Contig Data
morexGenes
Links



Map Locations of contig_45557 (5575 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_45557

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61480 1 487 bp MLOC_61480.1 Available Available LOC_Os11g32080.1, FRAME:-3, EVALUE:4e-29, 13111.m03118 protein conserved hypothetical protein
MLOC_61481 1 287 bp None Available Available None





CDS Structure of MLOC_61480






CDS Structure of MLOC_61481






Contig Sequence (5575 bp)

>contig_45557 5575 assembly3_WGSMorex_rbca.fasta
ATACTTGAGAATATTATTTCGCTTCTTCTTTGGCGAACCAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAACTGTTGCGATCCCATACGCTTCTGGGTCATCAGTCTTCTTCTTCGGG
CCAATAATCGGTCATCTCTTCGTCTGGCTCCATGTCGTTATTTCCTGCCCCGTCGACATC
CTCATCATCAGCATCATCTTCACTTATCCATCGAGTATGGCCATACATGAAACCATCCAT
GAGCACATGCGCCTTGTATTTACCATCCTTAAAGGAGTCCAGCCTGGCTCCTCCTTTGCA
TTTTCGACACGGACATAAAACATCATTTGGTCTTTTTTCATACATGTCGTCCACCGCGGA
TTACGAGTATCTTTCCAGCATCCTTCCATTGACCTTCATGATCACCTGCGCGGAGCAAAA
GAATTATAACCACGTATGCATGCATGAATCAAATTCATACAAAAATTCAGCATGACCTTC
CCTAAACATAGGACATATTGAGTTTGCCCAAAATTCGCCAAAACGGAATTGAATCGACAT
TTCGTCAAAACATAGGCAACTCATGTCACCCACATTTCAACAAATACATAATATAGGCAA
CTCACATGCCACACAATTCAGTATATTCATATCACGCATATATAGTTTCGGTCCTATCGC
ATGCACACATATTTCATGTTGCACAACTTATTTTTCCTCACCTATGTGTCGAGAAGGATA
TCCTCCCCCTTCTTATTTAGCTAGTAGCTCTAGATAGTGAGGTACCTACATATAACTCTA
ACTAGCTAGTGAGAGAGAGAGAGAGCTAGTGGACATGGGTGGATGGCAAAATAAAGAGAT
TAAGGAGGGAGGCCATTAATTAATGAAGGTGGGTGGATGGGGCAAATAAAGAAAGAGGGA
GGAGGGAGGGCATTAATGGAGGGGTGGTGGAGGGGCAAAGAAGAGAAGGGGGAGGGGGCA
TTGAAAGGAAAAAACCAACAAGGATGTGCAAGAGGAGGGGGAGAAAGAAAGGGGGGGAGA
AGAGGGGGGATATTTTCGCTGACCACCAACGCGTGCTAATAGTCACCAACCAAAATATCT
ACTGCTAAAAGTGCCCACCAAGTTTACACACAAAAGAAATAGCAGTAGCGCTTTGGCAAG
ACCACGCGCTACAGATCTGGGGTTAACAGTAGCATTGGGTTGACAACCGACGCTGCTAAT
ATCTCTTGACATGGCGTTACCATTAGCGTGTCCAGAAAAAACAAACACTGTTGCTAAGTG
TTAACACGCGCTACTGGTACTTACCAGTAGCGTTGGGACCCAAAACAGGCGCTACTCGTA
AAGTTCTATGTGTAAACATTTTTTAATAGTGAAAGAACTCTAAATCCTACCGATAATATC
AAGGAGAACATTCCGTATTTCATTTTAATTCACTGCTTGAGAAACAAAGACTAATTATAA
TTTTTTAGGAAATGATAGGTAAGATATCACAAATTACCACATCTAAATTTGATACGCAAG
GCGCTACCAAGCAAGTTTAGATCTAAATTTTTGTGTCATATGGTACATTAATTGGGGTTG
CGATATACATATATGTGATGTTTTTGTCTAGGAATTTTCACAACTTTAATTAGGCGGACA
AATTTCCGTTTTGAAGCAGCCGATAAATTCTCCAGTAGTATAAGATATTTCCGCCCTCGA
ATTTCGGCAAAAAGCATCAATTCTCAAACCAACGTTTCATGCATCATGCATGTGCGGATT
TAATTAAAGACGTATATATATGATCAATCAACCGACACAAACTTATTCATCGTACACAAA
ACTAATCCTCCCAATCAAGAGCATGCGATGCCGGAGGAGAAGGGCGCGAGGCTGAACTTG
GTGGCCGACGCGTAGTTGAACTTGATCTTGTAGCCGTAGTACACCGGGGAGGCGTTGTTG
AGGGTGCCGAGCTTGCCGTCGGCGTCAAGCCGGAAGAGCTGGGGGTCCACGGGCTCGGAG
GACTTGAACCCAGGGGCAAGCAGCTTGACGTCCGTCTGTGTGCAGATGCACTTGTTCTCC
ACCTCCACGGCGTACTCCGGGTTCCCTCCGGCGTTCTTCCCCGTCGCCGTCTGGGTCACG
TGAAGGTCCGACAGGGTGCACTTCGCACTGCCTAGACCACCAGAAAAGAAACAGGAGTTG
ATCAAAATCAGCATGAGGTTTGTCCGATTTGGATCAAGCCAGGCAGCGAACATGAATGAA
TGAGTGAGTACCTCTGTTGCAGAGGGAGAAGAGCATCAGCATGGCGAAGACCTTCATCAC
CTTGGCCTCCATTTTTTTCCCTCCTACTTTTGCTGTGCGTGTGAGTTGTGCTTGCTGTAA
TGCTATTCTGCGTCTTCTCTGCCGGCTATTTGTAGGCCTAGATGGAGCAGTTTTATGGTG
CGGTTGATTACACCGTATTTACCTCTGTATCTGTATATAAAGTTTTTGATTGTTATTACG
ATTCCACAATTAAGGAACGATATATGCCATGCCAAGGATACGTTGGAAACCTGTGATTTC
AGTATGTTTATTTGCCGATTGGTTCCCATACAATAGTTTCGAAAGATCAGTTACTATGAT
TTATTACTATTCCACAGCGCTCCTAATAACGCATCCGTATCACACTTGATTCTCCTAGAT
CTGGTCCGTTTATCTATCCGATTCTAGGGATCTTGTCAGGGCATCTTCAATGGTTGTAAG
ATAGTTGTTGGTAATTTTGACACATAAGATTTTTGATGATGTGTCAAGCAATAAATGAGG
AAAGAGAGGAATGTTGTATGTAAATTAACCAACACCTTTGCACAAGCTCCAATGTAGAAT
GAGAGAGCACCTTATTTATTACCTTACATCTTATTGAGCAAACTAGATACTACCCATTGG
AGTAGTTGTATGTTAAGGTGTTGGTTGATGACATGGCATATTTTACCAACAAGCTAACCA
ACATACTATTGGAGATGCCCTCACGCATGTGATGCCCTCGTTTCTACCAAAAGGAGAAGA
GGAACGATAAACAGAGCCGGCAGGAAGAACTCTTCATCTTTTTCTTTTTTTTCTGCGAGA
ACGTATATATATAATTAATGCCCATATCTCCTTCTCTCTCTCTTCTCAAATTGTCTTGAT
TTGTGTAATTTGCAATATATGATTACGAATGTAATTTGCAAATATTCTTGTTACATTTGA
ATTTTACATGCCTTGCAAGCGAGTGTTTGACAAAAAACTATCACTTTGGGGGTATGCGTC
CCACATAACTACCACTTTTTAAAAAGTGATCAAAAGCTACCAACATTTCTTACTTTTGTT
ACTAAAAACTACCACTTTTAGATAATGAACCTTTTGTATAATGTCCAGTTTAGACGATTT
ATACAAGTTTATTACATGAGGGGCCCATCTGTCAGGGCTGACATGGTGGTAAAGTCAACT
CCATTTATTTTGACCATTCAGTTGATAGTTATTACAGCCTTGGTCCCAGTTCTGTTACAA
CATTCACTAGTAGAAAATAGGGCTTTGGTCCAGGCAAGATAAAAGATTTAATCTCAGTTC
TGTTACGAACCGGAACCAATGGGTGCATCAGTCCCGGTTCATGAAGCCACGGCGCCGGTC
GGGCCAGGGTCCCGGTTCGTTTGACCCCTTTGGTCCCGGTTCCGGACACGAATCGGGACC
AATGGTCCTCGCTTCTGACGCAGCACCTTTAGTCTTAGTTGGTCGCTGGAACCGAGACTT
AAGGTCAGTCTTCTGTCCCGGTTCTTGCCACCAACCGGGACCAAAGAGATGCCTATATAC
CCTTGCCCCTGCCCACCCGTCTCCTTTGTTTTTTGGGCGTGTGGTAGGTGTGCATTCCCT
GCTTTGTTCACTGTTCTATTGTTCACTGTTCTATGCTTCACTGTTCTATGCATACTGTTC
TATGCATGCACATGAGGTGTTCGATGAAATCCCCGTCCCGTCCTCACCGTCGTTGATCGC
CCGCGTCGATCTCGTTTGTTATTAGATAGATACTTGTATAAATTTATTACTTTTATTATT
GTTTGCTATTATATAGTGTGATGGTTTTGGCATCCGCCCACGTCGGTCCTCGCCCGGCCT
ATGATTCAGACATGGTATATGTTGTATGTTATTTTATGAGAACTATATATGAACTTTATG
TTGTTCTTAGGCTCAAGCACACTACACAGTTCTATAAAATTCTACCGCTTGGTGACCCCG
TATGTCAATGAACACAAGAATATTATGCGCTCCAAACACCCGGAGCAGTGTGACAATTGG
ATTACATGTGAACACATCAAGACTTTCGGTAGTTGGTTGCAAACACGTCTCATGGTTGAC
AACACTGTTGAAGATGAACTGTACTCGTTGGTCAGGGGACCATCTTCGACTGTATTGACT
TACAAAGGGTACGAGATAAATGTGAATACATTTTTCACGATCGCCCAAAGTGCAACATAG
TTCTTTCAGGGAAAAGAGACATCGTGGGAGTGGAGGGCAAGACAGACATGTCTGAAGATT
ATGCAAAGTTTCAGGAAATTCCTCCCTACAAAGCGAAGGCGGACCCAAGCACCTTGTTAA
GCAATGAAGATTATCCATGGTTACGGTGCAATAAGCAAGGGACACATGCGAAGAAAAAAC
GAAGACTTTCTCTCTGCACTTATTCAGATGATGGCTCTGATGATGGATTTGATTACGCAA
AGAAATGAAATCCCTTTGTAGTAGATGATTTTTCGTCCGAAACCTTGATACTTCGAAAGA
GATTGTCCATTTTGTATACGAAGTGCATCCAGTTTTTGCAGTAACCCTCTAAACTTTTTA
GGACATTCTATGTGGGTGAAATGATGATACCATGCCAACTTTAAACCTTTTCAGAGTTCA
TTTGTACTACTTTTCAGTTCCAGGGTCATTTAGCTAAAAAATCAGTAAATGCACGAAAAA
TACCAAATGAAACGAGAAATGGTTGAAAATTGATGATGTGGTTTTGAATGGTGCATGTTT
AATGCACAAAAAGTTTGGAGTTCAAATAAGTATAAAAAATGATATCTCTTTTGTAACAGA
TGAGTTTTCGTCTGAACCGTGATACTTCGAAAGAGATTGTCCATTTTGTACACAAAGTGC
ATTAAGTCTTTGCCGTAACCCTCTCAACTTTTTATCACATGCTATGTGGATGAAAAGATG
ATACCATGCCAACTTTCAACCTTTTAAGAGTTTATTTATAATGTTTCTCAATTTTACAGT
GATTTAGCTAAAAAAATCAGTGTTTTGATGAGTTTTCATTTATAAGTAGAAAATACATGC
ATGACCAGTTAGAATAGAAAGGACAGCATCAACAAGTGTTCAATCATTTGTATGAAGAGT
CAGAAGACCGACATAACGGAGTGTGTTCAATCACAAGCTCGTTGTGGATCGTCCATATGG
TCCAGACTAGGGCCTCAACTCCGAGCAACCTAACGCTACAGGCGCCCGCGGGGCCGTCCT
GGAATTCTTGGAAGACGTACGGGAAGCTGGAGTGCCACCATCCACCTTCCAAAACTTCCC
GGAAGCAGGACCAAAGGAACTACGCGGACGAATTCTTGGAAGACGTACGGGAAGC