Map Locations of contig_45183 (5652 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_45183

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61173 1 334 bp MLOC_61173.1 Available Available None





CDS Structure of MLOC_61173






Contig Sequence (5652 bp)

>contig_45183 5652 assembly3_WGSMorex_rbca.fasta
TTAGTCCCGGTTGGAGCTACCAATCGGGACTAAAGGTGAATTTCACCAAGCCAAGCGGAG
GGAAGCCCAAGCCTTTAGTTTCGGTTGGTGCCATACTCTGGGACTAAAGGAGGGCCTTTA
GTTCCGGTTGGTGCCATAAACCGGGACTAAAGGTCTTTTTCCTGTTTTTTTTATTTTGCT
TTTTTGCTGTACCAAATTCTTTTGTTTCTACTTAAAGCCAATTACGTAGAGTTTTTGAGT
GAATATTTTTGCCTTAGGTCACAAAAATTATAAAATTTTTGTTATCGCGAGTAGTTTTCA
AATTTGAATAATTTAAATATTAATTCTTTGAAATTTGTGTGAATCACTAGTTTGTGAATA
ACTTTACTCAAAAAATATATTTTTTAGTCATTCTTTTTCCTGATGTTTAACATTATTCTA
TTTTATCATTACATTAATGTTGGCAATTTTCAGGTTATTTTGAAAATGAAATGCCTTTGT
AAGAGATGAGTATTCGTCTGAAACCCTCGTACTTCGAAAAAGATTGTCCATTTTGTACAC
AAAGTGCATCCAATTTTTTCCATAACCCTCTCAAATTTTTGCACATACTATGTGGATGAA
AAGATGATATCATGTCAAATTTCACCCTTTTTTAGAGTTCATTTGTAGTGTTTTTCAATT
TCAAGGTCATTTAGCTAAAAAAATCATTAAATGCATGAAAAATAGCAAATGAAGTGATAA
AGTGTTCAAATTGATGACATGACTTTAAATGGTGAATATTGAGTGTACAAAAAGTCTGGA
GTTGAAATAAGTTAAAAAAAGGAAATGCCTTTGTAAGATATGAATATTCATCCGAAACCG
TGATACTTCGAAAGACATTGTTTAGTTTGTACACAAAGTAAATCCAGTTTTCCCGTAACT
TTCTCAAATTTTTAGCATATGCTATGTTGGTGAAATGATGATANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATTTGTAGTGCTTTTCTATTTCAGGATCATTTAGCTCAAAAAATCAT
TAAATGCATGAAAAATATCAAATGAAGTGAGAAATGGTTGAAAGTTGATGACATGGCTTT
GAATGTTGTATATTGAGCGCACAAAAAGTCTGGAGTTGAAGTAAGTTTTAAATAATGAAA
TGCATTTGTAAGAGATGAGTATTCGACCGAAACCCTCAAACTTTGAAAGAGATTGTCTAG
TTTGTACATGAAGTTTAATCAGTTTTTGTTGTAACCCTTCCAACATTTTAGCACGTACTA
TGTGGATGAAATGATGATAAAATACCAAATTTTAGCTTTTTCAGAGTTTATTTATAGTGA
TTTTAAATTTCAGGGTTATTTAGTTTAAAAAATCATTAAATGCATGAAANNNNNNNNNNN
NNNNNNGAAAGGGTTGAAAATTGATGACATGATTTTGAATGATGCATATTGAACAAGAAA
TGTGAAGTTGAAATAAGTTTTAAAAAATAAAATACCTTTGTAAGAGATAAGTATTCGTGT
GAAACCCTGTAAATACACTTATACTATCAACTCGAGGTTGGAGCGGTTTAGTGTCCACCA
GCCTTAACGTGGAGAAGGGGACACCCTAGATCGGACGGCGACGCTAATGCAGTTGTGCCG
ATAGAAAAGCAGGAGGCCCGTGATGACGCTAGGCCACACAAGAACCAAGGTTGCCACACC
TTACGGCAGTGTGGGCTATCACATTGACTAAGGACGGTTGGGCTTCACAACAGAGCCGAG
AGGCAGATCCTTGGAACAATCTAAGGCAACGATGCTAGCATTGTAATGTCACTAAAATAC
ACACAACCATTTTCTGTTTTTCTTCAATTTCAGTTTTAAATGACATGATAGCATATCTTT
CGTTGCAATGCACGAACAATTTTTCTAGTCCTTTCTAAGCTGCTGCTACTATAGTATTTC
CAAGTGAAGTTGCCGGATGATAAGAGTATCTCCAGCCATCCCCCTCCCAAGGTCACCCCC
AGCCTTTAAAAAAAATGGAAGTAGGCAAAATTTCCACCGAACACGGCACAAATTTAAACA
AAATTCAGCGTTTTCATTGATATTTGTACAAACTAAACCGAAAACATAATTTAAAATGAA
CACTAAACTACTTCTATGCTGCCGCCTTGAACCTTCTACATGCCGAGAAGGTTGTAGAAA
TTGGTGTAATCGCTGCCATCGTCGTCGTCACCGTCGTCGTCCTGCACTTCGTCGTCCTTG
CTGCACCCTTGCCCTGGGTCGCCGTGGCGGACGGGGTTGGACGGCTCGGGTGCCCCCTCG
TCGCTGTCTTCAAGGACGACGACGCCGCCCTCCTCGCGGCAGCGGCGTCGCGCGGCGATC
TCCTCGAGGGCGCGACGCTGGCGCTCCATCTCCTCTTGGACGTAGTCAGCGCGCGCCCAT
TTAAGCAGGTCTCTTCGTCGACGGCCATGTCGAGGTGCTCCTGCTTGACGGTGAGGAACG
CCGGCTCGGTCTTCGGCTCGACGAGGTGGGAGGAGGAGGTCGGAGGAGAAGTGATGCCGC
CCTCGTTGACGACGAGGGCGCCACTGCGCGTGCGCCGCCCTAGCGGCGTATCCTGCGGCT
CCGTCTTGACGGGAGGAGGGCCGGTGATCCAGAGGAGCGGGAGTGGGAGCCGGACGAGGA
GGAAGACGCAGTATCCATGCACCTCGGCGTCCAAGAGCTGCCGCGGCAGCGGGAGAAGGA
GCGTGGCGGCGGGGATTCCAACCGCAGTGAGTTGCCGCCCTGGATGTGCTCTAGAACGGC
CTCCAACGTGTGTCTGGGGATGCCCCATCATAGGCGGCGCCCCTCGGAGTTGATGCGTCC
GCGGGGTCAGAGTCGTAGGTGGTGGCGAGCTGGTTGACGTGGCGGCGTTTGAAGTACGCC
GTCCACAGCGTGTTGCTGTTGGGAGAGTACTTCGGCTGGTTCCGCGAGCTCTCCGACAGT
GATGACTGGATGCGGGCGATCTCCGCGCGCCGGTCAACTCCAGATGGCGGCGATGGCACC
GGTTCTCCGCCGGTGCTCAGCCTCCACGAACCCGGCACCCGCATGTCCGGTAGCGCCCGG
TAGTCCGCCTCGTAGAGGAGGCGGGCTTTAGACTCGTGCAGGTGGCGGCAGCCGAAGCCG
TCTGCCGCCGCTCCTCGCGGGGGTGGTGCTCGGCCGTTGGTGGAGAGAGGGGCGTTGGTG
GCGAGGGGAGTCGGTGGCGAGAGGTGTGCGGCCACCGGCGAAGGGAAGGACGACTTATAT
AGCCGTGGGCAGGCGATGAGAGGGCGACAGCCGTGCTAACGCATCACAGGAGAGGACGAG
ACGCACGTCGGCATGCCTTTACTACGCCGTCCGTGAGGAATCAATGGAAGACTGACCGAC
GATGCAATCTTCGCATTAATTCTCACGAAAAACAAGGCAATGAGAACGGCGACCGTGCCT
AGGGTCCATAGACGTTTCGCGCTAAAAACATTTTCCCCGGCGCCCCAGCATGCCGGCTTC
GGCCGGGGACCGACAGGGCCAAATTCGATACTAACCGGTGAAAAACAATTTTATGAGGAC
GCAACTGGACCGCTTTTTACGTTGACAACAAAAAAGACCTTAGAGGAATATGTGGGGAGG
GCGGCTGGGATGCTCTAAGTCCTGATAACGACGAATCAGCCGCTCTCATCGCATCAGAAA
ACCATTATAATTGGGAGTGTCGATAACGTAATCTTTGTTCATTCATGTTGTAACCGTGAG
GCCATGCAAACAAAGGAAATCTCGTAATCAGGAAAAAATCAAGCCCAATCAAGTAGAACA
ATCAAAATTGGTGATCAATACACATTGCCGCATGCATGTCACAAGAATATTTTATTATTG
AATCTCATCGCCGGCCATTGATTGACGTGATGGGTACCAGCAACAATCACTTTTAATCAC
AAATAAAGCAGTAACAATATTGCTGAGTTTCACCAACCCTACAATAAGCTCTATAGACGT
GTTCTGCCCAGGAATTCCGGCATGATCTTCGGCAATCTAATGCTGAGCATTCAGCGGCTG
TAAAGGCAATTACGTTCACGCAATCATCTGTAGACAAGAACATGCATCAATGAGGGATGT
CCAAATTGACAAACGTTGCAAAGAAATTCATGCAGGTCAGCTGAAAATATAGACACATAG
AAGAAAAGAGATCAATTTCTTACCAACGTGAATGGGGTTGCCTATGCCTAGTTGCACAAT
CACCATAAGGCAAAGGAGAATGATTTTCCCCTCCATCAGATAAGACACAAACTTCTCCTT
CTCGTCTTGTTCAGGTGTCAAGAAGAATACACGACGTCATATTTATAGAGTTGTAGCTAG
GGAACATTTACCCCCATTACACTCAATAAGATCAAAAAATATCCAACTATATCGTCCTTA
TAATTGGTAAAAAATGATCCCATATTTAATTGTATATATATTCGATGTTGTTAAATCTGT
CCATATATGTGACAATACAAATTTAGGAGATATTTGTTATCAAAATAAATAGTTTATAAA
AAAGGATTATGTATATATTTTTAGATGGTAACCACTTAATCTCGTTATATGTTTCTTTTT
CTATGACAATACATATTAGGAGATACTCAAAGATTATCTCTGAGCTAAAGATTGCAAGGA
ATGGGACCTGCGCCAGCAATGTTTTTTTTTCCTTACGTGATTAGAGGAAAGTAATAACTG
CTTGCAAATCACATGGTTTGAGGAAACAAATCAATGGTTTCAGGAAGCAACATAAATCAT
AGAAAACTAATTCAAGATTTTAAAGCAAAATAACCAATCTTGCGAAATTAGTATGCTTCA
TTGACTCGAATAACATGTTTCCAATCTCTACTCCTAAAAAAGCAGTCTGCGGTCGTGATG
GTAAGTTTCCATTTTGGATTATTTTCGTCATACTTCCCACCTTCGTCCAGGTTTTTTCAT
CCGGGTTTTTCGTCATACTTCCCACCTTCCTCCGAATCATCATATATTTAATAATGTATT
CATGTGAAAGAATCAATCAAATTTAATTTCTAATAAATCTTAAAAGACAAAATCTGAGTT
AATTAACCTTACCATAAGTGGCTCAATCCCATTTATTAATATTTCCATACATCATCAAAT
TACTTTAATTACTAATAAATTTTAAAGACGAAATATGAATTAATTAACCTGACCATAAGT
GGCGCAATCACATTTATTAATATTATCATACATCACCAAATTACATTAATTGCTAATAAA
TCTTTAAAGACCAAATCTGAATTAATAAACCTTATCATAAGTGCACTACTAGAAAAAAGG
CTGTTAGTGACGCACCTATTTTGCATATTAATGGCGCACTATAGGTGCCCTATTATTATC
ACGCCACTACTAATAAATAGTAATGGCGCATGCCTCGTGTGCCACTGTTAATCTACATAA
CAGTGGCGCACCACATGGTGCGTCATTACTAGGCCCAGAAATGCGCTACTGCTGTGGGTT
ACTAATGGTGCACTTTTAGATGGTGCACCACTACTATGAATATTGGAATTTTTTTTTGCT
TTTCTGATATTTGCACAGGTTACAAAATACAATACAACACAACATATAAAGAGCAGATTT
ATCGAATACAATAGAAGATTAGTCTCCGAATACAANNCATCATATTAGTCTCCGAATTTA
AAATACCGAACA