Map Locations of contig_45390 (5773 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_45390

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61328 2 603 bp AK361864 Available Available None





CDS Structure of MLOC_61328






Contig Sequence (5773 bp)

>contig_45390 5773 assembly3_WGSMorex_rbca.fasta
TATATAGGAAATTAATGGGAATGCGATTAAGAAGAAAGGAAGCAAGCGCCCATTGGTTGA
AGAAAGGTTAGTTTCTTATCTTGCCATGATTGCTGCAGATGGATGATGAAGTTGAATTAT
TCGGTGCTATTCCTTGACACCATACTGTAGGATATTTATGAATGGTAGTGAATGATTATT
ATTGTTGCTGATCACATGACCAAATAATCAAATATGCAGTTTTCATGCTGTGACAATGTG
CATTCTATAGCAGTTTGTGAAAAGCTAATGGAATTGTGTAACTTTGTATCTTTGCTACTG
AATGCCATTAGCAATTGTGCAAGGTCTTCGTGAAAGTAGGAAATATACAGTATTGTTGAA
GACTTGAAGTCAAATTGAAGCTTTAAATAAATAAATGTATTGAAATGCTGAATCTCTATG
TGTTATGCACGTTTATGTATGTGACCTGATGTTCCTTCAGTCCTATGAGCATTTTATGGC
AACATGCTCATCTTGATTTTTATCTTGGCATAAATTATAACTCAAAGTGTAATTATCTTT
CATTTCTATTGTTCCTGCTGCTTCAAGAATGCTTGGCAGTTGGCACCAATAAATGCCCCG
CTTTGTTAAGTAGTATGTGAACCTTGTACTAAGTTATCATATTGCCCCATATACACACCT
GGTGAATTTCATAGATGCTGGGCCATTTAGAAAATCTCCTAATCTTATTCTGCCATATTC
AATATAATTTCTATGGCATGAGCATCTTGAAAAATGCTCAGATAGTATTCTATTCAACAA
CATATTTTGTTGTGGACATTGTTGCATGTTTTATCTGTGATTTTTGATAAGTTGGTGGAC
GAGATCTAAGCTTGTATTCTGTTTTTCTTGTAGTTTCTTCACCTGGTTCACCGATACAGA
GCACAAGAGTCTTGCTGATGGGGTGCAAGATGAGGTAACAAAATCATGTCACTTATCTGG
CCTTTGCTAGTAAACTTCTAGTGTTTATTTATCGTGATGATTTGGCAACTTGCTTTATGA
GCTCTTGGTCTAGCAGATGCTTATGAGTTTTGAACTGCAGGTGGCAGAGATCATCAAAGA
AGATTTGTGGCCGAACCCATTGAAATATTTCAACAATGTTAGTATTATGTTTGAGTTGAT
GCATAATTTTATTATTAAATTCCTCGTGTCTGGCCCTTACAGATGTTTTCTTGCAGGAGG
TTGAAGAGTTTGAAGGAGATGATGAGGATGAAGAGGTAAGCTCTGTCTTAGCCTGTCGTT
TACTTGGGACGGAACTTCCTAACATGTCTAGTTCAGCAAACAAACAGGGTAGCTTATTGC
TTTCGTTTTATTATGTTTGCAGGGATCTGATGGCGAGGATGCTGATGCTGATGAGGATGA
GGACGAGGAGCTCTGAGCCCTTGGTTGTCTTTGGTGCTTCCCTGATGAAGCGTTGTCTGC
AGAGGCTGTGGTTGTCTGAAGGGTGAAGTCATGTGACCCTTTCAAGACTGTTTTGTTTTG
TGTTTGACTTAGCTGGAACTTAGCCTTAGGAGCTGTTTAATGCGTTATCGTACTGTCGTA
TTTTCGACTTAAAGGAGACCTCTATATATCATAATCTGGCGATATCTATGACAACAATTT
AACTTGCTGATGACTCTGGTCGTTGTTTGTGCTGCTGCAATATGATGCGCTTTCCGATGT
ATAAGTGATATGCATTAGTTTGCTAGTATTATAGTCGTCTGATCTATATGTGACATGCAT
CTGTTTGCTTAGGCCCTGTTTGTTTAAAAAGTCCTAGGACTTTTTTTGTCTCAACTAAAA
AGTCCCTAGTCCCTACCTGTTTCTTTTCAGAGATTAAAACAGGGACTAGAGGTCATTAAA
TGACCTGCATTATTAAATGACATGCTAAAAGCAAGGACATTGTTGGAAAGAGTGTTAAAA
AAGTTCTAAAAAGACTTTAACATAGGGACTTCTTTGATTAGTCCCAAATATTCTATTTTA
GTCCCTAAAAATCCCATTGTTTCTTTCAGATGAGATTAAAAGAGACTTTTTTTTAATTCC
TAAAGTAAAAAGTCCCTGTAAAGAAACACCTCCTAAGATTTCTTGCATAAATATAAGGTT
GCCGCTCCGGCAGGAGTTTTCTTCCCGCTAGGCTCTAGCTGAGCCTGATGAATTAGTTTT
GTGCAAGGTATCTCACTCCGTGACTTGCTACCAGGAAAAGAGTTTATTTGGCGGATGCAT
CTCTAGGGGCGTGTTTGGTTCAAGGGATGAACTAGATGGTTATGGGTATCCCTAACCAGT
TGGCTATGGAAAGCCATCTTCTTTTTGTTTGATTTGAGTGGGTATGGTTAGTTCATATTT
TTGTTTGGTTTGAAGGATAAAATATGATTGTGAATAGTCAAACAATTGTTTGGTTTTTAA
GAGAAATCAAGAATAAGAGGTGTTGCGTCAAGTTTGTACTCCCTGTCACCATGAATCTCT
AAAACAGAATGCCAAAAGGATGAGAGGATTGGTACGCAAGAACTTGCAACACAACAAACA
TAACTAATCAGTACACAACATCACACATACCATGCGTTGGTACAGTACACAGCAGCATGC
ACACCACACATCCATTTTTTTTAACAGAGAAAGGCTCCAACAGGTGCCAATTTATTCAAC
TCAAAGACAGTGTATATCATGGGTTACAGAAACTGCTTAGAAGTAAGAGTGAAAGAAACA
CTAGAATCTGAGAAAGAAGAGCTGAATAGAAGTCCTAGAAGATAACACGGGAACAAGAAT
CCCTGCTGGTGAACCACATGACTAACATGACAAGGCAGCCCAACAAAAGAAAAGGACATG
AACTGCACTTCTGCTATCAAAGAAATATAGATACACCAGGGAGCAAACGCCAAGAACAAT
TGGACCAACAACTTCAGAATGTAGCTGGGCTGAGTTAACTTCTATCGAATCCTGAAGAAA
GTAGTGAAAGAAGAGCACCAACAACTTCAGAATGTAGCTGGGCTGAGTTAACTTCTATCG
AATCCTGAAGAAAGTAGTGAAAGAAGAGCATAGAGGCAGTTGTCCAGCCGTCCTCCAATA
ATCATTAGCCAAGCCTACAAAATCACAAACAAGTCACTTTGCATCTCCAGGAGTCCAGCC
CTGCAACTAAAAAAAATGCAAAACAAGCAAAGCAGAGCATCTTGAACAGAGAAGAAGTAT
ATAAACAAGAAGCAAAGAATTAATAATAGTGCATAGTGCGAATCGTAACACCAGGAATTT
GAAGATTAGATAGAAGGGACACAACATTGCAAGAGGTGGAAGAGTGATTTCGAGCAAAGC
AACAAATCTGAGTGTCCCTATTAGATGTGAAAACCTCATGAGCAAGGTTATGGGTAACTC
CATTAACTTCTCTAGAAATATGAAACACTTTAGGATTTAAAGCTAGAGAGTGTTTGAAAA
AAGTGGCAAGATCCTTTCTAATATTCCAAGGAATAGAGGGATCCAAGGTGTTGCCAAAAC
AACACATTTAGCAAGAGTAAGACAACCAGTTAAAAAAGCAGCATGCATAATATTGAGCTC
ACAGGCTATATTAGCAGCAGAAGCAAGAGCAATAGATTCAGCTTGCAAAGGAGTAGACGT
AGAGGAAGCTGAGGTGTGGACTTGAATATTGATTTCTCCCTGCTCAGAAGGAATAGAAAT
ATACTCCCTCCGTCCGGAAATNNNNNNNNNNNAAATGTACAAAATTGATGTATCTATAAC
TAAAATAAGTCTAGATACATCTATTTCTAGGACAAGTATTTCCGGACGGAGGAAGTATAT
ACCAACATGTGTGGCCACTTTTCCTCGTGGAAGGCCAGATTTTTTTCTTCTAAAAGCTGC
ATCAGAATAAATTTTGGCTCCAACAATTAAAAGATCATACGTGAGAGTATCACGTGGCAA
AGGAAGTTGATTGCTAGTAGGAATTTGTTGAACCTGTTGATTCTTAGTAGAAAGACCAGA
AATGACATCATGAGAGTTCAAATTTAAGGCACCAACAACAATGCTAACTTGATAAGGAAG
AGCTTTGTTTCTATCAAAAAGAAAATCATTTCTAGCTTTCTAAAGACACCATAGAAAATT
TAGGATATTCGGAATAGAACCGTGTGGGCCACTCATTTGAATAAAAGCAGCAAGCACTGA
ATGCATGAGAAACCAAGGAGAGGAAAACCAGGCCACACGAGCAAGATGAGAAAGGAAAAA
AAGATGAAACTCATCCTCCGGTTAACCAGATCGAAAACACATTAAAGTAATATGAATCGA
GAAACGACCAACACGCATACCCGTAGGCAAGGCTTTTCTTAGAAGTCTCCACACAAAAGT
TTGCACCCTAGGAAGCATATTTTGTATTTCCAAAATAATTTAAAAATATTTTTCAAATAC
AAAGAAACAACACTAGAGGCATGTCTAGGATTAGCATGGATATCTTGTAAACACAATTTA
TAAGCAGTTTTGAAGGAGTAAATACCATTTGGAGTAAGATCCGAGCACAAAAAATCTGGA
ACTTCATCATCAACAATATTAGTATGAGCAATAATGGAAGTGAGAGGTTGCTGGAAAAGT
GAGAACATAAGAGTTTGATTCCAAATCCTTTGTCCTAGAAGCCAAAGATCCTTAACCAAT
GCAGGGTACACAAAACCAACTTGTTGAGGAATAAGATGATCATGAATGGAACTCCAATTA
CTACACCAAGGTGTGCTCCAAATGGAAATGTTACCATGCGTTATCTGATAGAAATAATGA
GATTTAAGCTTAGGTAACATTTTGAGAATGGAAGCTGAAAAAGTAGATTTGGGAGGAGCA
GGAGTAGTAGTCCAAATGGAAGCATTAGGGAAATACTTAGATTTAAGCGCAAGATACAAA
TGAGAAGAAGGGGCTTTAGCTAACCTCCAAGCAGAAGTTAAAATCAGACTTTCATTGATG
GCCTTTAAGTTCCTTATACCTAGACCTCCTTCATCTTTGGAGCTGCAAATGTCTTTCCAT
GCTCTAAGACAAAGACTCTTTGTAGAGTCATTTTCTCGAACACGTGTCCACCAAAAATTT
CTAATAATAGTCATAAGCTTAGCAATGAATTTCTTAGTGAACAAGATTTTAGCCATATAG
TAGACGTGAATGGTCGAGAAAACATAACAAATCAGCTCAAGACGGGCATCATGAGAAAGC
ATGTTGGCTTTATAAGAAGGCAATTTTTAAAAGAATTTTTCTTGAACAAAATTATAAGTA
AGAACTTTGTTTTTAGCAGGAAGAATTAACGAGTGACCATGATGAGTAAAATTTGCATCC
AAAGAAGAAACAGGGAAAATCTGCTTGATGTCCTGCATAGCATTAGGAGAAAAATGAGAG
CTGAAAAGAACATAAGATTTAGTCTAGTTTGGAGTTTGACCAGAAATAACATAAATTTGG
TTTATTAGATTAGCCATGGTGTGAGCTTCTTGCAAAGTGGCCTGTCCACAAACCAATAAG
TCATCCACAAATAAAAGAGAGTGAATGGAGGGGCAATTTGGTCTAAGAGAGATATCGTGA
AGTTGATGGGCAGCAAGAGCTTCTTTAAGGGCAATGGAGAGTTCATTGATAGCAATAACA
AATAAATAAGGAGACGAAGGACAACCTTGACGAATACTGGTACTTGTGATTTGTGTTGGG
TTTTTCGTGAAGAGCAACGGGTTATCGCATCACAATGTGGGTAAGTACTTCCCTTAGTTA
TGAAANNNNNNNNTATCAAACCAATAGGAATATCAACAACAACCGTATTTAGCGGCTCCA
CACAAAAGAACAA