morexGenes - Barley RNA-seq Database

Contig contig_45199
Source Contig contig_45199
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45199 (6139 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_45199

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61179	14	2586 bp	AK369444	Available	Available	None
CDS Structure of MLOC_61179

Contig Sequence (6139 bp)

>contig_45199 6139 assembly3_WGSMorex_rbca.fasta
ATGCAGGAGATCCTTCAATCATCTGAACAATAAATATAAGATAATGTACACGTGTGACAC
TTAGCTAAAAATATGCGCTCATTAGAATTACGGGACTGGCGACAGCTGCAACAAAATGTT
AGTGTGAATTCCTTGGCGGTTCCTAATTAAGAAGCGTGATAGATTACATGTATATCAGTT
GATTTATTGTTTTGAAGGTTGGATACTTCTACATACCTCATAAAGAATGAGACCGAATGC
AAATGTATCCACACTTCTGTCAAATGCTTCGTTTCTGTACATCTCAGGAGCAATGTATAC
ACCTACGCAAATGAAATAACAGACCAACATATGAAATAGCCTAAAAAGGTCAATAGTATC
TACAATAAATAAGTTTCTCATACGAATCCAGTTAAATTGGTTAGGCATAGTTCCATCAGA
AAATGAATTCACTCTGGCCAAAATCTCTGGAGTAAACTGCATTCATCAACAAAAGTGACA
TGCAAAGCAACAGATGAACATATTTAATAGAAGTAGTTATAAGTCATAACCGTGGCACTA
GAAGATTTTCATGAATGACATACTAATTGAAATGATCACTAGTATAGAACCATGACACAG
AAAGAATGTACAATTAAATAGGTAAATATAACATACTTTCAAAATTTGACACTGGCTGAA
CCATCTGTAGTTTATCTTGGGAGACTTTTGTCAGATCAAGTGATCCAAAGCCTGCCACCT
TAAGTTTTCCTTCATCATCCCGCACAATATTTCTGAAACCTTACAAAAGTATCATAACGT
ACAGTCCACATAGAATAAACCACTTGAATTTAGTGCAGTGCACTGGTTTAGAGACAAAAT
ATATTTGGATCAGCTTACTTTGGTGACAAATCACCGTGGATAATTGGCTCTGGCTTACAC
TCGTGAAGGTAATTTAGTCCCCTAAATAAGAAGAAGAAATTAACGCAGAATACTTTTTCC
TCTATTCTGATGGTAGAAGAACAGAATACAAAAACTAGAGCATGAACTTCATAAATCATT
TGTGATTTCATTTTGTTTCATTGAGATAACACATGAATGAAATTTGAAAACCTTTTCATT
TGGATATCAAATTAATTTTCTTGTTACTCCGGTCTAAAAATAAACTTATTGTCAGGTGAC
TACAAAAATGATGCACTGACACGAGCAGTTCCAGTCAACAGCTCAAATGGTAGATACAGC
TTTGAAGGAAAACAAGATACATATGCCATGAATCCTAACATACCTTGCAATGTCAAGGGC
AAACCTGATCGCTTTATAAGATTGCAGGCGACCTTTTATCTCAAGATAACTCGCTAGATC
ACCCTAATGAGGGAACACAGATCTAGTCATTGATGATACAAGAGTAATATTGTTCAGGTA
AATCCAATAGGATTCTGTTCTACTGTTCTAATAACAAATAAAATAAAATTAGGTGATCTA
AGTTCATAGTACTCCATAAAGTTATGTGAAGAAACCCTGCTAGTTGGAGGATTGTTTTCT
GGAAATGATCAAAAGTGAATACATGCATTTGTTCTGTTGAATAAAGCACAGCTACTCACT
TTTTGGTGGTATTCTGAAACAATCATCAGTGGTACATTTTGTGTAACAGCTCCCACAAAT
TGGACCAAATTGGGATGCCGTGCTTTCTCCAGTAAAGTAAGCTCGTGTTTGAATGCATCT
CTGAGTTGATATGACGACAGAACTTAGCAGTATTGAATGAAACATGATAAGCAAATCCCA
AAATCAAAATAAGAAGTTCATGATATTTACTTAAATAAAACTGTTTAGACTGAAACTGTA
CTAAATTAGTTCGTCAAACTAATTATATGATAATAAACAGTGTGATAAAAACATAATAAT
ATTTTCCCTGTAACTTGTTTATAAAAAGATAAATTATTGTCCAAGTTTAATGAAGAAAAA
GGAGGTGAGTTGTAGGATTGTCAGGCACAATATCTCAATAAACTATACTAGTATTGAGCG
TTATATGATTATAATGGACCCAATTCATCATGATAATTGTCTTAGATACACTACTAAACT
TCAGTGTGCAACTTCATAATTATCAAATAAAAAAGGTCAATTGATGTAAAAGTTCAAGGA
GGCAGCTCATACATGCTATCTCCGTCTGAGAAGCTATCTTTGTCAAGTATCTTCACAAAA
ACTTTGGAGCCATACCATTTGGCTACATAGTAACCCTGTAAAAATTGTATGACAGGTACG
GCGGTCATAATTATGTCAAACAAATAAAGTCAGCACATTGCAAATTTACATGAACCTACA
GTAGAAGATATGATTTTCTTGTTTTTGAGTACTAATAGTATCATGGGAATCGGCATAAGA
ATCGGGTGTTCAACCTTAACATTTTAAGCATCATAAAGTCCTCCATGGAAAATGGTTAGT
ACTCTTACCTAAGAAACTGAAATACAAATACATGAAAAATGACACCGTACTAAGAAAGAA
AACAAAAGGAGGGAGTTTATTGACACATGCCTTTGTAACCTCCTCTCCTCTTCGGAACTC
GAGTTCAAGAGGGTTCAGTTCATACTCCGGAACTTCTTTGGGATTTGACACAGCCATTGG
AGTCTTCTTGGTTTTCTAGTAGAGGAGAATAACAAATATATATAAAACATTTTCCATATC
ATAGCAAGAGTTAACAACAGTTTCGGGAATTTTGATTTACAAAAACAACAAATGCATACC
GGAAGTTTTGCTCCTCTTGCTCTGAGAAGGTTGTAAACTTCAAAGTGCCCGTAATGTTTA
GCGTCCGCTGCTGGCTGAAATTGTGAGTATGGAAATAAAAGCTGAGATCAGGTTCGGCTA
AATAAGTAGTTGCACCGAGCGGGGGTTCAGCCACTACTTTCCCTGCGCCTATATTATCGC
TATTTCCGAATGCATCACGTTGGTCATTGCCCCAATGTGGCAGACGCTGTACTCTCAGTA
CGATATAATTGCACAAACGAAATGGCCAGAGATGCTTGATCGGAAGTAGGCAAGTACGGG
GCGTAGCGAAATTCAGGTGATGCATAGCAGGGTGGCGAGAGAAGAGAGTTTGGCGGAGGG
CGCACCGTGCTCCCCCATCGGTCGCGGGCGTTGATGTTGGCCTTCCAGCCGAGCAGCAGG
CGCACCACCTCCCCCCGGCCCTCGCAGGCGGCGATGTGCAGCGCCGTGCGGCCGTCGAAG
TCAATGCTGTCGACGTCCACCCCTTCCCTGAGGAGCTCCTCCACGCCGCCCGCGTCGCCC
TGGCACGCCGCGTACAGCAGCCGCATGGTGGCGTCCAGGTTCTCCGGCATGGCGAGCACA
GCCGCGTCGGGCGCCGGCGTCGGGTCGAGCGACGACTGCCTGGCGAGGCCGAACCGGGTC
GGCCCCGCCGCCGCCGCAACGGCCCCCGTCGCCGCGGCCGCGCCACGCCGTGGGGTGTGC
GGCTCCAGCGACAGCTGGCGCCACACCCGCGCCGCCCCAGACGACAGCTGCCGCGAGAAG
CTCCGCGTCAGCTTCGCCGCCGCGGCCATCGCCTCCGCCTCGCACAGCCGAAGTACGGAT
CCCAACCAGCAGGCGCGGTGCGAGATCGATGCCGGCGAGAATCCGCGCGCGGTTTTTGGT
GCGTGGGATCTCGCGCGTGGCCGGGGCGGAGGTGGGTGCCTCTGGGGATTGGAGACGAAC
GATGATTGGGCGTGGGCGATGGTGCTCCGTAATAAAAATTGGGCGGAGACTCGAGATGGT
GACTAGTGGCAGCGGAGCGGCAGTTGTTGGCATCAGTGGTGTACTATGGAATAGTAGGAG
GAGTAGTGGGAAGCAGAGCAGGGGAGGGGAGGGAGCCGATCGACAGGGAATAAACCGCCG
GTGAGGGGGGAGCATCGCGGGTACAGCTGGTGCTCGACCTGAGTTCAAAAGGTTTAGAGT
GGCTGACTGCCGGGGCCGGGTAGCTGTGGGGTCATTATGTCGGGGAGAGTTGGCGCGGGA
GTTGGAGGGGTTTTGCGTGTTTTTTTGTCGGTTCGTGGGGACACTTGCCGACGACTTTTT
GTTTTTTTTCCTTCCTCCGAATCGAAATTATTCTCGTCTTCGTCTAGCTGAATGAATATC
TAGCGGGTGGGCTACGAACACTTGTTGCCAGTTGAATTTTCCTTCGGTCTGCCAGTCAAT
ACTAATCTCTCCATTCCTAAATATAAGACCTTGTAAAGATTTTACTATAGATTACATACG
AAACAAAATAAGTGAATCTACACTTTAAAATANNNNNNNNTACATCCGTATGTAGTTCAT
AGTATAATCTCTACAAGGTCTTATATTTAGGAACGGAGGGAGTACTCTATACTCTTGTTT
ACTTTGGGGCACTCGATGCATGTTGTTTAAAGCAACTCCAACCGCGATCAAAACGCATGT
TATTTAGAGTAACTTCAACCGCGATCAAAATAGGACGTACGTTTTGTGCGCGTTTTATCT
GTTAGGGTCGGTCCGGTGAACATTCATGTTTGATTTTAAAAATGTCATAAATATCTTGAA
AATAAAAAAATTAATTAAACATTAATGCCGGCCTTAAAGACCGACGCGAGTCCACGAGTC
CATTTTGCATTAAGTAAAAAACATTAATTTAAACATATAAAATTAGGAGGCGCGATGTCT
TAGGTGTCCTCGTATTGGGACCAGTGAGGTCGACGAGCGTCGGCACCGGGCCAGTCTAGG
GGAACGACATCTCCGAGGCTATGGCGATGTCATCCGTCGGTAGCTGCACCGCCGCTCGCT
GGGCTGCGGCACGATGCTCCTCCTCCTTCGCCTCGGCGTCACGCTTCAACTGCTCGAGCC
GCTGGCCCTCGAGGCGCTCCTCCGTCAGTCGTCGTTGTCGTAGTTTTCCATGTAGATCTG
CTCCTACGACGGTGTCGCCCCCAACCAGAAGGGTGGCGCATTCACCCACTCACGCACTAC
CCCGTCCCATGTGTAGCTCTCGGTCCTGAGGGCGGTCGGCCCCGGCTCGGTCTTGGCGGG
GGATGGCGGGGCCATTGGCGGCACGACGCAGTCGCGGATGGCGGAGAGCGCCATGGCCTC
CGCCAGCCGCGCCTGGTAAGCCGTCGCCCCCTCCTCCTCCTTGCGCCACTCTTCCTCCTT
GCTTTCATGGAGGATAGCCGCCTCAGCCTCCTGGTCATCACGCACGACGAGGGGCGGCGG
GGTGCCAGCCCGCACGTCATGGACGCCACGCCGACCGCTGCACCGTCGACACTCGGATCC
TCTCCCAATCCAAGTGCCAGTCATGTGGCAGCGTCACGTCAGGGTAGGGGAGGGGGTCGG
TGCTCCAAGTGCCACCTCGTCTAGTGCACTAGGACGCTTATCCGTTGTCGTGGCGGGCGG
GAAGACAACGACGGAGGCGGGAGGAGCACGCCAAGGGCCGGCGGGGGCCTTGCCCTTGTT
CTTGCGAGAGCTTGAGCGTGAGAAGAAGCCCATGGTGGTTAGGCTTATCGCCGTCGGGGG
AGCAGAGGGGTGGCTAGATGTGGATGGGCTTCTGGAAGAGGATGAGGACGCCCCCCCCCC
TCCGCATGCTTAGACTAAATAATGACGCCCACGGTCGTTGACGTGTGGGCCCATGGTCGG
CGATCGTCATGAATAAAGACACGGGCGGTAGTTGACCAGCCGCCATGTGGGGACGGGGCG
AACACCGAGAGGACGCGCGGCACATCCGCTTCTCGTCCGCGTCGATGCTTTTCAGGCCCA
AATTTGGGGTGGAAATGGGTCCACACGAATGCAAACCGGACGCGTTAGGCCATCACTTTT
GTCCGCGACGACCCAAACGGATGGCGGCGGACAAAATGGGTCGCCCAGTTAGAGTTGCTA
TTAGAGCATCTATAACTCGCGTACCGAAATCCCACTTGTATGCCTGAGCAGACCGTCTGA
TTTCTTACCGGTCGAAGAAAACCTAAACCAGACATGCTTCTCATGACGGATATATGCCTA
GAACGAATCGGCACCCCTCATATTGAGTTTAAATTGGGGGCAGATATTGTTGGAAATATG
CCATAGAGGCAATAATAAAATGATTATTATTACATTTCCTAATTCATGATAATTGTCTAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATCAC
AATGTGTCCCTAGTTAGCC