morexGenes - Barley RNA-seq Database

Contig contig_45349

Source Contig contig_45349

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_45349 (6462 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_45349

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61292	4	2556 bp	MLOC_61292.1	Available	Available	LOC_Os03g03100.1, FRAME:+3, EVALUE:3e-29, 13103.m00285 protein OsMADS50 - MADS-box family gene with MIKCc type-box, expressed
MLOC_61293	1	295 bp	None	Available	Available	None
MLOC_61338	5	1882 bp	MLOC_61338.4	Available	Available	LOC_Os02g31030.1, FRAME:-3, EVALUE:0.0, 13102.m03392 protein glycerophosphoryl diester phosphodiesterase family protein, putative, expressed

CDS Structure of MLOC_61292

CDS Structure of MLOC_61293

CDS Structure of MLOC_61338

Contig Sequence (6462 bp)

>contig_45349 6462 assembly3_WGSMorex_rbca.fasta
TCCGGAGTCTCTTCCCCACTTGTGGGTGAATCATAGTCTCCATCATCCTTTACTCACTCG
GACAATGCTCTAATAATNNNNNNNNNNNNACTTTTATCTACTTACAACTCATGAAAGCTC
GATGTGAAGAACTATTATTCAATATGAATGCCTCTAACAGTGTACTAGGATATGCAATGA
TCTAGCATGACATGTACCAGTAATATAATGAATGGTGGCTTTGCCANAAATGCTATGTCA
GCTCTATATAATCATGAAAAGCAATATGATGATGAATGAACTAGTCATATGATGTAACGA
TGGAATTTGCATGGCAATATGTCTCGAAATGGCTGTGGAAATTTCATGATAGGTAGGTAT
GGTGGTTGTTTTGAGGAATATAAAGAAAGGTTTGTGAGCGATAGAGCATATCATACCACA
GGGTTTGGACACACCGTCGAAGTTCGCACCGATCCTCGAGGTGAGAATGGGAAATGCACG
GTACTAAAGAGGCTAGCAAAATATGAGGAGGTGAGATTGCGTATGTCCATGGTTTCAAAT
TAGTCATAAAGAACTCATATACTTATAAAGAGGAGAATAAGGACTTCGACAGATCACTTA
GCTCCGACGGCAAGGAGATCCATCTGGATCTGTTCTGCATTTCTGAGTGCTAGTTCCGTG
AGAAGGACGGCAAGGGCACCTGAAGGGCAAGGGCAACCATGGATGATCTTCTTTATAGCT
AGTATGTAGATAAAACATGCCAAATTTTGCTAGTCTGATGGCATCTTCTGATGTAATAGC
CGGATGAAATTGTTGCATCATTTACGTTTACATTGCATGTCCTTGTATGTATTTGAGGTT
TGTTAATTGAGGTGCCCGGTTGTGCGAATCAAGGTTTGAGGCATGACCGCTCACTATCCT
CGGACGTGCCATGGCGCGTCCGTGGGGCGTTTAAGGGGTCTGATTTGGTGTATCCGAATG
CATATGATCTTAGAGAGTTGATGGCATGTTTCGCACCGGCACGCTAAAAATAAGATTTAA
TTATTACGAGTTTTGCACGTGCAAACCGAAAAACTAGGGGCATACTATTTTCGTTCGGGT
TTATTAGTGTTAAATGTAATTTGATATATATTTATTTGCAAATTATAACTGACATGTCAT
AAAAATTATATTGTTGGATTCATATTTGATTGAAGTTTTCAGTGATAGATTTTTTTATAA
CCCATATTCATTACGCAAATGTATTGTTAAACTTTGGCTCAAAATATAAGTGGGCCTAAT
CAACCCGGATGGATGGAGCACATTGCAATCTAGCAAGGCACATGTCCTTAGTATTTCCAA
AAACACATTCCTAAATTTGAGAAAGAGCTACAATAGAACAAAGTCTCGCTCTCTCTCTCT
CTCTTATTTTGCAAGGTGAGTCTCCGTCGTTCTTTGAGTGTGTGACTGTCCTGAAGAAAA
ATGTTGTGCACAATTAACTTTGCAAATTATAGTGCAAAAGTCCATACGTCAAAGATGTAA
TGAAGGAACTTTGAAGATGCCTTCGAAGAAGAAACATGATGATAACAAGCGTCGTTGTTG
CAGACATGACCCCCCTTGATCTTCGAGTAGTGGGTGAGTAGGCGATGATGGTTCAGTTGG
TCGGTTGTGGCCTTTTTGTGCTTGTGAGCAGGTTCTTTCTTATTGATTGTCCCTTAATTA
ATCATGCAATTGTATAGTTTTCGACTTAGTTTTTCTTATAAATCAGATCAATGGTTATTT
TTATGATGTTGCAGGAACATCTTGCCTTCTTGGCGAGGTTTTGTGATGAACATAAAATAT
GTTATGCACTAACTTGTTCGCGCTTCGTAAAGGGTCACCATGTGATAGGCCCCCTTATGC
CAGAGGCATTGGGGCGAAACTCAAAACAATGAATGCTACTACCATGCCATACTTTCTTTT
CGCCTACACACGTATATAGTCCAAATGTCCATTTCTCAATCCTGATGCTAGATACTCATT
TCTGATGTTGTCAAAACTTGGTGCGAAAAAAGGGGTTAATTAGTGCGACACAAGTCGTTG
GTGCGGATCGGATCCTAGGTCCAGGTCATGGGACCACAACATACAATTACGCCTTATAAA
CATGATACCAATAGATAGATCGTGGGATGTGCACCACTAATAATTGAGTAAACGTTTTAG
TACTAATTTGTGGCTGGATTTCTTGATTAAGTAAAAGGTGTAGTAGGAGTACGAACCATA
ACCTAAGTTCATTGAATCGGTGTCGAATTTATAGCACCGTACTGCAGGCAGAGGCCGTGA
AGGGAACTGGTCCATCCACCCAGGAGCGAAAATATAATATTGCGTGTTCCAGGGTGGGTC
ACCGCAAAAGGAGCGACGGGCTGAGCCTGACCGGGACTTTATTTTTCCACTTCCCGGAAA
TGGACAGCCAGTGGGACGCGGGGGATAAACCCACTTTTCTCCCTAGGGAAATTTTTGCCG
TTTGTTGCCCATCCCCGGATCTCCATAAAACGGCACCCCCACCCCCACTAGCAAGCGCGG
AACATTTCCTTTTGCTCTGGCTGCCCCGGTCGCGCCGTGCCTCCCCATCGGCCACTGGTG
ACGGCGTGGCGGCAACGGCGTCAGGGACCGAAAAGGAAAGCCGAGGTGGAGGCGGAGGAG
GAGGAGGGGCGAGGGTGGGTGGGAGAGGAGGGGCAGCAGCAGCCAGCTACGGCCGACCCC
TACACCGCAGCGGCCTCACCGCGCCTCCATCCCTTGCCATTTTTGGTGAGTCCCCTCTTG
CCGTCCTGGCCAGATCCCCTTCCTCCTCGCGTGGGTTTCCACTTTTCGCCCTGCACGCGC
CGCCCCAATTGGGACAACAGTACCCACCTCTTACTCTACAATTTTATTTATTTATCCATC
CATCCATCCATTCATCTCCCCTCTCCTCTCGCGGTTTTCGTTTGCGTTCGTTCCGCAGCT
CGGCCGATCGGGGGAGGTTTTCTGAGTCTGGTTTGGTTCTAGGCTAGATTTGCGGCGGCA
CGGGAGGAGGAGGAAAAATGGTGCGGGGGAAGACGCAGATGAAGCGGATAGAGAATCCGA
CGAGCCGGCAGGTGACCTTCTCCAAGCGCCGCGGGGGGCTGCTGAAGAAGGCCTTCGAGC
TCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCGTCGTCTTCTCCCCCCGCGGCAGGCTCT
ACGAATTCGCCAGCTCCAGGTAACCCGATGATTAGGCGACTAGTTAATTCGCCTTGTCTT
TGTTTACTAAGTAGTATTGCTGGTTGGGCCAGAATGCGCGTGGGAATCCCATTTTGTTTT
AGTTTTAGTTTAGTGTGTCCCTGCGAGAAATCCCACGGATCTTCGCCTGTTCCCCGCGCC
AACTCCTATACTCCAGTAGGAGTAGCAGGCGCAGGGAACTCTCGCCGGCCACTGCCCAAT
GGTGGCGCCGGAAGCCTCTGCTCCACTAGTCTCCTCCGCCCGTGATGCGCCGTTCCTGTC
CATCCACTTCACTTGGCCGATGACTGGCTCCAAGTTTCCCCACTCCTCCATATCGCTGCC
AGAATCTTGCCTCGGTTCCAGCGAGCACCAACATTTTTAAACTGATAAATATCTGCTCCG
TGCGTCCTGCTATCGCTGCGAATTGGGGTAAGCTTTTAAGTGCCTCGGGACGGAAGGACG
GTTAGTACATGTAGCCTACTCAGTGCCCTATTGGCCTATTTTTTTTATCAATATATGGAC
GTAGTACTAGCCAGTAGAAGAATTTGGGATGAAAGGAAGGCAAAAAATATACCCCTACTA
CCATTGGCCAGGCTAGAATTCGCTGGGACGCAATACATGCTTGTCCGGACATCGGTTTTC
AGGCACTGTTTGGTATTGCTGCTAGAGCTAATTTGCTGCCCAGAAACGAAACCGGCGCAT
GTGATATGGTGTACTTGAACTGTCTAGAGAGTACTTTTGCTCATGCTTAGTTAGCTGTGG
AACTAGCGAACCAGCATTTTTTTCTCCTTCTTCATCTGCTGTAGTTTAAACAATTTACAC
CATGGAGCAGAAGTTAAACAGAACATTTCCCCTCAAAATTAAATTAAATAAGAAACTGGA
AGTCCACCAGTTAGGCAGTGGCCGCCCAGCCTGCCACCCGCGTTCAAGCCCTAGGCTTCG
CAGGACGTGTGTCTGGTTGTTTCTTTTTAATAAAATGATTGGTCTCATTTTTTAAAGCAA
ACAAAACAAAACTCATCATTTAATTTACTAGGAATTGGAATTGTGAACAGATTCTTTTCC
ATTGCTCTCAAACAAGCCCCCAAACGTGTGTCATTTTGTATTAGAAGAATACCCCCAAAA
TGGCACAACAGCTTACAAGGGACTGATAATCTTGTTCGGATTTTGGTGCAACAAATACAC
AGTAATTGAAGTTTTGGGGCAGTGAACTTGTTATGAATATGTTCTTGCTTGAGATGTAAG
GTGCTAGTGTGGGCTGCAGAAAAGAATTGTTTGAGATGTAAGGTGCTAGTGTGGGCTGCA
GAAAAGAATTGTTTGAGATGTAAGGTGGTTGTATGCAGGAAGGAATAGCTTCCTGTCATA
ATAGCTAACTGAATCAACACTAAACTTGTCAGGCTTCCAAAACATGGTTTCTTATTAGAT
TATACAGCTTTCTTAGGGAAATAAACTTACAGTTTTTTTATTAGCAGATATTTTATGGTT
TTGTCTGTAGGTAACAGCCATACCAAAATCGAGGCAAACAATCTCCATGATTGTAGGGCG
TCCACTATTATATTCAGATAAGGCAGATCATGGTCGTAGGGTGACAATTGAAAACTAAAT
TAGTCATGGAGCAGATTTTGCAGTCCCTAACTGTAGGCCACAAAAGAACAAATTACGTGC
TGATTTAGATAATAGATTTATTCTCTTCATTTCAAGAAGAATATGATCTCCGTTTTTGGG
CATGTTCTGAATTTATATACTAACTTCCTTCCAGTGCTAATTGCATGCAATAACAAAAAA
AATTCTTTAATTTTACGCATAGGAAATAGAAAGGTTTTCCCTTACCTCGTTGGATCATGC
TGTTAGGAAATATACTAAACTTGTATTTGCTGGTATCCATAAGCCGATATTATATATACA
CACACACACACACACACACACACACATACACACACACAAGTGTGCTAAATATGCATGAAA
GATGAAACCCTTATACAACGGGGGGATATTACACGACAAATATATACAACTCTAACACCC
CCTCAAACTCTAGGTGGACCAACAATACTAGTTTGAAGAGATGGAAACCATGTTGTGCTC
CAGTCTAGAACTTTGTGAAAAAAATCCACCAACTGTAACTTGGAAGGCAAATGCTGAAGA
GCCATAACCTGATCCTCCACACCACACTGCACAAAAGAAGCATCAACACCAATAATGTGA
GCTCATTCTTCACAGGGTCGGGCACATTGTCGATAGCACATGTACTGTAATGACTAACAA
GAAGGGAGTAGTTGTATAAATAGAAACACCGAACTCCTGAAGTAACCATCATAACCAAGT
CATGTCTGTCGTACCATCTGTATAGGCCTGAAATTGTAACAAACTAGAGAGGGGAAATAA
AATATGGTGAGAGATCGGGCCATGAAGATATCGTAACATGGAGAAAGATGACTATAACGT
GGAGAAACAAAGTGATTTAAAATATGGACAAGATAGAAGATGATGATAATGTATTGGAAC
AGACAAGGGGTCACCATTAGAAGCATAGAGGTGAATATTGAGCTCCATGGGATTCTCAAC
AATACACTATTAATAAGAGTAGGGCGAGCAAGAAGATCTTACATATACTTCTCTTAGAAA
ATAAAGAAGCCATTAAAGATAGAAGAAAACTGAAATGTAGAAGAAACCTTAGTTCCAAGG
AAGTAGTGAAGAGGGCCAAGCTCAGACATAAGAAATCGCTCACTAAGAGGTGATTTCACA
AAGGCAATGTACTTAGGGTTGCCACCAGTGATGATCATGTCATCAACATCTAGAACAAGA
GTCCGACTATGAGCAGAAAGGTGGAGAAACGTCGCAATATCATGATCACTCGTCGAAAAA
CTAGTGACAGTCACCACATAGGCGAAGGGCTCAAACCAGGCATGAGGGAGTTGCTTAATT
CCTCATCCAACTCAACATTAAGAAAAGCACTCTTACATCAACTAAGATACAAACCAATGG
TGAACAACACCATAACAAGAAATGTGCGAACAATTGTTGTATGGGTCACAAGAGCAAAAG
CATCACTGTAATCACGACCATACTCTTACTGAAAGTCATGAGCCACATGATAAGATTTGT
AGCACTCGAGAGAACCCAGAGAGTCTTAACCTTGTAGATCCACTTACAAGCGTTAGGACA
TACATACGGAGAAAGAGAAACGAGATCCCATGTACCAGTGCGCTCAAGAGCAACAATCTC
CCTGTGCCATTGTCATCTGCCATTCAGGATGAACAACATCAC