Map Locations of contig_45177 (9808 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_45177

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61171 2 1315 bp MLOC_61171.1 Available Available LOC_Os02g55880.1, FRAME:-3, EVALUE:7e-99, 13102.m06415 protein EF hand family protein, putative, expressed





CDS Structure of MLOC_61171






Contig Sequence (9808 bp)

>contig_45177 9808 assembly3_WGSMorex_rbca.fasta
AGCTGGTGTAGAGTAGATTATGAGTTTTNNNTAATCTGTTCATCTAGTTTTTATAATCTA
CATCATAATCTGTCCTGTTTGAAGACATAATAGATTATAAAAACTGGATTATATAACCTG
GATGGTTTCAAACAGGGCCTTAATAGCATAGTTGGAGAGATGCAATGAACCGACAAAAGA
GGGCAAAATGAGGCTAATTTCGCATATCGGTTGACAACTCGGGTAGATGCATCGAAACAC
AAAGACGGCTACCCGATTACTACTCCCTCCGTTCCTAAATATAAGTCTGTTAAGCGATTT
AACTATGAGACTACATACAGAACAAAATAAGTGAATCTACGCTCTAAAGTATGTCTATAT
ACATCCGTATGTAGTCCTCTAGTGAAATATCTAAAAAGACTTGTATTATGGAACAGAGGG
AAGAGTGGAACACCGATAAGCATCATGCATCACTCAGCAAATGCACGGGGGACATGGCCA
CGAGCTTGACCATAAGAGAAGGGCAGCTCACGCTCAGATGCTGGATTCCGTCGGTGGCTG
CCACGGCCGTCAAATTTCCAGGAGCAGCGAGGAAATCGAAGCACGCCTTCTTCAGCCCCT
CACAGCGGTGTTGCTCAGCCAGTGCCAGGATGGTCGCCGCCGTGCCAACGTCGATGTACT
CGCACAGCTTCTCCTCGCAGATGAGCTTCAGCCGGCCCATGTCGAACCTGTCTGCAGCGA
CGAGCAGATGCTGGCAGGTGACGTCTTCATCTTCCTTGCGCATCTCCGGCAACGAGCCAG
TGTATGCGAAGCAGAGCAGCGCCTTGAACACCTCCGCCTCCATGTCTTCCACACGCACGA
CACTGCCATCGGCCTTGCCCTCCTTCATTGGTCCGAAGAGTTGGGCGGCGAAGACCGACG
AGCGAGCAGCGAGCACGCACCGGTGCGCGGCTACGGTCTCACCGCCGACCTCAAACACCA
CGTCAGCGCCTCTCTCGGTCCTGAGGAGCTCGCCGAGGTCCCGGCGCAGGTCGCACGAGG
GCACGGAGACGAAGCCCGCAGCGCCGTCCGCCGCGTGGTAACCGTGGACGACCATGACGT
CGCACCGGACAGTAAACGAGTCGTTCTCTAGATTCTTGGAGCTCTGCAGCACCGATCTTT
TGATGAACGCCGTGAACCAGTTGAAGGTGCCGCCTTTCCTGGAAGTGAATGTGTTCAGAA
ACGCCGACGACAGCCCCGCCGCTTGCCTTTTCTCGGCCTCCCCGGTGAGGCAGAAGCTGT
ACTTCGCCTTCACCGCCGCCGGGACATCTTCGTCGAGGATTAGGCAGAAGGATACGTAAT
CTGCGACCGCCAGGTCTATGCCGTTTGGGTAGTAGTCGATGCGCCAGCGGTGGCCGCCGA
CTGTGAACGGCCGGGAACTGATCTTCTCCCCGGTGAGAAGGTCCTTGGTGCAGGAGTACT
CATGGATCGTGAGGAAGTGGTGCCCGCTCGCCGTGTCGGCCCCGATGGCGGACCTCGACG
ACCTCCCGCCGGCTCCGGAGGACGGCATTGCGAGGGTTTACCGCCGCGGCGGCGAAAGGG
GGCGGAACGGAGGAAGGAGACGAGACTGATGGCTTGCCGAAAGGCCAAGGCCCAAATCCC
CACCGGTCTGAGTCCCACACGTCATCCTCTTAATGGCTGGGATTAATTTTACCCTAAATA
ATACTACATGCGTTTTATCTTCAATTCCACGCCCATGCATCTATTTGAGGCTTCAAAAGA
AATTAAAATCCATAACTTTTAACTATAGCGTCGAATTTTAAATCTATTTTCACCATTGTG
TTTGTCACGACGAGTATTTCAAAACTAAATCCAATATGGATAGGTTTTGATAAACTTTTT
TTAAACAACTTTGGGGTGATATTGAGCAACTTTAATGCTAAAAAAACAAATTCTTATTAG
TGTACGTAGTATGATCGTCTATCAACAAAAATTCTTTTCGAGTTATCTATCATGACTAGA
AGGTTAACTAACTTCACCTTCTAGCAACCACATGGCAGATGTCCTCAGCTATTTCCAAAC
TAAAATAGTTAATTTGCGCGTTGGATGTGCATAGTTGGCTTGTCATATGTTGGATGTGCA
TTAATTTCTGTATGGAAAAAAAATCAAAAAGATAAATCGTGTGCCGGAATTATGATATGT
TTTAATCGTTGGGTTCCTCGTGACGAACTCTTCAAAACGAAATCCCATACGAATATGTTT
TGAATTTTTTTTTCAAAGGCAACTTCGATGTTAGATGAGGCAACCTTAGTGCTAAGCAAA
AGCAACTTTGATGCTAGACGAATTATATCGTGTGTATACACATGAGTAGCTTGTTGAATA
CACTGAAGTTGTGCAAAAACACACCAAAAGTTGCTAATTTTTTTTGTGATACTCGAGTGC
AATTATGACCCATTTGGTTCTTCTTTCTCGTTGTTGATACCGGCAAGACCCAGCCAGATG
ATGATGTCTGCTGGTTGGTAGTGAGAGGACTCTTAGTACCCGCAAAAAAGGGCGGGATTC
CACATTCATAGGCTATTAGGCAGGTTTGGATTCTCCTGGCAAAGGCAGATATTTCTATGC
ATTCCTCTGCCAAGTCCAGTTCCTCTCAGTCTCTCGATTGCATCGGCCATGTTCTTTCCA
ATGACAAACAGGAAGTCAGGTTGAAAATGTCATTCCGTGTTGGTAACTTAAATTATTTAC
AAATAGCAAGCAACTTGGCATCAATGGTATGCAACTGAACATCAACCGTTGGCAAATGAT
TATCAGTAATAGGCAACTGAGCATCAAAATTAAGCAATTTCACGGTATTTGTAGTCAGTT
GAGCATCAACAATAGGCAAGTGATCACCATTAATAGGCAACTAGGCATCAATGTTTGACA
ATTTCATAGTATTCTAGCGCAACCGTTGCATCTTTGTGGGTTCCTCCTTTAGCTTGCCAT
CTTGCTTCTGTAAGGCTTTAATTAAATTTTTCCTCCGTCTCGTGGAGCCGCGTAGGTGGA
AAAAATGTGTATCCCGATCGCCCACTGACAACCACTCTACACGGGACCTTTGACGCCACA
TTAGTTCCTCGCTAAGATAAAGCTCAATTAAGCGGTCGTTCATTTTGATCTGAGCATGAG
TCGGCCCAACCCTAAGAAGATCGTTCGTGAGTCTCTCCAATTCTTGCTTGAGCTTTCTGA
TCTCGGACTTGACACTTCCAAAAGTAGCTTTGCTCGAGTCCCCCCAAATTATGTGACACT
AATGATAGGTTTGCTCTCAATTCCGCTATCGTTCGATTAGGACGATTTACTTCCCAAGCA
GCTTGGAAGGCTGGGATGAGTTCTGGGTGAGTGTCCCACATGCACTCGTATTTGAAAGAT
TTCCCCTTCTTAGCCACCCCAGCCGGGGGGCTGAGCCTCAGCAAGATCAGAGAGTGGTCA
GATGCTGCTGCTGTGAGATGTTCCACCGTCGCCAGGGGGGACTGAGCGCACCACTCCGCC
GATCCAAGTGCCATGTCCAATCTTGCTCTTCTGAAAGATCCCCTGTAACTTTCTTCTTGA
AAGTCCACTTACGACCCTGGAATCCAAGATCAATGAGACCACAAACATCAACTGCATCTC
TAAATCCTTGGATTTGAACTTGGTTTCTCTGACCAATTCCATCATGTTCATCGTATCACA
ATACCTCGTTAAAGTCTCCAATGCAATCCCACGACATGTTATGGAGTGCAACCAGGTTTT
ACATTGTGTCCCACATCCTCTGACAGAGGTGTGTTTCGGCTTCCCCATAAAAACACGGCA
ACCTCCACGGATCACCACCAAGTTCTGAGATTTTGGCATCAATATGATACTGTGAATAGC
CTAAATTCTCAACCTTTATTTCATTATTCTAGTACATCACTAGCCCACCACTTCTACCAG
TGGGGTCAACAACAAAAGAACAATCAAAACCAATTGTGCTAGCAAATTTTTCAGCTCCTC
CCCTTCCAATTTGGGTCTCTACAATGCATAGCACTTTTGGGACATACTTTAGCGCAATCT
CGCGCAGCTCTTGAACTATCGGGGCGTTGCCTAATCCCCGACAGTTCCATCTTACAAGAT
TCATTGCGAGCGGCGGTCCTCCCCCTGGGAGGCCGCCGATCTTGCTGATGTGTTTTTGAG
AATGCCAACACTCTTTTCCCAACTCAACAGTGTCACGCTCCTTCTGCTGTGACAACCTCG
TCCTCTTCGGATCCTAATTGGGTGGGGGACTTGGAGGGACGACCGAGCCCCCTCCTTTAC
CGTCAGCTACCACGAGCTCAAGGCCCTAAGAAACCATGACACCCTTGCCGACAGGATCGT
CAGACGGGTGCTTCCTGCTGGCATCGCCCTCCATGTCTGAAGCTTCATGTGTTGCCTCTC
CATCACTAGAAGGCTCATGGGGTTTATTCTTCTGTTTATTAGAGCGGCGTTTCTTACCCC
ATGCAGTGGTCGCAGGTGCGCGCAGATTCTTGAAAACCAACGCCGAAGGGGGTGCACATC
ATCTCCGTGTTCTTTGAACTCATGTCCCATCATTCCACAAACTTGACACCAATCAGGCAG
TCTTTCATACTTGACAGCAGAATTTTCTCTCTCTCTTCCATCGATTATTGATGTAGCTTT
CTTGAGTTGGTTTCACACATCAAGTCGAATTCGGACCCTGTAGAAGTTCCCTTCAAAGTC
AAAGGAAGAGGGTTCAGATTCCACGAACTCTCCCAGTCTTGATGCTAGAGCTTTAACCTA
TCCGTGATAAGCTATAGGCAGGTCAATGATCCTTGTCCCGATTTGAAACTTAAATAGCTC
AATGGACGTCGGCTTCGTGTAGCCATCATATGGGACAATGATCACAGGATTTCCCCTTAA
GTGCCAAGGACCTCCCTGGGTTACACGCTCCCAATCCCCCAGGTAAACAAATTGCATGAT
GAACAGGTTATCCTCTAGGGTTTTGATTTTGACCTCCCTTGCTAGATCCCAGGCGGACCA
CATATTCCGGAAGAACCAGTAATTGCTGAAGCCTTTATCAATATGAACCCAAACAAGCAC
CATCCATCAGAGTTCCGCCGCCGGCGGGGCATCATCCTCCCCCTCATTGAGGGCCAGCTC
CTTCATGGGATCCTCGATCTTGCCCTTGCCCTTCTTTTTCGCTACCGCGGAATCCCTACG
ATTTGCCATCGAACCAAGTCGCCGCAGAACGGTCCTCTGGTTCCAGATCGCCCCGTGTTA
AAGGACGACAATGACCCGCTCAAACCGAGATCGAGTCCAATTGCCAAGGCTGGGAAGTCG
TGCGAGACCACCCTGTAATCAGCTCGAGCAACATGAGTAGGAGGAGGAAGAAACTATCTC
AACGTCACCGCCAGCAGCGAGAGGGGTCAAACCCTAGCGAGAGGGGAATACCGGTACTGC
AGGCGGAGTACTATACTAGGCACAGCCTGCAAAACGATCATGCAGTTTTTACAAATATCA
AATGTTATGTGCTGCGATGTATGATTTTTCTCACAGATTTTAAATTCAGACATGAATTTT
CCACATGAACCCAAGATGAGATCATGATTTTCCGTACAAATACTGGCCTCCTATGGTGTA
GTCGACAGCTGAAATCACAAATAAACAATTTTAAGTTTGGAACGTTTTCATGGTCTGGAA
ACTGTAACAAGAATCACTCTACATTGACACTGCATTAATCAATCCCCTCAAAACAGAAAA
AAATATATGACTCTAAACGTAAGATTCAGGCATGTATGCGGACAGGTACAGAAGAGCTCA
AAACAGTGAGCTCCCATTCTATTCTGTCACACAATCTATTGGCTATGGACACTTGTTTGT
TTCCAGAAGACAGAGAGGGCTCCTTGCATCCTCATCTCTGCTGAAATCCACATTCGCCGT
TCACTTAGTCGATGGGCACTTCCACCTCCATCTTCAGGCCGGGGTGGTCGATGATCTGAA
ACCACGTCATACAACATAGTTTACTTTCGCTTCTGGTCGAGCAGTACAGAACAAGAGCAA
TACAGAGTGAAGAAATGCTACAGAAACTGTAAATTCAGTTTAAGATGAGTACTACTAGTA
GCCACAGATAATGGTACAACCACATGAGCTATGCTTTCCTTATTCAGATGAATATGCCAC
AGCATGATACGAATGGTAAGCAAGGTTTGGCCATGTACCGTCACAAAATCTTCTATTGCT
AGGGTGGAATCCTGTGTGTACCCGGCTTCTTCCAACACCTTTGTTAGTACTTGCTGAAAT
GCATCAACTCAAATAGTGTTAGTACTTGTAGATGAGATTATAGATAGTGCTGTAAATAAG
CTTGAAAAGAGCATATTATGCATCAAGTTCAAAACGGTACTAAGACTATTCACTACAAAT
GGTCAGAAATGGCACTAATTACAGGCCATGTCTTGTGGATTTACAAAAATCATGAAATCT
GGATACTGAGCTCTTAGAGACACAAGCATTGGTTCCACACAAGCTATATTTTCTAGCTAA
GAGTAATATCAACATAGGAATTTGCACTGTGAAGCATGCTACTCTGAACATTTACTGCAA
TGAAGAAACCTACAACTTAGTGTCATGGTCCCCTTCACTTTGGAAACAAGTTATGCACAC
TTGATGTGTTTATGAGGAAACTAATAATTTGAAGATGAAACAAGGAAGGAATCACACTTG
TTCTTGTTCATTTAGTAAGTGTACTCGCCAGTGAATGTACTATGCAATAAAATACATGAT
TAAATCAAATGAGAACCTCTCTTTGTTTCTCTGACATGGATGAGCCAGTTAGATCCCGTA
AAACCTCTACCAGGTCCTTGAAGGATACTTTCCCCTTGCCATCAACGTCATACACCTTAA
ATATCACTGCTCAATGAAACACAAACCAAATGAACATCGGACCAGCAAATTAGTCATCAT
AAGGATCAGAAGACCCAAACCAACATATATTCCTTCCAAAATAGATAGACAGCAAAAAGT
GGAAAAGAAACATGATGAGCATTACACTCAATCTTTTGCTGAAGGCTGGCCCTTGCGCTG
AAGGTAGAGAGAAAAGAAACAAATTCCTTGAAGTTCAATCCATCAACCATGCGTAGCAAC
CTCTGCAAATAGAAGAAATGGAAGCTCAAAATCAGTCTTACGTCTATAGTTGACACTGCT
GAAACTCCTGAATATAGGTAAAACAGTCAAACTGAGTAAAGAAAGTCAACATACTATTTG
ACATTATATATACAGCTAAAACAGTCAAATTGAGTATTTGCAGGAGAGGTTGTGTTTTGC
TAGAAAAACTACATTATATATACAAATCAGACACAGTGAGCCATAGAGGAGAGGGGGAAT
AAACTGCAGTAGAAATTATATATGTGCGATTTCTGTAGTCTATGATAAGTGTTACATATT
TGGCAAAAGCATTATACCAGTCTTTGAACTTTGACAAGTCTTTGTTTAATGAAAAATATG
ATTCCGTTGGTATCCAATCAAAGATGGAAAGAGCTTTTTTTCCAACCAGATGAGGAAGAT
GCTTGGTTTCATAGAGACATTCAGGTTTCGATTGTGTGAAACCGTGGTGAAACTCCCTAC
GCGGATCCATTGCGTACAGGTTCTGTGAGGCAATCGGCATAAAATTTTCAGACACACCCA
GCTCCTTGATTGAGTGGGGGGTCCCGATTGTTATGCAAATCACAGGCAGAGCTGTATACA
GTATCACTGGGAAAATACTAGTATCGCAGGCAAGTGCTGTATATAATCCAAGGACGGCAC
ATAAAAACAAGAAGGATCTGCTCCGTCGGCACGCACTATTACTACAGTCAGTCAGTCATC
TGGAGCCGGCACGATAACAATCCATTGACTATAAAGCGAGCAGGAGAAGATAATTCAGTA
ATTCGCCGTGTCGGCGACGAGAGGAGGAGGAGGAGGTGAGACGGACCTGGGAGAGCGGGT
TGGTGGAGAACTCGGGGATGGAGAGGAACTCGTCCTCGGAGACGAACCCCTTGGCGCTGC
GGTCGAGCTGGCAGAATCGCTCGTACAGCGACACGATCTCCTGCTGCGAGACTTCGATTC
GATCCGTTCGATTTCAGGGGGAAGGAAAAACACAGCTCAGACGCGTCAGGAATGGAATCG
ATCAATTCACCACCAAATCGAAGGAAGGGGAAATTGACGGAGAATCGCGCGCGCGCTCAC
ATAGGTAGCTGCAGTGCTCCTGCACCTCCTCGATGTCGTACTGCGTCAGCATCGACGACG
CGTTCCCCATCGCCCCGGCCGATCCGCTCTCCGGCTCCGACGACGGCTCGCCCTCGCCGG
CCTGGTTGGGGTGAGGACTGGTTGCTTTGGGGTTCGGGAGGGAGACGTGCGGAGGAGGGA
GTACATATCGGCCGCATATTTATTTGCGTCACCGGTGGATGGACCTTGTTTCCGGTGATC
TCGTCAAGATCGCCAGGCAGCGCCGCCCGATGACGACCCGGATCGGGACCGGGACCGGGA
CCGCCGCCCATTTACGAGCTTCGGTGCCCATCGCGGCCGTTGTCAGTTTCCGGCCCTCGT
GGTGGTCGCGCCGGCGCGGGTTTCCGTCTCCGTCGGATCGGATCGGATCGGAGGCCCACT
GTTGCGCTGCACGGCACGCCAGTTGGGACCCGGCCCCCGTCCGGTGCGGCGCGGCCAAGG
CAAAGTGGGTGGGCGGTTCCCAGTCGCGCGTCACGCAACCAACCCTGACTGACTTGTGGT
CGCTCCGCCTTACGCCCCGCGACCTTTTCACTCCCTCTCCCCCGGTACCTTTTTGTTGAG
AAATAAAACATGTGATCAATTATATGGAAGGCATGCTTTTTAAAATGTGTCTGTTGGTGA
AAGATCAGTACTGGACGTCGGCGCGCCGGTGCGAGCGCTCGCATCGGTCGCAGCGGTACC
GTCAGATCTACGAGGGGGACCGTTAGATCTATCCATGCAACATTTTTCTTCGATACAGCA
AATTTTTAATGAACGTAGCAAAAAGACGAAGCTAATGATGCGTGGTAGTAAAAGCCAAAC
GTCGGTTGTAGCAAATATCTACGTGAACGTGTATGAATTTTTTTCTAGTGAACGGTTGCA
GCAAAAAATGATGCCGGTTGTAGCAANAATTAACACGGTTGTAGCAAAAGTCAAACGCCG
GTTATAGTAAAAATCCAACGAAGTCGAGTTGCAACCAACCGTGGATGCAACTTTTTAAAG
GGATAAAAATATAGCAAAATGACAAACGTTTGAAGGAAAATTAAATGTGGTTGCAGCAAA
TCGGATAAAAACAATGTTGCATGGCTGCCAGCGAGGCGCGCGGCCGGCGCGCCGGATGGA
AGCATTTCCTTTGGGGAAAAGGTGTCTCCCCAACACACCCCTTCATCTTATAAATAAGTG
GGTCTCCCACATTGCAATGGATCTAGTAAAACTTTGAACTCTTTATTTGTCTCTTTGCTT
TCATAATTCAATACGTTATCAGCACTTGGCTCTCCGCTGTGTCAGTTAGGCATGCCTGGA
GCGGCCCGCAAGCATCATTCGTTTAGGATCAGATGTAACGACGCTTCTTCGAAACTAATC
GTTGGATTGAAGTGGCGCTCTTCGACGCACAACACAATGGCTACGCCTACAGCCACGGGG
ACGCATCATTGCGTCTACGGCAAAGAGAAGCATGCATAGGCATGCACGTTCATTGAGGAA
ATCGATCAGGAGAAGGCCAATTTGATTTTTATTTTGTGATTAGCATCAGCGACTCACTGA
TCATGTGTCTCTAGAACGGAGAGCAATTTCCTTTTTGCCTCACAGAAAATCCATCAGGAT
CAGTGGCGGAGCACCCAGGTGGGCAAGG