morexGenes - Barley RNA-seq Database

Contig contig_45396
Source Contig contig_45396
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45396 (7894 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_45396

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61336	1	246 bp	MLOC_61336.1	Available	Available	None
MLOC_61337	1	420 bp	None	Available	Available	None
CDS Structure of MLOC_61336

CDS Structure of MLOC_61337

Contig Sequence (7894 bp)

>contig_45396 7894 assembly3_WGSMorex_rbca.fasta
CGTGAGTCGGCACTAGATCGGAATCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTAGCAATGCTTCCGCCTAGCGATCTTCAAAGGNNNNAAGATGCACTCC
CCCCTCTCTCGTTGTTGGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG
AATTTATGCTACGTTACCCGCACAGCTAGTACCAATCCCTTCAAGCCTAGCCCGTCCAGC
CTGCCTAGATTATTTTGTGCAACACGGTTGTACTTATATTGCCCAAACCTCTCCCCCCCC
CACACACACACACCACTTCAATTTTCCAACTTCTCGTTGTCATACATGCCGAATAATACA
TGGGTGAAGCACACAAACCGCCTAGGCTCATCATAATCATGATGCGTACTATCGTTGGCA
TACGCGCCGAGTGAAAATACGGTGCTCCAGCACGCGAGCCGACAAAGGCGGGTAAAAATT
CCTGGTCAAGCACGCCCAATACAAAAGGCGCTTATTGACCACGATGCCTCCCCTCGTTCG
TATACCCGCCAACCGTCCAACCATCTATAAAAATCACCTACTCTATAAATACTACACATT
CGTCCTCAACCTTGTCCTCCACATCTGTCAACAGAAAAAGAACCCTTTTCTTGTTAGTCA
TTCCTTGCTTCTACCATGGCTCATGGGGGGAGCTCAAGTTCGAGAAATAACTAGAGACGA
TTAACCATGGCAGCAAAAGCAACAGAGAAGGCATGTCACATTGCAACGGCCTCATGCTCA
GGCGAGGTCTCTCGGAAGCGCATTCATAGTGGGGGAGAACGGTCTTTTGCCCACGACAAC
ATGTCGGCTCAAGTACATAAGCTGAAGAAGGATATCACGGGTTGGGTGAAGCTGCACCAG
GGGAGCAATGCCTCGCTAAAAAGGCGACCGCTTCAGGGTGGAACTTATGGATGACAAGGA
GAAGTTGTGCATCAAGCGCGACATCCTTAAGGAGCAGATAGCCGGTTGGCCGAAGCTGCA
CGAGAAGAGCAAGGCCTCGGTGGAGAACTTGTCTACCACCATCGTTGAATGACAAGGCGA
AGCTCAGAAACGAGTGAGACCAACTGATGGAGGAATCACTTGCTCTTCTGAAGCAAGGTC
GTCAGGACGCGAAAGAGCTCATCGTCGCTCGCCTCGAGAAAGCCAAGCTCCGCCAATGTC
GTGAAGAAGTGAAGGAGATCATCGACGTTCGCCTCAAAAAATTCAAGCCGGCCAAGATCG
TCGGAGACTTAGTAGATAGTATGTAAGGACCCGCGCCGATGGTTGTCTCTGTCTTCCTTC
TTATTTTGTGTCTATCTTTCCGGAGTTGCCACATGTGGCCTTTTCAACATGTTGTCTATC
ATTAGTCAGTCAAAGTTCATACTATACGATCAGGTGTTTGTCCCGTGGTTCCTAGAATTA
GGTACTTTATTTGACAATTGTAGTACACAAAATGAGTACCAACACTCGAATTTAACAAAG
CAACAGACAACGAAATCTTGCAAGTAAATTCATAACACAAAAGAAGGGCCTAACACTTGT
TCTTGATTACAAAAGTAGTCCGCATAACTTCATAACACAAAAGTAGTGAATAACATCATA
GGACAACACATAAAAAGCTTGCAAGTAGAATGACGCCTAAAGAGGACGGAAGACCCTCTC
CTTCTCAAGTTGAACGGTGCAGCTAATGCAGGATGCCACTGCCCGCAGCTCCCGCTCCCG
GTCGACCAGAGCCATCTCGTCAAAGACAGAGTCTAATGGCAGAAGTGGATTCCGATGACG
GTGCACGGAGAGGATTCGCCCGACAACGGCTATGCCACCCTGGCCCCTCCATGTGCAGTG
ACATCGGGACCTTTGAGCCAAGACGAGTTAACTCTAAGGAAATGTAGGTGAAAACAAGGT
CAGGTCCGAAAGCCGCAACTCGTTGAAGTCAATGGGGTGGGTGTAAGGGGTTCGCCCGAT
GGCCGCCAAGGTGGCCCCTAGAGGACGGTAGGCATCACGCAACCGCAACACTTGCGGGGC
AACATCGTCCAGCAAGCGGTTCACGCGACGATCATGGGCCTCCTCCCTCTCGGACCGCTC
GCTCTCTACCTGGCTAACCGTCAAGGAAAGTTGGTTGCCTAGCGCACCGGCCGCCTTACC
GAAGAACGACTTCGCGGCCTCAAGAGACCTGGGATTCGACTCAATCAGCTTGTGAAGCAC
CACCAATTCTCTCTGATGACAGAGGATCTCCCCGTCCTTGGCCCAGAGCTCCGCATCATT
TGCCCGAAGCTCCTTTGTCACGCGCCTCACCTCAGAAACGTTGATCTCGTGCTCCCACAT
AGAATGGGAAAGCAAGCACTGTGGGGGTGTGGGGAAGGGGAGGGGAGGAATGGCGGGGGG
ATAGAGGATGGGTTTTCTTTGTCTCTTTCGTGCACCTGTAGCGACAAACATTGAGATGCC
TCACCTAGCTTTATAAACGCTAAATGAATACCCGCTTCCCCATCTCACAAAGGTGACTAT
TTAGTAGTGGGTTTTAATGGCGGAATCATCATGACTACCCTGCCGCGTGAAAAGACCGAA
GCAACACGGTGGTTTTCTTTGTCTCTTCGGTGCAGTCAAAGATTAGTCTGGCGCACGAGT
CACGCACACTAATTAGCCGTCTTTAAGTTCCTCCTGTTGGAGTCGAACTTAGCCGCCTTT
AGCGACAAACAAGAAGGCGGCACATGGCTGGAACTTGCCTTCCAATACGCATCTTACCCT
GGTCTATACACACACCTAAGCAATACACGCGACTGCAGCTCAACTAAACACGTCGTAGTA
ATAGGTGTTTGTGCATACGTCCTAAAATGCTAAACAATATGGCATGTTACACAATGCAAC
ATCAATCGGGTGGACGTGTTCTATGTTTGGCATGTTACACAATGCAACATCAATCGGGTC
CAGGGTTTCCAGCTTCCTTCCGCTATCTGGGATTTTCATCGCATTTTTTCTTGAAAAATT
CTTGGGTTTCTATGGTTTTTTTGGAATTTTCCTGGCATTTCCCTAGGATTGCTTAGGATT
TTTTGAAGAAAATCTATAAAAACCTGATCATTTTTACAAATTCCAGAAAACTTATATAAG
GATGTGGTGCGTGGGACAAAAACACTGGTTACTAATAGACTCAGAATTATGTGCTCCCAT
CCAATATGGAGGGAGTATTATGTTTAGTAACACCGCCATTGTGACGGTGACATTCACTGT
ATATCCAAAAAAATCATCACCCTCGCTACAACATGTATAAATCAATCCCCAATTCCCAAT
TCTCCAGGGAGAGAGCTCACCGAAGCACACCAACCCACCCAGTACGTATACTTGTACTTC
CCTCCACAAGTGGCTCCTCTTCCTGTATGCCAATCAGTCAGTTACATCCAAGGCCATGAA
CGGGGTGCAATCTGTGTTATTGCACAAGCTCCGGCATCAGCCTCAGCAGGAATGAAATCT
CCCGCTGCGTGAAATTCGGCGTCGACGCGGCATCTTTCACCACTTGGCTGCTCAGATCAT
TGATCTCCGTGTCGGTCTCCGGGGAGGCGATGAGGTCAGAGACGGCCCCCGTGATCTCCG
GCACGAGGTCGACGATCACCCCGTTCACCCCCATGAGGTGCTGCATGTACACTGCCTCCG
GCACGTTACTGCACATTTGCACAACGGCGTCAGAGACATTTTTAGCATTCAAATTCAGAT
AGCCTGCAGCCCTACTAGGATGTAGTTCCAGAGATGCTTATGAAGAAGTAGAGAACTCAC
TTGAGTGTCCCGTAAGTTAGTAGGGAGAGGTCAGCCTCCTTGATCATCGGTATGGCGGTC
GGAAACCTGAAGACTGCGCGGGCCTCGGACACGATCCCTTGCATGCCAGTGGAGAGGCAC
AGCTTGACCGCCTCTTCCAACGAATTCCTCCGCACGTCGGCGTAGATCTCCGTCCCTCCG
TTCGTCAAGAAGTACACCTGGCAAACATCATAACGATGGTGATCAGTGATATTCATGGTG
TGGATACAAGTTCATTGGCACTCACAATTTGTCCGGTAATAGTATTGTACTCCCTTTCAC
AAATGTATTGAACTGCCAGAACGTTTTATATTTGTGAACAGAGGGTGTACTTACTGGGTA
TGTACTCTGCAGTTTTCGCATGAGTTGCGCAGCATCGGGCTGGAAGCTAGAGAAGATGAT
AGGCCTATCCTTGGCACACTCGAAGACAACCTGTTCACGAGTTGCAAATCTGATGTGTTA
GACCACAGGTATCAACGCAGTAGACAACAAAAAATGACTTGTGGGTACTACAGTAATACA
TGCCTTGAGGATGGCCTGGAGGATGTGAGTGAGCTCTTCCTCTTCGTATGCAAGATGGTC
ATCGAACTTCAGCTCGACATTGAAGCCCAATCTTGGAGTGACCTTCTCGAATGCTTCTTG
AAGGGTGCAAAGGGGATCATCTGACTGGACGTTCCAATTCAACACCCGACCGTCCTTCAT
TTTCCGCAGCAAAGGCTTTCCATTCTGAATTTAGCAATAAGCAAGGAATGGTCAGATGCA
TTCTAGTACTATAAAACTTGAACTTGCTCATGGCCAAACGAGCACGGTGGTGTTCTGCAT
TTTCTCCGTACCTTTCCTTGCTTATTTTGTGGGCCGTACTGGAGGAAGTCTTCCAACTGA
AGATCAGTGACACGCTTATCTGAAATTTTGCCCTGAAGAATAGATAGTCCTCATGAGATT
TAGGTTGGTTGCTTACACAAGTGATGTGGAAACAGGAAAATATCAAAGTTGGCAGCATGT
CAGGCGGTATTATCTTTCAGCATGTGTTCTTTCCGGTTTCTATAGGGCTGTTTGGATTGC
AGACAATAACTACCCTACCAAAATCTTGTATGGCTGCCGAAATTTCAGGTGTACGTCAAC
TTTTTGGCCAACTATTCAGTTTTATCGCCAACATCTGGGTGAGCCCACGATTTGGCCAAA
TAATTGATGCGCTCCATTTGGTAGGACGGGCGTGGTCTCCATCCAAACAGCCCCTATGAT
AACTCACTGGGGAAAATGAAAATGATGGAAAGTGAAACGCGTACACAGCATCAGCAAGAG
GGCACATTTGAACTTACATGTTCTTCAGTAAGGATGATGTCGTCATGGAAGATGACTGGG
CAGCCGTCCTTGGTCACCTACAAAATTGATATTCATGGGTCGCTTCTCAACATCTTTGCA
CACTGAATTATTTAGGAGACAAAGAGAGAAGGGCCAGAAGTGGAAAAAAATCAGTATCAA
TTTTGAACACTTTCAACAAGTTTAACTTCAAAGCAAATTAGAAATGGAAACATTTGCTTT
GCTTTGTCCAAACGGGGATGGACTGAAACGATAGATATATGCGGCACGCAAGATATGTGA
TCTGGATCAGTACAAGGTGGAGGTGGGGTTTGGCGTTATCAGAAGTACTAGATCGCACTA
GTGCAACAGGACAAGCGAACAACTAGCTAGTGTACTAGAATATCTTGCATGAGTGCTGCT
TCAGGTACGGCAAAAGTTGAACGGTCCCAATACAACACTGGATAGACATCGTTGATGGAG
CCTCGTCACGGTCCATTGATGCATCGTACACACCGGATTTTTTTGACAACAAAAAGAACA
TCTAATATGTTTTAATCGTACGATAGTAATAATTCCGTTAGCTCGAGAATATAATGATCG
TCCTAGTAATTGAACATCTAAGTGACTTAATCAGGATTTAAGTGACTTGTAAGATGTGCA
ATACTCATAGCACATCTAGATATGCTTTAGGAAAAAATGTTGTGGTGTTATTACCAGCTG
TGTTAATTATTTTGTGCTGGTGAGCTGGTCAGATCTGCCGAGCTCGATAAGCCGCCCCAC
TTCTCCACATGGGAGGCCACCGCGACGCACGTGGGGTCGCTTGGCTACGCGGCGACCTTC
TCCCTTTCCCTTTCCCCAGCGGCGACACGGTCGAGCCGCTCCGGACGGCCACGTCCCCAT
CAACAAAGATCCCCTAGACCGGACACACTACACCGAGGAGAGCTACACCAGTTCCGGAGG
CCCGGGAGACCCACGTAGACCGACCCCATGCACCCCTTCCCTTCCTCGGAACCCGCGCGC
GTCACAGCAGCCTATACCTAATTGATTAATTAATTAACGTAGCACACAGGGGGGGATTCG
ATTGGAGCAGAGGAGACGGAATCGATCCGATAATTATACCTGCACGTCGAACTCGACGTA
GTCGACGGCGAAGCGCGCCGCCTCGTTGAAGGACCGGACAGAGTTCTCCTTGACCTCCTG
CAGCCGCCGGTCCGGCGACGCCAGCGCGTTCATCCCCTTGCCCCGGTGCCCGATCACCGC
GAACCGCCGCCCCGCGCCGCGCTGCTGCCTCTTCGTCGTCGCCGCCGACTCCGCGTCTGC
AGTCGCGCGCGCCCGGGCAACACACGTTATCGCCGGCCGATCGATGACCAAACGAGAGGT
AGGAACGCGGGGACGGCGAGCGAGACGGCACGTACCGAGGCGGACGCGCGCGGCGGCGGC
GAGGTGGTCCGGCACGACGACGTCGAGGGTGGGCACGTCGGCGACGCGCGCGGCCTTGAG
CAGGGCCATTGATCGGTCCACCGACGCGGTATGCGTACGCACGTGCGGCGCGCCGAGCTG
GTGGGGCTTCCGGACAACGGACGCCGGGGTGGATTTGACGCGGAGAGGAGAGGAGAGGAG
AGGGGTTCAATGGCTGGCTGGCTGGTTGGCGACTTGCAACGGACGGAGGAAGAGGAGTTT
ATATGGACGGATGGACGCCGGAATTGAATGTGACGCCGGAGCGGGAATATTCCAGGGTGC
CGCTCGGGCTCTCGGGTTTATCCTCCGGGATATTCGCTTTGCCGCATTGCCTTTCCGGAC
AGGTCTCCTCTCCTATTTTCACGTCGCCTTTGTCCCACTTTTCCTTCTCCTTTTTTTTCT
TCTTTCACAAACAAACATCTGGAGTAATAACTTTTTTAAGGCAAAAAAGGTAAACAGTCC
ATAATCCATAATTAAATAAAACTAGTAGTATAAGTGCCGGATTGTTTTTAAGAAAGAAGA
GGCTTCACATCACGGGGAACATCGGCAATCAGCACAAAATCACCGTTCAACCTTGCATGC
GCAGCTAGCTCTTGGGCCAGCGCAGTCCTGCCTCTTCTAATCGCCTCAACGGGAGACCTC
GTGGAAATTGCCCAGGAAGTCTTCCACGTCAGCCATGACTGTATAGGCCTCAATTATCCT
GCCTCTTGGGATCCAGCAAGAAGATAGGGTTTGCACGTCTGACTCCACGCAGACGGGACC
TCCAGCTCAATACAATAGCAGCAATCCTGTTAACCCGATCTGCACGGCCAATGCCTTGTT
GGATGAATTCACATTTTTTTATTGATTAATTTAAGGCTTATTTGAAACCACAGTAGATTA
TGATAATCTAGATCATGAAGATATATTATATAATCAGGTTTATAAAAATAATCTAGATTG
ATATGTTTGGAGGCCAGGTTATATAAACTATAATTCAGGTTTACATTGCACTAGCAAATA
TGTTCGTGCGTTGCCCTAACCAAATAAGTATGGCTCAATACCTCGATGTATGAGCGTCCT
TTATTTTTTTAATTTTAACACAATGACTCATCATGTTGACACTTCTTTATTTTTTCCACA
CTCTTTAATGATGCCCGGTGTGTCCATGTAATTACAATGCATTTGACGTGGTAAATCTCA
AGACTATGAGCCAGCCATTGCATGCCACACTTGTAATTGTGTAGCATAATGGGATTTTTT
AAACTTTAACAACTAATCTCGTCGATCACAAACTACTCCCAACCCCTAGGCATATAAACA
CTTCTCAAGAACTAAGTAAAACCTAAACCTAAAA