morexGenes - Barley RNA-seq Database

Contig contig_45207
Source Contig contig_45207
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45207 (9054 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_45207

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61185	1	1233 bp	MLOC_61185.1	Available	Available	LOC_Os05g34770.1, FRAME:-1, EVALUE:1e-41, 13105.m03622 protein cytochrome c, putative, expressed
MLOC_61186	3	3013 bp	MLOC_61186.1	Available	Available	LOC_Os05g34760.1, FRAME:-3, EVALUE:0.0, 13105.m03621 protein expressed protein
CDS Structure of MLOC_61185

CDS Structure of MLOC_61186

Contig Sequence (9054 bp)

>contig_45207 9054 assembly3_WGSMorex_rbca.fasta
ATTTCACTAGATGTCTATATACAAAGCAAAACGATTGAATGTACACTCTAAAGTATGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTGAAATCTCTACAAAGACTTATATTCAGGAACGG
AGGGAGTATTATCCAGAGAAGAACATAGCCAACCATTCAGGCATGGGCAGAAGGAATTCA
GATACTGCAGCAGGACTAGCTTCAGATTTGTTTTGGGATGCTCCCACATAACTACCAATA
AGAGGCGATGTTTTGACAAGTAACCAAAATATTAACACAGTTTAATCAGAAACCTAGGTG
TTGATTGGTATATCTCCATAGGCTTCTCTACAGCTTTTCAACACATGAAATGCATTGATG
TAATCACAAATTAGGTAATGTAGGTCCTCAGATTATGGCATAGACTACTGACAGAGAGAA
TAACAAGTAATATAACTCTCTCAGGTACATACTTCCAGAGGTTCAGGCATAAATATTCTA
ACACGATAATATCTTTCACTAACTCAAAGAGCTCCCTGGGCTTCTATACAGTTTCGTAAG
CAGGTACAAATCACAATTTAAGAATACTTCATACTGTCATTCCGAAACAGAAGTACAAAT
CAGTTATAGAATTTTCCTATTGTCATCCTCGCTGCACATGTACCAAACATACGAGATCGT
AGAGTGGAGAACAGAAGTTGCCATCACAAGCATTGTAGAGCAAAACACAACCACAGGTAA
ATGGAACTTCTTAAGTAAAGTTAGTGCTCATTGACCATACCTTCTTGGGATTAAGCAAGT
AGTCATACAGAGTGTTCTCCTCCCACTCCACAGCCTTGTTCTTGTTTGCCGCAGAGTAGG
AGTAACCAGCGGTGGTGCCCGACTGCCTCCCAAACAGACCATGCAAGTTTGGACCTGCAA
GGGCAACATAGTGCTTGATATCAACAAAAACAATCTTCTGTCAAATGCTCATGTATACGT
ACATATGAAGATGGGATATCATGGAGGTTGAACCCGAACCATCTATTTAACACAGCAACT
AATCATTTACAGGAGATACAATTCAACATCACAAAACATGAAAATAACCAGAAATGTAAC
AAAACTGTCCGTTTGGGTCAGCTTGCCTCGCACATTAGTGAAGACCAAGGAAATATACAT
GCCTTTGGTCAATCCTAGAATAAGCAGATCCCTAAAATCATTTATGAGATGATCGCAATA
AAATAGACACAACCGCAGCCAGCAGCATCACGAAATTAATCTCAAGCAGAGAGAGCAGAG
CAACAGCAACCTAATCACACGACGCAGGTGACTAAGCATTTCCCAGCAACAAACAATCGC
GGAGGCATGCCCTACTGCAATAGATCACGATTTGAGCAACAAGCAACCACCAGGCACATG
TAGATTCACAGTACGGCAAGCACCAGAAGTCGGGAAGGAGCATGTACCCATCGACCGCTG
TGCTAAGCAACGCAACAGGAGTAAGCAGAGCAACAAACCCACGGCTGAATCGAGTGCCCC
CATCACCAAGCGCAACAGATCTAAGCCGCTACTTCCGCCAGCACGAAGGGCGCACACGCA
GATCTATCCGCGCAGCGTCCGATCTGATCTCAACCACCGCCCCCCACGCGAGCAGATGGG
AGGGGCGATCCGGATCTCCCCCGCCCGGCACGGCGCGGGGCAGGCGAGGATAGACAGGCA
CGCCGGGACGTCGGAGGGGAATCGGCGTCTTACCTTGCTTGTGGCCCGCGCCCGCGTCGA
CGGTGTGGCACTGCGCGCACTTGGTCTTGAAGATCTTGGCGCCGGCGTCGGGGTTCCCGG
GGGGAGCCTCGGAGAAGGAAGCCATCGCCGCCGCCGCCGCCGCAGAGACTCGCCGGAGGA
CTCGAGGGGGGGAGGCCAAGTGAAACTTTTGCTCGCCTTTCTGGCTGCGGGCGATTTCGT
GGGGGATGTGTTGTATAGACCGGTCTAACGGTGCGGAAGTACAAGACTGCCCCTGAGGTC
TCGGGTGCATCGGGCACGTGGGCGGGGGCGTTTCGGGGAAACGGGAGGTTCGAGAAGGTT
TCCGTGTCTTGGAGGAAAAGAAAGGGCGTGGGGTGGGCGGCGCGTGGACGGTAGGCGTGG
ACGCCAGGCGCTCCGCTCGGTGTAGGGCGCCCACCAACTAGGGCTTTCCGTGGACCGGGT
CTTTCTTTTCTTTTTTGTTTGTCTATCTATGGTGAACCGGGTCTATCAACTCCTTTGGGG
GCATAGCGCTCGACTCGTGCCGTCGGATGGGGAAAGGAGAATCGTGTCCGCTGGTGGGTA
GGGCGTATATGCGTATGGACATCGTTCAAATATTTTCAAGCAAAGGAGCCTTTCCTGGTG
TCTTTTCCCTGTCGAGAAATTTTTCAAGACAAAAAGGGTTGCCTGGTTAATCAAGGGGTC
AGATCATCTACAGCCGGACTTGTCAAATCCGGCCACTTTATACGCCACCGACCCCTTACA
TAGGCTATCGCACATCCATACATCATAAATTCGGAGCTTCAAATCCATATAATCCGTACA
TGTCAATTGTATAATATAAATTATCCGAATTCAACGGTTCGAAATAAAGCAAAGCAAATT
ATAGTTCAACATTTCAATATGTCAAAATAAAATCACTGTCCGGACGTGGCGGATGCCTCG
CTTGCTGGCAGGATGTTGCCTGCTCAGAGGCCGTCTTGGTGTCTTGGTCCACGTGCATGC
GGGCTACATGCTCCACCTGCATCATTGTCGTGTGCCCCCTTGCTGCCGCAGCCTCCCTTG
ACGCCTCGTACTCCTTACACTCGTTGATCTCCTTCTTCTTTTTCACAAATCACTTTTTTG
CATACTCATCCAAGAGGTTGTCGTCCGTCTACATAATCTTGACATCCTTTGCGTCCTGTG
CAAGTTACAACCTTCCATTTTCAAGCTTAATCTCTTAAAATATTTTGGCCTTCTCGAGCT
GTCATTTGATCGTTACCTCTTACTTTTCCAACTCGATCTTCACCCTCTGAACTTCTAGCT
TCTTTCCCGCACTCTTTCGGCCCCAATCGATCCTCTCTTTTTGCACATCCAACGTGAGCT
TGTACTTTTCCTATTTTTTGTTCTCCCTTGCGGAAAAAATGTTCGTCCATGTGGAGGATA
TTTTTGGTGTTGCGGCGTCGCAGGAGGCCCTTGTCTTCTCCCATTTGTTTCTCATTACTT
ACATGTTATTTTTTGGCACAGTGGCTCTTTCATTCTCAACAACAATATCTCGTCCTATTC
ATCATATATATACTCTGATCTTAATTCAAAAAAGAGAAACTATAATCTGACTGATCTTAC
AGTTGTTGCTATCTGCATCCTCCTGCACAAGGTTATCTTGTCTCGTCTGGCGCCCCAGTA
TCTTTTTTTTTACCTGTTACAGTATCTTATTTACTGGCACGACGCATGGCGAATTAGTGA
TAGATCTAGACCGTCGGTCGTCCTGTGATCGAACCAAAGAACACACGCTCACAATCGTTC
CAAAGCGAGACAAGAAAACACCATACACGAACAATTACATCTATTGAATCATCAACACAT
GAACATCGTCAACAGGTGGAGAAGCACTCCCCTAAACTTGCCGAGCTTTCCAGGTGTCAG
CGTTCTTCAGCTAAAAGCTCAAATTTATTTCAGGTATTTACAGCGTTCTAGGTAGTAGTA
ATTCTTAAGGCAGTAGAGCTACGGCGGCATTAGTGGATATGATACACGTAGGTACACAAC
ACTACTACGGTTAACAGGTGACAAAAGTGGTGGTGGTTGTGGTAGCGCCGCAGGCGAACA
TCAACCGTGGGCACGGGGAATAGCACGGATGATGCTTCGGCCATGGTGTTGCATCTGATT
CCTTAGCAGGTTCAAAGCTATCTTGTTCTGCAGGATCCTAGAGGATGGAGACCTGGGGTT
GGGTTAGTGCCAGTGTGGAGTAGAAGCCCTGCATGGACCAAGATTCATGTATGATGAGCC
ATATGCCATAGGCAGGTGTTGAACACAGTAAGTCATAATGTGAGATGGCAATATTAAGCG
TTTTCATAAGGCAAATGTTTTCTGGTGCCCATGATCAGATTGCTTACTTTGGCTTTCTAC
CACCAACAGACAATTTATTCGGGCTTGGCTTGCTCGGCGACTGGGATAGCCGGCGTGGTG
GAGGAGGCGGTGGTGGCTGCAGAATCAAGTGAGCAAAAGGTCAAGTCTAATGTCAAGATA
TACACCGTAAATTGTGTATCCGGTCATGAATACTCCCTCTGTACCAAAATACTTGTAGTT
GGGGGAAACTAGGAAACTAGACTAGTTACCCCCAACTACAAGTATTTCGGTATAGAGGGA
GTATACTTTAAACCAACAGTTATCATTCTGTAGCAAAATAAAAGGCCATACGTTTGGTGC
CCTTGTCTTTGCGCTTCCAGTCTGCAAAGGAGTTGCGTTCTTTGATGCAAATACTCGAGA
TCCAACTGTCTCCTGAATGCCCTAAAAAAGATCACAATAGCGATTACATCTCTGATGTTT
ATTCTTGAACTTCCACTCTCTTGTTATATTATAATTGTACATTTTTTTCAGTAATAAGAT
TATGATGTGCCATGGGTGAATGTAAAATTCTATCCTCATAATAATGTAATAGAATATGTT
CTAAATTTCACGCTTCCCTGCAGCAACTGACAGTTAATTTCCGCTCAAAGAAGAATTATC
AGCATAGTGTGAGTCAGTAGAGAAGCACTCAGATATAGATAAAACACATCATGCAATCAG
CTTAGCAAGAAAATGAGCACAATGCTGTGATCGAAATAACCAATGGCACCGCATGAAAAC
AAGGTCACACTTAGTTACCTGCTTATTTGGCTTTCTGATCTTCTCTACGACTCGATTGGC
TCCAACATTCGCAGTCAAAACTTTCCTTGGAGGAAGATTAACAGAACTACACAAATAAGA
GTGGTAGTTGTTATTAGCAGTACGATTAAACCAAATTTGGTAATCCAAACCATTATAGCT
GTGTAACAAAATTAGCACCTGGATTTTAATTTCCCGCCAACTTGAAGTTCTAACCTTTCC
TTAGCATAGCTGCCAAATGATGCAAAAAGAAGCAATCAAAATATGGTACAAAAAACAATT
AAGCATACATGTCTGTAAGTTTGTACTGGTACCTTTTCATCTCTGGTTTGCTAGTTTTAA
CAAGATTTTGAGTAAATGCCTTCTGGGGAGTAGCCTGCATGAGGAACCGAGAGGGAACAG
TCAGAAATATGTATGTTAACCCCTTTCAGCATATGTAAGACAATACAGTTAATGATGTGT
TATGGTGAGCAAAGGGATTGGAACGTACCGCTGTGGCCATAGCACCATTTGAATTACCCG
GCATTGCTCTCAACCTTATTGGTGTTTTTGGATCCAATTTTAGGGTATTCTCTTTGGCAA
CAGCACGTCTTTCTCCCGTTGAAGGGCGACAAGGGGTGATGACAACATCAGCATGCTTTG
CTGCACTTCCCCTGCTGAGACATCGTTCTGGAGTTGAAGGGCAACCAGGGTTGCCAACAT
TAGCATGCTTAAGCCCAGTGTATCTGGCAACAGGGCGTCTCTCAGCAGTAGAAGGCCTGC
AAAGAGGAACAACGTCGGCATGCTTTGGAGCAGCTTCTCTTTTTATAGGGCGTCTCTCAG
CAGTAGATGGTCGACGCAGGGTGACAACATCAGCATTCTTCTCTGCAATCCCCCTTGCGA
CAGGCCGCCTTTCAGCGCTAGATGGCCAACATGGACTGGCAATACCAGCAAGCTTTGGTG
CCATCTCTCTGCGTGTAGGGCGTCTTTCGGCAGTAGAAGGTCGTTGTGGGGTAGCAGTGT
TGGCATTCTTAGGTGCTGGCTCTTTGGTGGCAAGGTGCCTGTCAGGAGTAGATGGTCGGC
GTGGGGTAGCAATGTTAGCATTATTTGGTGCTGGCTCTTTGGCGATAGGGCGCCTATCAG
CTGTAGATGGCCGACGTGGGGTAGCTACGTTGGCATGCTTTGGTGCCAGCTCTTTGGTTA
TAGTGAGCCTTTCAGCAGTAGATGGTCGACATGGGCTAGCAATGTTTGTTTGATTTGCTG
CCAGGTCTCTAGTGGCAAGGCGTCTTTCAGCAGTAGAGGGGCGACATGAGCTAGCCATTC
CAGCAGGATTCCGTGAACCGTCTCTGGTGATAGGCCGTAGTTCCCTGGTGGAGGGCCGTT
GCGATGCTGCTGAGGAAGGTCTTCTAAGAGCTATAGCACCAGGATCTTCTTTGGGCACAC
GTTTGCTTCTTCCCGTGGTGCCAATCACATTGGAGGTTGCTGCTTTTGGGTTCCGAGATG
ATTGAATATTTCCAGGTTTGGTTTTCTGATTTATCACAATGGGCTTGGCTGATTCAGGAC
CCTGAAAATTGTTCATGAAAACCAAATTATTAGTTTAAGGAAATTGTTCCTCTTCTGTGA
CCTATCATAAATGCAGGTATTTATTTTGTGCCTAGCATGATTGAGCAGTTGGTCATCATT
ATGGGGTCCAGGCCACTATGCTAGTTATCAGAAAACAACAGCAGCAATAATTCAATGTTC
TAACAAGATAAACACCAGACCACAATGAAAAAGTTTACCTTACTGACAAATGTGTGATCA
GGATTACAACTAGAAGTCAGCTTGACCGTCTTCGGAATAATTTTTGAAGCTTGACTAATC
CGGGAGTGTTTCTCAATAATCCTCTTAGGGGTCATCGTAGCTTCCTTGGGCGTCACCAGA
TCATCTTCACTGCATTTAGCATTTTGCTTATCATTGCTTGCATTTTCTCCGGTTTCTTCG
CCAATTATCTGCAAGCCTCCAACTGATACAGAATGAGTCATTGTGGAAATTCCATTACTT
AAGCTCTCATTGTGATCCTTGTAGCATCCCAGTCGATGCTCAGGTGTGGTCTTGGCTGCT
ATTTGTCCCATGGAATCATCAACATGAGTTCCAGATCCAGCAGGAGATGCATGCTTTGCA
ACTGGTTCATCTTCTCCTGTCTGACTAGAATCACTACCATCGCCACTGTACTCTAGATTC
AGTTCAGTTTGTTGATTTTGTTGTTCTAAAGCCTTTAGCTCCCTAATCCTCTTAAAGTAT
TCTTCAAAGTATGCCTTCTTCTTAGCAACTAATCCATTGAATTTAACAAACTCCTCAGTG
CGTCTGTCATTGGTAAAAACAGACCACTTTTCCCATGCTAGCGATTCCAAATCAAATCTT
CCAAAAGATATGGAACCATGGTCAAACACTTGTGTTGTTCCCTAAGGGCAGAAGTAACAA
GATAAAAGAAGAGTGAGATTATTGACAAAGTATTGATTCTTCACTTACAAATGGAAACTG
TTAGCTATTAAAAACCCTGGTTCAGACTACTAACTATTTACAGAGATGTCTTCTACTACC
TCTGTATCATAATATATGACGTTTTAGCAGCTCAAATGAACTGCTAAAACGTCATATGTT
ATGATACGGAGGGAGTAGTAGTTAGCATGGATTTTCTAGCAATTTTAGTTGCATCAGGTA
GATAGGCACTTGCCAGTTCATAGATCTACTATCAATCTTTACTTTGACTGAGCATCATAA
TATATATTGATAATTGATAAAAAATGAAGGTTCTTACCGGGCAGGCCTACGTAACATAAT
ACAAAAATACAAGTCATAATTACCATGGAAATTGGCCCTTTTATTATACTCCAAGTAAAT
TCTTTGTCTGCAATTATACATACCATGATACTATGGAAGTGATATTACCTGAGAACTATC
CTGTCCAGATGATTCCTCATGCGGCCATGCAAAACAGTTTTGATTGACCTCTGTTGCCAT
AGTATATTGTGTGCCTAATTCATTAAACTACAATTCCTGCAAAACCAAACCAGCCATAAG
CACAAGTAGAAAGATATACCTGAAGCTTCATTTAGGCAGTCAAGAAGATACTAACAAGAG
TCACCTACTGTTTTTTAGAATTATCTGGTGGTTTTTCAGAAAATTCAGGATCAGATATTC
GGAGCTAGGTCACTGGAAAATCTCTAAACACGGCTGACCACCCTGCACCTAGTGGCATCT
CTGACAAGAACAGGTCTATCTACTCCTAGTAGCAAGGAAGAATCAGATTCTATCTACTAG
TAAAAAACTAAGGCTAAAAACTTAAACACAATATCACCAATCATCCTGTGCTGAAAGTGG
TTATCCCCCAAGTCCACTATTTTGGAACCAATAATTTCCATCGCAGCAAATGAATTCATG
AGCCGTGATCACCTCCAACTGCACCGTTGGGCCCTTGACACCTACCTTCGGAAGACAACA
TGCCACCAACACGAAATTTGTGCATTCGACATCCAGTCAAACAAGCAAACGTAACCCCGC
GGGAAATGATTGCGTTATTTTACCCTAAAATACCCAAGATATGTTCTTGAAACTGGAGCA
TACGGGTGATAAATCAAAAAAAAAAACGCAAAGAACTTACGCCAAAACACCGCAGGGGAA
CTGCTAGAACGAATGGTCGTTCAACTGCTGAAAACCCTACCCCCGGTATGGACTTGCAAG
AAAATCACGACCAAATCTAGAAACTTTTGAAGGGATTTTTCAGAAACCACGCCGGAGATT
ACGCCCTTGCCAAATTAGGGCCGGATCTAGGTGGTGTGCCGGGTACGCGCCCAGAATTTG
CGCGGATTAGGTTGGGTTTAAGCAAGTAAAATCACATTTGGCAAGAATAAAAAGCTCATA
CCTCAAAAACCGACGCACAAGATCGAGGGCGCAGTGCAGTGGAGTGGAGGCAGCACGGCA
GGGCGGCTGTGCAGCGACGAGGCAGAACAGCGGGACGGCGAGGCGGAAGGAAGGAAGCCT
TAGGGCACAGCGGCGGCGCACTGCGGGGGAGACTCTAGACCCGCATTGGGTCGGAGTGGA
GCCTATAGGGTAGGCCAGGGGCAAGAGGAAAGAAAGGTAGTACAAGATGGTGGAGAGGAG
AAGGGAAAGTGTAGCTGCGGGGGAGTGGTGGCACGAGATGCTGGCGGCTCGGACAGGCCC
CCGCCGGGGAGGACGGGCGGGGACCCAGCCCCCGCCCGGGAACGGGCGGCGAGC