| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_45435
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_61370 |
1 |
400 bp |
None |
Available |
Available |
None |
| MLOC_61372 |
1 |
1263 bp |
AK371534 |
Not available |
Available |
None |
| MLOC_61368 |
1 |
933 bp |
MLOC_61368.1 |
Available |
Available |
LOC_Os03g29440.1, FRAME:+1, EVALUE:2e-26, 13103.m03386 protein retrotransposon protein, putative, unclassified |
| MLOC_61369 |
1 |
1045 bp |
MLOC_61369.1 |
Available |
Available |
LOC_Os03g22090.1, FRAME:+3, EVALUE:8e-22, 13103.m02655 protein retrotransposon protein, putative, unclassified |
| MLOC_61367 |
1 |
1037 bp |
MLOC_61367.1 |
Available |
Available |
None |
| MLOC_61371 |
1 |
801 bp |
MLOC_61371.1 |
Available |
Available |
None |
CDS Structure of MLOC_61370
CDS Structure of MLOC_61372
CDS Structure of MLOC_61368
CDS Structure of MLOC_61369
CDS Structure of MLOC_61367
CDS Structure of MLOC_61371
Contig Sequence (6844 bp)
>contig_45435 6844 assembly3_WGSMorex_rbca.fasta
CGCCGCCGACCCCCGCCCGCCGGGCGGGGGCGGCGCTTCTTGTCGCCCGCGGCGGAGCGC
GGCGCGGCCCCGCTCCGCTCCCGGGAGGGCGAGCAGAGGGAGCGGCCGCCGCAGGAGCCG
AAGGTCTTGAGCGCCTCGCAGATGTTGACCGGGATCTGGTAGACCCAGCCCTGGTTCTTG
GCACCGGGGTGGAGGCCGCCGTCCCGGTCGTCCACCCCGCGGCGGAAGCTGGCCTCGGAC
CCGGACAGGCCGCCGCGCCTGGACCGCGAGCGCAGCGCGGCCGCGGAGCCGTGCTTGGGC
TTGCGCTTGCCGCCCTTGACCCGGACCTGGCCGATGCAGGTGACCTTGGGCGAGGACGGC
TCGGCGGGCTCCATCCCGCCCCGCCCGCGCCGGCCCCCCGACGCCGTGCCCGGCGGGAAC
ATGGGCGACTGGCCGCCCTTGAGGCTCCCGCTGTTCCTCAGCCTCCTGCTCAGCGACGGG
CGCAGCAGCGCTGCCGGTGCCGCTTCCGCACCACCAGCACCAGAGCCGTTCCCTCCTGCT
GCTCCGGCGGTTCCGGTGCGTCCGGGGCTGAATGCCTTGGAGGAGGCGGAGGGGCGGAGG
CCGGAGGCGGAGGGGCGGGAGGTGAAGCAGATGAAGAGCTCCGTGCCGCCGCCGCCGCCG
CCGCCAGCGCGGTCCAAGTGCTTCTTGCGGCGCATCAGGCGCGCGATGGGACGGGCTCAA
GCAGAGATGCGCGAGCGAGCTGCCTGCTGAGGAGGCCCTGTCACCTGTGACCTCCCCTTG
TTTTTTTCCTCCCTCTCCTCAGGCTCAGTCCTCACCTCGAATTTATTATTCCTACCATTG
TTTATGCTGAGGAGTGAGGAGCGAGGCTGGCTGGGGTGGTGAGGTCTCGTGCGTGCACAA
GACAGTGGCGAGCTTGGAAATAAGTGCAGTAGGGTTTGGGAGTGAGCTCTGCACTTGCAC
TTGCACTGTCGTTAACCATGGTGCTTAGCTGCAGCGGCGGCAATCATCATGGCTGTAATC
TAATCTGCTTGACGATGAGGAGGAGGATGGAGTAATGGAGATCGGAGAGGGGCGGGGACA
GGGGTGTGTAGGGTTTGCTCGAGCTGGCGGTAGGTGGAGTGGAGGTGGGAGTGGAGGGGT
CCATCGTTACGGCTGTTCCGGCGAGCGGTGGCTGGCTGGCCCGGCGCGCATGTGCAACGG
ACCAGGGTATGTACTACTCTTCATGTGTGTGTGTGTGTGTGTGTATCGGCAAAGACCAAA
GACACGTCTAGTGCTCGCGAGTTTTAAGAAGACACATGAACGGTGGTTGGGACGATGGCA
TGTTCATCTCTCCTTGTCATGTCAATCTTTTATTTTCTTTATTGGAGGGCCTTCGATTTG
ATTTGATTTGATTTGATTTGTACGATTTTGAAAGCATAAGGACATTATGGAAGAAAAAAA
ACAGGAATGCGATCGAACTGCATGTGCGAGGCCAAGCATTGCAAGAACGCGGGAATTCAC
ATCATTGTGTGTTTGATTCGCGGGGAACGAGAAAAGACGGGAACATCAGATCGGTGTGTG
GCTTGTATTATGATCCTTACGATCGAAAATTACGTCGAAAATTATGCTTCTTACGGTCTT
TGCCCTGTTCTATGTGCATGGAGATGCAAGAAAGATCCACTCAAACCTCTCAACGCGGAA
GGCATTGAGCATCTCATGGAGATAAGCCCTAGGTACGCAAGGTTTAATTGAGAAAGCATG
TCTTATACATTATCTTGGTTGGACAGATCTAGAGAAGTTGTTGTACTAAATCACAGCCCA
CTCACCCGTCTTGGCACAAGCTTCATCGCCAAAGCTTGTTGCGGTGGTCTATTGGTACTT
AGGGTGGAAGGGTGGTTACTCGTGATGTTCAGATGCATTCATCAGAAAAATATGTGATGA
CAATCAGACTGTTGTTCTCAAATTTCAGTTCTGGTGTAGTTCCTAATGCAAGAGTGAGGA
AGGAGATATGGACTGCAACAACAGGTGATTGCGTTAAAATAAATGTTGATGCTTCTTTCG
ATCCAGATTATTTGAGGGGAAGTACCGGTGTGGTCATTTGAAATAACAAAGGAAAGCTTA
TCACTTTGAGTAATGTATAGTTGGATATGGTTCAAGGTGTTGTTCTTTAGGTTGAAGCTT
TGGCTCTCAAGCATGGTTTGCTCTTAGTAAAAATCCATGGGTTGTAATGGAGTTGTAGTG
AGCTCAGACAGTCTGGAATTAATAGAAACTATGAAGAATTGGAAGCCACCTAAGGCTATT
GTTGCAGCAACCTTCCATGACTATTTTAACATGAAGCAAAAATTTATAAAGATTAACTAT
GAGCTTTTCATTGGGGAAACAAATTATGTAGCTCATGAACTAGCCCAGTTGGCTTGATGA
TTTTCCCCCCCCCCCCCTCTATTTATACCTCTCATGGTGAAGAGGATGCAAAGTTACTAT
CTACTGAATAAAGAAGTTTTTGAGGTAAAGAAAAGGTTTGAGTGGTTTGTAGAATTTCTT
TGTTTTTTCTATGGGGCTCAAATTATCAAACTAAAGGAAAATCTATTGCACTTTTCCTAT
GGACAATTCATTTGAATCAATAATTTTATCATAGGAAAAAACTATGTCTTTGTATGAATG
ATAGAAGCCCTAGAAAATTCACATGCCCAGCTTAGTGGACTCTGAGAAGTAAGAAAATAT
TATCTGGCGTGAGTCATGTACCGTCAAGTAATTTTCGAAAACTAGAGGATGGTGAGGAGG
TAGCAAATATCATGAATGTGGTGACAATGAGTTTCGAAGAGAAGTATTTGGGCTTGCCGG
TTCCAGAAGGGCGCATGGTTAAGGGTAAATTCCAATCAGCCAACGATAAAAGCGAGGAAA
AGAATGAATGGTCGGACAAAAAAATATTCATCTAGTGGGGTGCTAAGAAGACTCTCGTTA
AATCATGGTTCAAGCGATCCCCACTTTTGCAATCAATGTTTTAAGGTTTTCAGCAACCCT
TTGTGAGGAGCTCATGCACATGGCCAGAGACTTTTTGGTGGGACGATGATAATGATCACC
GACATATTCACTCTTGAGTTGCGAAAAACTCACACAACGGAAAAACTAGGGACATATGGG
TTTCAAGGACGACTCTACTTGCTAGGCAAGCTTGGCGACTTATTGCATATCCTGACAGTT
TGTGTGCAAGAGTACTTAAGGCAAAATACTACCATGGGATGATCTAATTGACTTGGCGTT
TACTCACAATCACAATGCATCGCCGGGGTGGCAGAGTATTATGCATGGGTTGGAACTCCT
CAAGAAAGCATGTGCCTAGCGATTCTCCAACACAAAAGGTGTTTGCATCTAGAGAGACAG
TTGGAACCCTAGGGGGAATCTAAAAAATATTATAAATCTGACAAACCCCCAAACCCGTTG
TGTCGTGGTTTTGTCGGGGCAGGTGTCCTCGTGAAAGGACTAAATCTGGGAGCCATTGCA
ACTACGTGGTTGCTTGGATGGGGTTGATCTGGAACGAAAGACATGCATTTATCCAGGTTC
GGTTCCTTTGATGGAGGTAAAAATCTACGTCCTGCTTAAATGTTATTGATGGTGATGATC
TCAATTACAAGGGTGTGGGATCGCTAACCTAGTTCTCGAGGGTTTCTTGCCTTGTTATTT
TGCCCCAGGGGTCTCCCTTTATATGATAGGTCGAGCCCCTGGGATTACAAAGAAGTTTGG
GTCGTACTTGTCAACCCGTGTTCTAGTCTATTTCTTGTTCGTCTAGTCTCCTTTGTTAGG
AAACTCCTTATCTGGGCCTCTTCTACAAGTCGGCAACTCAAGCCCTTGTCATGAGTTGGC
CTGTAGGTGATAGCTTCTCTACATCTTCTTGGCCCGGGCCTGGTCTGGCTCACAGTACCC
TCAGTACCATGCTGGGTCATTCCTCTACCGAGTCATAACCGTGGGGAGTATCCCCAACAC
GTTGGGTAGCGGATCTCATTGACCAAGAGACTCATTCTTGGAAGGAGGATAATATCAGGC
ATATTTATACACAACATGACGCGAATGAGATTTTGAGTATTTTCTTTCTAAACTATGATG
AGGATGGTTATATTGCTTGGCAACCAGCGAATAATGGAATTTTCAGAGTGGCTAGCCATG
GATGAAAAGAAATCCGAAATGATTGGATCCAACCACAATATCTCAAGGGACCGTAGTATT
TGGAATACTATTTTGAAAACAAATGTTCCCCCAAAAGTGTCTATTTTTACTTGGAGACTG
GCCACTAAGTCCCTTTGTAGTTCAAACCAATAGATGTCGGTGCATCCCGGGCCTTACCCC
GATTTGTAATGTTTATGGTAGTGACAACGAAGCGGGTTTCCATGTTGCACATTCGTGTAT
GGTTGTGAGGCACTTTTGGCATGAGTTGAAGGACATGTGGAACCTCCCTCTTGAGCATGA
AATATACTACATAGTAAAGGATTGGGTCCTTGTCCAGTTAGATAAAGTAAGTGAAGACTT
AAGACAAAAAATGCTATTTTGGTGGCAAGTTTGGCACCAAAAAATGATGCGATATTCGCA
AAAGGTAAAGCAAAAATTTTACCATTATGCTGGGTTTATGCAAAACTAGCTTGTAAACCT
CCGCATGATTGTGAACATAAATTCTGAGACCGGTCGTAAAAGGAAAAGTCTTGTGGTTAA
ATTGCCAAGTTTGGAAGAACATGATAATACCAAGGAAAAGGGTAGGCAAAACCCCGATCT
CGGTTTGGCCTAGGTCAATGTTGATGGAAGTTTATTGGAGGAGAGTAGCACTAGAGCGTG
GGGAGCTGTGGTTCCACATCATGATGGGGGGAAATTTTATCTTCCTCGGACTATATTCCG
CGATGCAATGGAGCAGAATTTGTGGAAGCTACTACTTGTCTAGAAGGACTACGGAAGGTG
ATTGTCCGGTACAGTGCTACCTTTAGTTATTGAGATGGACATCAACTCGGTGGCAAACGC
ACTCGACCCCACATGTGTGGATCGACCGGAAATTGGAGTGATTGCAACAATTTCAAGTCA
TCAAGCAAGGAAACACAAAAGTTAAATTTTGTAAAATAGACAAAAGTGTCAATAGTTTAG
CCCATAATCTAGCCTAGTTTGAGCGTAGAGAGTTGCGTGGTGATGTTATGCAAATGAGAG
TACCAACCTGCATGTTGAATGTCACCTTGCAACATTGAAGAACCTTTTTTGCAGGGTAAG
ATTGTAAGAACTTTGTTTCCTCTTTTAATTAATACAACTCTCTATATTTTTTTGAAGTGT
TTTGCGAAAACTTGTTGGGTTTGTAGTCTTGGTGAAAATGTTGGGAGACCTGACTTGTTG
AATTCTAGTGACCGAGGTTGTTTTGCTCTATTTATTGAACAATAACTATGTAAGAGCATT
TATAGTCAGGCGTTCTAAAGCCACCTCAAACGCCCGTGGGATGGTTTGGTGAGTGCTTGA
TTATAAAAATGTGATCCAGACGGGCTCCTCAAACGGGCCTCAAACGCCTAGGCTAACGAG
CACCCTTCATATCCAATCAGAATCTAGAGCGAATATGTGAACGTTCGGGCGCGACCGGGC
ACGTCCGTCATGTCAAACTGGCCATGGGGTCCCATACGAAATCGCTTGGGAACCGGACGA
TCTCACGTCCCTCTTCTACGTTGCCGCATGGCGCCGCTTTGGCGAGCCGTGTACAACCCT
AGCCAAGTTATTTAAGTCGACCGCGTGCGTAGAAACCCTACCCATCCATACCCCCCTCAT
ATCCGCCGCTGTTGCCAGTTTCCGCTCACTGTCCGACACTTTTCGGTAGTAGCTATGCCC
CCACGCAACCGGTCAATTTATCGAATGCCGGAGCGTCGTGTGCAGCTCCTTGAGCAGTTC
CGTCTCCGGAGGCAGAGATGGAGCATGTCGCGGACGGTGTCTAGGTGCCCGCGGTTATGG
ATGAGGAGGAGGAGCCGAAGCCCTGCTACGCGCCCATGTACCCGACACCCTGCACGGACA
TTATGGACATCTCTGATAATGAAGTTTAGGCTAGCTTGATAGTACATAAAAACTTCTTTG
CATGGTTTGTATGAATTTAAGGGGTGAAATATAAACTATTCACATGCACAACACCAAATA
TGAGGTATGACTCGACAGTGCTCGCAGACACGTCGGGGCGCGTCCGCGGGTGTTTGACTC
ACCGGGTTTGTCAAGTGTAGCTGTAGATGCTGTAAACTCTCTTTTTAATTAACAATGAGG
TAAATCTTCTACTCTCTCCGTCTCATAATATAATATCATTTTTACTATAAAATATGTTGT
AGGGAGTATGTCGTTTCAAAAGAAAAAAGAAATCAAAACAAATTTGAAAGCTATTATGTT
TAGGTTGTCCAAAACGGCTAGATTTTCTTATAAGGCTCACAAGGCGTATGCCCTCTTTTG
GCCACATAGCCAAGGCGTCGCTTGCGGTTTGTCGACCGCCCCTGGCTTGCTGCTTGAAGT
TTAGGCTACACTATGGACATTATGGACATGTGATATCTGTCGCCATTTCGACAGCAAAGG
GAGCACATGTGGAAGTGGAAATGGTACCCGTAGCAGATTGATTTCTAAAATAAAATCAGC
CAGATTTGCGTACTAATAAATCCTGGATTCTGAATCCGTACGAGAAACGGCCTCGCTGTT
TTGTTTCGGGGTGGCTGTTGCTTCAAGACGTGACACCGACCCGACCGGTGGTGGTCCTAA
TTAACTAGCCTCAGTACTGCTGCTGCGTATGCCACCCCGTCATCTAGCCTTGTCAAAGCT
GATGAGGGAGCGATGGGGATCGTGCATTGCTCCTTGTCAAAGCTGCTGATGAGGGAGCGA
TGGG
