAAACTAAGATACTCGGTCTGCGTCACTGATCCA
CTCTATCCATCTTCATATCTGTAATTTTGTATCCACTTAACTCGCACGAATTCAGTAAAA
ACACATAATATCTCCAGCTAAGACTATGCAAAACTTCCATGGCACATTTTACGGCCACGA
TCTAATCCAACTTGCGTACAACAGATCATAAAGGCGGCGATTATGCTACATAGCAGCCCT
AGAACAGACAGATTATTCATCTCAGTCACACGGCAACAGGCCGTTTCGGCGGTGGGTGAC
GATGAGCCGCGAGCCTCAATGCCATTCTCCTCCTGAAGAGCAGGTAAAGCGCCAGCAGGA
AGAACAGGGCCAGGAGATACAGCCAGAGGTAAGCTTCCCGGAGGAGGAAAGGCTTGCCGG
TGTTGCTGTTGTCATTGCAACTGCAGCCGCAGTCATTGCGGAGCGGCTTGGTTCGCCTGA
CAGCTCCGTCTGGGTCCAAGATGAAGTCCAGATTCGTGGCTTCGCGCCCCAGCATGACAC
GTGTTCTTTTCGGTCTGTAGCCTTCCATCGACGCCACAACTGACAGTAACGAAAGAAAGT
CCATTTGATGTTATAGCAATGGATCGGAAGCTCTTATGTATCCAAGAGTTCCGAGTGAAA
AATGAAGAATGAAGAGGAGAAACATCCTGTTCTTAGAATTCCACATCCATGTTTATGTAT
GTATGCAGGCGATCTAACCGTATATGTGTACGATGATGATGTTTTGGATAGAAGGAACAT
ACAAAGCCTACCTTCATAGCTCTGACCAGGTGCAAGAATCCTATGGTAATCGCCAAAAGA
TCCGCTAGCATTTATCTATGATCAAGCATGGGGCAAGTATTAGGATCTCTCAAATGATAA
AACCGGAAATCTCTAGAACAAATTTACCCATTCATCCATAAGGCCACAAAATAATCAATT
TGCATCTAGGATCCAAATATCACTTACATATACCTCCCTCGATATAGGTTAAGGTTGCCA
AATAATCTCACCTTTGAATCAATTCCCTTCACCATGAGTGAGCCTGGTATAGGACGGCCA
GTATCTGCAGCAAATATCCTTCCATGAACTCCTGTCTGAAACAAGAGTTAATATGGTGCA
CGCAGTGATAAACATTGCTATGTCTTGAAGAAAATGAACAGCAGGGAGCAAAACCCAAAG
GAACAACTTTGATAACACCGGAAGGTACTATTTCAGAAGGGACAGAGAATGAAATGGCGA
CATGGTGCCTCAACCCAGACCCTGCTACAAACATAGTGACTGAAGAACCCTGTGCCTCAA
CCCAGGCCCTGCTACAAACATAGTGACTGAAGAACCCTGTGCCTCAACCCATATACTAAC
TGACCATTTCACTTCAAATAGGTCGAGGTTATTAATTCTTTCTGGTGCATAACCATAGGA
ATCGAACACTAGAAACATCTTACCTTTACAAGGCTTGCCACAAGATTGAGCATGCTCATC
TTATTTTGCTTCCATATGACAAGAAGCTGTAGCAGAAGATTATACAGAATATCAGAACAA
AAACATGTCTACCAAATGGTCTACAGCAGCAGCAGCAGCAGCACAAGCGTAACAAGATGC
AAAAGTACCTCAGATGCTTTTGGCCATTTTACATCACTAATTTCAAGGGTTAACTCAAAG
CAGCCTCCATGTATATAGTTCCAGTCTTGCATGCCGCCATAAATTGGATACCTGCAACAC
AAACCATAAATTGCTGCTATGTTAGGTTTCAAAAGTAGCAACACTCACTGGAATGTTAAT
ACATCGAAAGTTTGATATGGTGTAGCAAAGCGATATTTTGTTTCCTTACCAGAGCGCTCC
ATTTGTAATGCCTCCTTCGAATTCCTTGCTCAAAGACATGTTATAGTGCGATTGACTATA
CAGTGACGCCATGTACCTGAATGTCTTGTCATCTGGACATCCATAATACTGTTTTCTGTA
AGCAAGACAATCTATGTGAGAATGCTTAAGTCTGAAACCAAGCAAGTTTGTGGTCCTAAA
GACTATATGTGAATGAAAAATAGCAAAACAAATGCAGTAACTGCTATACTGAACAAAAAC
TCAGGCAAAAATATTGCATTACAAGATAACATTGTATGACATTAAAATCTAAGGGTTCCG
ACACCGACACTTGCGATATATTGATTAACAGCCCATTATTTGCACGACTCTGTTGATCAG
CTGCTCATAAAACTTTAGCTGTGTGCTGCTTATCTATCTTGATGGTCTTATAATAAATAA
GAAAAAGTACATCTAACAAATCTATGGGGCATCAAGAGAATGCTTCCGTTTAACAAGCAT
GGGTGACCACATGCAATCCAACCTCTGCATAAACCACTTGCAAACATTAAAATTTCAGTA
TTAGCAATGACTCAAGGAGGCAAACATAAGATATGAGTGTACATCATTTGAGGAGGATAA
TCCTTGGTTAAAATCTTATTGATGTATCTTAGTAAGATATAGAGAAACAGGACACACAAA
AGTACTAGCAGGGGATCTTGAAACTGAATGTAAGTTACAAAAGTGGCTACCTTGTATCTC
TAGATCCATCCCATGGATAATTTGCAACAAGAGCACCCTGCAAAACTCAAATCAGGTGGC
AATAGATGGCAATCAGTCAATCAGGAGCTAATTGGTAATGACTAAAGAACTATATACTAG
AATAATCTATATATCAGAATAATGTCCATGAAACAAAGAAGGGTCATCTGAAAATGAAAA
AAAAAAAGGTGAATTCCTAGTGTTGGACCTTCAACAATTAATCCTGAAAATGGATAGATG
GTAGAGTGGTATACAAATGGCTCTTTTCTTTTACATAGTACATCTTAATCTTACATATTG
TAATTCGTATCGTCCTATTTGTGAACATCACCTTTCTAGTATTAAAAACTGAAAAAAATC
TTCTACAATCTGCCATTGTTGTTATTTTTCTTCCTTTAAACCAATTATGTTGGCACTTCA
AGATCAAATGGAAGTGCACCAGAGGTGCCCACAGGAATTACTAGGTTAAAAAAAATAGTT
CTAGAATTACAGGGTCTGACCTGATCCAAAACATCGACTTTTGGAAATTAATACTCCCTC
CGTCCCAAAANNNNNNNNNTAGGTTTGTCTAGAAATGAATGTATCTANNNNNNNNNACGT
GACTAGATACATTTATATCTAAGACAAGAATTTTGGGACGGAGGGAATAGTATACTCCAA
ACAAGAAAATACTTCACCACATAGCAGATGGAGAAGAAATAAGACTAAATATAACAATAT
CAAATCCATCAATTGCAGCGCAAATATGATTTGCTTATGCATTTTCTGTGAGAGAGGTGA
TAAATTGAGCAAAAAGTGATTAGAAGCAAAGTTAACAAGTGACCACAACCACTCCATATA
GCAGGCTGAGAATAAAAAAGATACACAACAATAGGCTTGTTCTGGATATGACTTTTTGGG
GCACACAAAATTTGGGGCATTTTCATAAGCAGAACACGACAGTAACCCCGAAATAGAAAC
AGAGATGTGGCCCACTACTTGACGAAGTAGCCTTGACCATAGAAACATAACTGGGCGATT
GAAACACTTAACTAATCAAATAATTTCACAAACAGGGTTGGGGAAGAATAATTACCCCAT
GCAAACTAGCAGAGGCTGTGAAGTGTTCTTGCTTTATCCAGTTCATAATAGCTCTAGTTT
CAGGTTGCCGGTGCTTAATATCATCATTGTTGGGGAAAAACTGCCAGTAAAAAATGACAA
TTTAAGTTGAATGACTCCAAGAAAAAGGTAAAGTGCAAACGGGGTTATAGAATCTTCCAT
AAAGAAATTAATGCATCGAGTATGTACTTGGTCAGGAAAGTCCCTGTTGAGATCAACATT
GTTTGCATTACCACGCCTTCTAAGAGCAAATCCATCTGGATTCATTGATGGAAGTATATG
AAGGTGTGTGTTCTCCACAATAAGAGCTGCCTACAAAATTAATTTAACAGCTAAGTTCTG
AGCACAGCATATTAGTATCAATTTCCATAGAACTGGTGGAAATATTTTGGAGTAAGTTTA
CAGAACAGCTTTGTTCAGATAAAAAAGGTGAGCACATTATCTCCAATGTTGAAAAATATG
TTGGACATTACATGATCCATTGCAATGCAACCAGAACAACGTAATTCGCAGCATGTTGCA
GAATCTAAACTTTGTTCCATAAATTAATTAATTTCTACTGTTGTTAGGTAATAGGTACTA
CGTTTCCTTTTCATGTCATGTAACAAAGAACTCAAAATACTATAGATTGTTTATCACATA
ACCAAATTGTAAGTGGCTGGCCAGTCAAAAGCTCCATGGCTAAGCAAAGAGCCTGTAGCG
ACTAGGGAACCGCATACCAAAGGATCCTTCAGGTAGTTATCACACAGCCAATACGCAAGT
TGCATAAGGACCTCTCTTCCAACAGGCTCATCACCATGGACATTCCCAATAAACTGCAAA
TTTCCAAAACAAAAGCTACATCAAAATGGCAACATAGATAGCTCTTACTTATATTATACT
AAGGACTGAAATAAAAGAGTTCAAGCAAGTTAGCTGAATTAGTGCCAGCATAACCTTTTA
AGCTAGTTTCTACAGGAAAATCATGTTCTTTGGATTTTGGATGTGATTCCATTACAGCAT
AGTTAACTCTTATCGACATGGGAAAAGGGGGTAATCCCATGAAAACTCACAAAGAAGAAG
AAAGTAACAGTTATAGTGTCAAGGAAGTCATTCTAAATACGAAAAAAAAAAAGAATCCCG
TTGCTGTTGAGTCACAGCTGTTCTTTCAGAGCACCGGAGATAAAAGGAATGATAAAACAA
GATGGTCATCAGGTGGTTCAAATTATAGAACACTTCCTTGCAAAATTTTATAAGAACAAC
CCACTTCTTAAGGATAAAGAAATCACAAACCTTGAATGCTGGTTCAGCTTCTCTTTGCCC
AGGCTTGTCTGATATTTCAATGGCCCACTACAAAAGCAATCAGAAAACTTATCCAGTATA
CAATTTTGACACCGAATAAAGCACTAAAGCTATCATCGTTAAGTTACATACCAATGGGGA
ACCATTTACACTCTTCCCGATGCTGATAACAGGTTTGTGTAATCCCTCAAAGAGAGAAGA
AAGAATAGGTAAGTGAAGTTTGGATATATGAGCACAATGGAGATCTATCAGACTGGAGAA
TACAGTTGTACACATTAAATTGATTATCCTAGGCAGAAGATTAAGTTATCCACACATAGT
ACTTCCGAAGCTTGCTGCTCAAAAGCCAGGTAACTAGGGACTGCAATCCAGAATTACACA
TATAATTACACACACAGTTTATGAATGGACTTAGGTTTATAGAAGTAAGAATGAAGAAAA
AAAAAACTAGTACTATTAATTTTTGGCCTTCACATTAACTTTTACATTAATTATCTATCA
GTGTAATTATGAACTATTGAACCCCATTGTGATCAGCGGTGCATTTTAATTCTATTGCAT
ACCTACCACAGTTGGATATCAACCAAACTAAAGATATGGTCGAGAAACTCTAAGCACACT
CATCATCAGCAGGTAGCAAAGTATTATACATCATATACCTGTATGTCCTGGAGATATTAG
CACAGCGCCTCCCAAAGTCCTGTATAGCACTCTCAAGCTCAAAGTTGCTCATATATCCGC
GAACCATTTCTTCCCTAAAGTTGCCGGAAAAGCCATTGCAGACACGTTACGGCAAGCATT
CCCACGCAATAAAAACATGAATAGAAAGTGAGATCTCCGGTCACGGAACGTACGTGATCT
CGGGCTGATCCTGAAGGAGACTGCGCGAGGACGACCCATGTTTCCTATCGGCGATGCCTG
GTTCACAACAACAGAAGACTGATTGGGTAAAGACCATGTGGTAGAAAGTGCACGCGGAGC
TTATGAAGAACGAATAGAGAACCATTTTTCTGCGTGTGGGGCTGAATTAAGTCTGTGCCC
GGAAAGCGGCAGATCGACATGCCATCTTGGCCGATATTCCTCGGCAGCATCTTAGGGATC
TAGTAACTTAAGATGCGCCTACTTATGACAGCGGGGTTTCCATTTTACTGGCCAAATCCC
AAACGTGTGGGTGTCCTCGTGACCACGCACTCAGCATCGGCCGCCGAGATATAAGGCCGT
CGTCATGCATCCAAGGTGCTCTTGCTCCTCGTACCTAACGCCATTCCCAAATCCGTGCAG
GTTGTGCCGAAAACGAAACTGAACCCCAGGCACATCCGCACTGGCTAGCTAGGCTCTTGA
GTAACGGCAGCGAAGCCTACCGAATCCGCGCAAACCAAGCGAGCTGCCGGATCCTCGTCC
CACCAAGCTAGCTACTCGTCATTGCAGAGCAGAGACGCCGCAAAAGGTAAAGGACGGGGG
GGG