Contig Data
morexGenes
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Map Locations of contig_45614 (6660 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_45614

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61543 1 863 bp MLOC_61543.1 Available Available LOC_Os12g23770.1, FRAME:+1, EVALUE:3e-34, 13112.m02415 protein retrotransposon protein, putative, LINE subclass
MLOC_61544 2 1163 bp MLOC_61544.2 Available Available LOC_Os05g33520.1, FRAME:+3, EVALUE:3e-92, 13105.m03467 protein expressed protein





CDS Structure of MLOC_61543






CDS Structure of MLOC_61544






Contig Sequence (6660 bp)

>contig_45614 6660 assembly3_WGSMorex_rbca.fasta
CGAGGCGTGCTCGCATGGTTGCTCACGTTCTCACCGGCCTGCGCTGGATCGCCGACATCC
AGGGCGCGCTTGAGCCCGCTACCACGATGGAGTATGTGGACCCCTGTCATCGCCTCCATA
TGGTTGTGCTTTCCCCCTAGCCCGACTCGATTTGCTGGTGCTAGACCGAGAATGGTGCCT
ATTCAGCCTCCTCTTGCTACAACACACTCTTTCATGGCTCCACTACTTCGGAGTTCTGGT
GTCTAGCCTGGCAGACCGGATCCCCCACTTCGATACAATTCTTCATCTGGCTCGCCTCCT
TGAACCGATGCTGGTCCGCGGATCGTCTTGCCAGACACGGATTATCGCATGAACTGGCAT
GCGCGCTCTGCTCCCAGGAGCCCGAGACGCTTCACCACATCCTTGTTGGCTGCGTCTTTG
CGCGCATCACTTGGCAAGCAATTCTGCCCTGGTGCTCTCCCATGATGGCCATTCCGGATG
GCTCGGTGCACTACTTTGACTAGCTCTCGTCAGCTATGCTAGCTGCACCGGCATCATGAC
GACGAGGACTGGCCATCGTTGCCTCGCTCACATCATGGTCCCTCTGGCGGCATCTAAATG
TCGTCATCTTCGACCAGATCACCCCCTCTACCACTGCTCTGATCATCGGAATCAAAGACG
AAGCTCGCTCCTCAGCCACACCTGGAGTTCGAGGAACGACTACATGCATTCGTGTAACCT
GAATATCTAGTTTTGGGGGCTAAGCAACCCCCGTCTATCTTCTGCTCGATTAGGTGTCTG
GGCCTCGCCATTCGTGTGTACAAGGCCTCAACGCCACCCTATACTCTATTCCTTACTTCC
CTATCAATGCAATGATATGCTTAGGCGTATTCGTGAAAAACAAAGACTTGATTGTCAAAA
GTATAAAAAAAAATCAACGACCGGAATGGCGACGGCGGGCGAGATAGAAGTCTGTAGTGA
CGCAACTTAGCTGGTGGTGGCCGGAGTGGAGCTCGGGCATGCACGCTCGAGCAGTAGCCA
TGGCTACGAGCAGGCGTTGAAAGGTAGAGAACACATAGAAAAAGTATAAAGGCACGTGTT
GGACATAAAAGGCGATGGACACAGTGTGTATGATCCACCGACTAAGCCATATCGTTTTTC
AACATGGAAGCTGCTAGACGTCAATCAGTGGATCGATACTAAACATCAGTCACTCGAATG
GGCATTTGATGTACGCGTTCGTAACCGTCTAATCTACCTGCTGGCACGTGGCTCGATAGC
CTCCCCTCACCAATTAATTCTTAAAGCGTCGGTCTAGTTGTTGAAACATCTGTCACCAAG
ATAACCGTCGGATCTCCGAACGCAGCTGTCCGCAACCGTCCGGTCTAACTCAACCAATAA
ACAAGATGTCGTAATTTTTGCAGTATGGGTCAGAAGATGTCGTAATTTTTGCAACATGGG
TCCGAATATATTGTAATTTTCGTAACATGTCGTAATTTTTGTAACATAAGTTTCTGCAAC
ACGGTCATTGTTTCTTCAAGGCGGTCGTTATTTTAAAAATTATTTCTGCAACGCGGCCGT
TGTTCAGGAATGCAGCTGTAACTAGTTTGTTGTTTAGAAATTAATGTGTCATGAAAAAAA
TTCAAATGCGCTCGTCCTTCCACCGAGACGAGCCACACGATGGAACGACCATGGAGACGG
AGGACGGACGCGGCGATCGGCCTAATCTTTTCCCAATTGAAAAGCAATTACTACAAGTTT
TTGGCCTAAAAACCGTTGTGAAAAGCATGAAGGCATGAAGCCAACGGGTGGAAGTACCAC
GGTGTTCGTGGGGCGACCACGGCCAGAAGGTGAACGCGGGAGGACCTTCCGTTCCCCATC
CCTTCGCCACCCCTGCCCTCCTTCCCCCGAAAAAAAAAAAGAATCTCAACAACGATGAAT
CCTTTGTTAAATAATGCGCTCAGCGGCGGCTGCGCGTTCCCGTCGGTGGCATCCGCGCTG
CGGTTGCCGGCGGCCTCCCTCCGTACAAGCGCGGGCCGGAGCAGGACCAGGAGGCGGCGG
ACCAGTTTAGCGCGCGCAGCCTCGGATGGCTCTGACGGCGCTGTCGCCGGCGCTGTAACG
GAAGGGGACGCAGGCGTCGGCGCCGGCGGGCAGCGCGGTGCCTCGGCCGAGCCGGCGGCG
GAGAAGCAGCAGCCCGTCGTCGATCCTAGGATCGAGAAGGAGCTCAAGAAGGTTTGATTT
GCTAAAGCCCTGAACCCATTTGCAGTTCTGCCGAGATAAATTGTCAAGCTTTATCTGATA
TACGGTTGGGGTCCTCCTTGAGCAGGCAGTTCAGAAGACCGCGGCGACGTTTGCGCCGAG
GGCGTCCACGAAAAGCAAGAACCCCGCTGTGCCCGGTTCCACTCTGTACACCATCTTTGA
GGTCCAGGCGTACGCGTCCATGCTTGCCGGCGGCGCCCTTTCCTTCAACCTCGTCTTCCC
CTCCAGCGAGCCGGACATTTGGAGGCTCATGGGGATGTGGTCTATCTGGATGTTCAGTAA
GTAAGACATGTGTTTTCCAGCAAGTTTGTTCCTTGTCGAGGATGATTTTTGGTGCTTATT
TCTTGATGAAGTGAATATGTCGTGTTTACTGTTTACTGCTGTTCAATTGCTAAGAATTTT
GTTGCTACCGTTGGCAGCAATGTCCTTTAAGAACCATGTCTAGGTTATGATCTGTTCTTG
GCATGCTTTGCAAATAGGAACATGATGTATCTCGTACATCTTTGTTGGGAATGGCTAGGG
GACAGCACACTGAATTTAGAATCTGCTTCCGCCGCCCGGCTCGCTCCCGGGACCCCCCCC
CCCCCCCCACCCCACCCTAAGATAGATAGCGGGGTCTTCTCCGAAAAGCTCCTTCTTCCC
TCCGGCGAGCTCCTTCCTTCCCTCCGACTGTTCCTTCCTTCACGTGAAAATCGACAGACC
CAAATACTTACATATAGCTATTGTGGTCTTTGTTTCGTGCGAAGGATGTATCTTGTATTC
TTGTATATGTAGTTCACTAGAAATTTATAAATGGTTATTAACCAGCAGAATGAACACAGG
CAGGCAGCCTTGAGCTGATGTTGCAACAAATTGAAACGATATGTCTAAATTATTGAGAAT
ATGTTTTTTTTGATTCAGTACTAATGCACCGAAACCTTTTCTGCAACATAGTAACCGATC
ATATCATACTTCTGTAGCTATACCTTCTCTGCGGGCCCGTGACTGCTCAAACAAGGAGAA
AGAGGCTCTGAATTATTTGTTCATCCTGGTCCCTTTGATCAACGTGATCATCCCATTCTT
CGTGAAATCATTTGCGGTTGTCTGGTCAGCAGATACGGTCGCCTTTTTCCTGATGTATGC
ATGGAAGGTATATGTTTAATGTTGTCTTCTCTTTCAGGACTTGCTCTTGTATATATTCGC
TAAATAAGTTGTGCATTGCTACGGATGAAAAAACTAGATTATCCCAAGCCCTCATGTATA
TATCTAACAGATTTTTCTCTACACAGCTTGGATGGCTGCAAAAGTCCGAGTGAAGACTAT
CCTCATTGAGGAGCATTCTACCTGCAACTTTTGCTGGTTTATTTTCTAGGGCACAGGTTG
ATCGAATTATTTCAAGATGTAGCGTCTGTATAGCCCTTTAAAGTTTTGTGTATACCCATG
AAGTACGGAGAAATGTGATTTTGACATCAGATTGTTAAATAGATGTAACTGAGGGCAAAC
TTTCATTATTAACTAGGAACCATGCAGCTTTGTTAGATAATCGTTAAATATGTGTGTGCT
TATTCTAAAAATTGTACCTAACTATTTGTGTATACCCCAGGAGCAGCAACGATCAAAGCA
CATTTATGGTTCAAGTGACTTGATGTGCATATTTGCATCAAAGAGGGAAATGTCCCTTGA
TTATGTTGGGTTTTTTGGGGGCAACCCACCTGAACCATGTCAATTATAATTGCAAGAAAT
TAGGCAAAAGCTGCATGTGCAGAAAAGAAGTAAATGTGCTTTGATAAATACGTAGTATTA
TGTTGCTAATTCTTCCTGCTCATTTTGTTGGGAAACATCGAAACAATGTAAGCATGCTTA
GAATAAGACAGTTCTTGGGACAAGGAGTTTTGCAACTTTTATTGAGGTAGGCGCTAAAAA
CTGCATTTTAATGAATCTAATCAGCATCCGCTGTGCTACATATCTGTTCATGTGGAACAG
TGAACCATGCGATGGCATTCCATTCTTTTTGTAGTACTATTAGCTGTTGATCAGATATTG
TCAATTCCTGCTGTAGGATGGTTTGGATCCGGATTCCTATTTGTGATGCTTTCTTTTGTA
CCATGAGTTGATGAATGATGCTCCACTTCTGTGTGCATCAATCGATGCAAAGCCTGGGGT
TATTACCCTCTTTTTGAAAAGGAAAAACCTTGTGTGTGTGCTTCAACTGAGGTTGACCTG
TTGAATCCGAGGCAGCGTCCTCGGCCCTAGTGGGCGGCATTGCCTTGCGGAGGGTGGCCA
ATGGATAACGGGGGCTAGCGGTATCGATCTAGTTCTTCATGGTCTCTGGTCACCGGATCC
GGAGTGGCGTGTCTACAATGGTGGTTAGGGTTCCGGGAAAAATCCCTAGCTCATGGACGG
CCACGGCGATGGTGACTTTCGTGGATGTTGGTCCCCTTCTTGGAGGTGTTGTCGAGGACC
CCTTCCCCTCTTCATCCCTTCTTCCCGAGTGAAACCCTAGTCATTTCTGGATTTGGCAGC
TGCAACACCCTAACATTGTCCCCTTCTTGGAGGCACCGAGTGGGACAATAGGTTGCGAGT
GTGCCAGGTTGTCGGTGGCGGGTATTCGACGGTGTCTTGGGACTTTGCTCTGCCGGTGCC
CCTCCTTCGCTATCGCTCCTTCTGGTGCTCCACAATGATTTCCTACATCAGCCTAAGTGG
TTTTCCATGGATGGCGGCGGTGTTGACCTTATGGCGAACTCAACATGGTTAGGCGGTCAT
GCTTGGTTTCTGCTCCTTGGTGACCATGTCGTTTGCTTCAGCTCGAGCTCTTGGGTGAGC
GAATCTGACTGCTCGCGGTGCGGCGCCTTTCAAGCCAGGGCGAGAGGGCAGAAGGCCCTC
TTCAGCGGCGGAGACGGAAGTCAGCACGATTTGGTCCAGCTACCCCATTGTAGACAACGG
TGTGCTCCCACCTCCTTTGTTATGCTCATTCCGTGTTCCTCACTCTTGTCCGCTCCATTG
GTGTGGCAACTTGGTGGATGAGGACCCTGACGAACAAGTTGCGCTTCTTGTTTCATTTTT
GGTTTTCTTGTTTGAGTGTCTTGTAAGCTGATCATGCAACGTCATGTATCCTGTATCTTT
CGCCGTTTCCTGTTTCTCAAGGCGTCATTTATTTAACGCCGGCCCTAGGCCTTCTTTCTA
AAAGAATACAGTTCATCTTGGTTTCCCGTTCATGTGACAGTATGAAGATTCACATATCCC
ACTGACGATGGATAGCAACAACCGTGGTTCAGCAGAATATTGTCGAAAGGAGCGTTACTT
TCAGTCCGGAGTCAATGATTTCAGAGTTTCCTGATTTGTGTACTACACTACAAGCCTTGC
AACTGACTTATGTTTCTCTTATCTGTTCTCTGGATAGAATGGTGCCAAGTTACATTTGTT
CGTTGGTACTTTATACTAGCTCTAGTACAAAGTTGTATTTGTTGGAAGTTGTAATCTACG
GTATTGTATAAACCGTATAGAGATAACTTAGACTTAGAGATAAGTTAGTTCAAACCATAT
ATGCCGAAGAGATATGACTTGGAGATCAATCCTTCGGCATAACAAACTTGTATATTTTGT
GCTATATATTAACACGCATCCCGTCCCTGCTANNNATACGGTTAATCTAGCTTTTCCACA
TGGTATTCAGAGCCACCTCTTCCTATCGCATCTAAACCATGTCCAGCTCCTCCTCCACTG
TCGCAATGGCCGCACCCTCCCTAGCATCCCTCGGCCACACCATCTCTGAGAAGTTGACTC
GAGAGAACTTCCTGGTGAGGCGCGCGCAAGTCCTGCCGCACGTCAAAGCAGTCGGCATGA
TGGGCTACCTGGATGGCTCGATCCAGGAACCACCGGCTGTGCTCATCGTGGAGAAGGAGG
TCTCCGGGAAGAAGGAAGCAACGGAGTCTCCAAACCCTGACCATGTGATATGGGTGACGC
AAGATCAACAGGTCCTTACCTTCCTGATCACCACGTCCGCCGGCATCTGGAAAGCCTTGC
TGCAGAGTTTTGCCTCGCAGTCTAGGGCTAGGGTGATCCAGCTTCGCTCGGCCATCGAGC
ACACGCGCAAGGGAGATCTGACAGCCGCCGCATACTACACCAAGATGGTGAGCATCGCCG
ACGAGCTAGCTGCTGTCGGCAAGCCTCTGGACGAGGATGATGTGGTGTCCCACATCCTGC
AAGGTCTCCTTCATGAGCCCGACTACAATGGGTTTGTGTCGGCGATCTCCACACGTACTG
CAACGGATCAGCCGATTGGCCTTGGTGAGCTCTTCTCCCTGCTACTCGCCGCTAAATCCT
GCATAGCAGCACAACACGCTTCTTTCCCATCCAATCACTCTGCAAATCATGCCTCCCGCG
GTGGTGGCCGCGGTGGCCGCGGCAACCCTGGTGGGAATAACGGTGGCGGCGGTCCCCGGG