morexGenes - Barley RNA-seq Database

Contig contig_45052
Source Contig contig_45052
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_45052 (6454 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_45052

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61063	3	2471 bp	MLOC_61063.2	Available	Available	LOC_Os06g39750.3, FRAME:+2, EVALUE:0.0, 13106.m04124 protein 3-ketoacyl-CoA synthase, putative, expressed
CDS Structure of MLOC_61063

Contig Sequence (6454 bp)

>contig_45052 6454 assembly3_WGSMorex_rbca.fasta
TTGGGAGGAGAACTTTTAAAGATTATACAATGGATTTTCTTCAAATGAAGATGATGAACA
TTCTCGAAGGCAATCACATACAAGGAGGAGTCTTTATCAACATGATATATATTATAAAGA
CAAGCATTGATTAGGGCGAGTGTTAGGAATAAATTAATTAGGAGATAATCCCTGCTTATG
TCGGTTGCTTAGATTGGCCACTGCTTCTTGTAAACCGCCTTTGCACCGGGGTATATATAC
CCAAAACTTCAACCAATGAGATGACTGTCCATCATTTGCTCTCTCTCTCTCTTTCTTTTA
TTCTTTCACAGAAACCACTGTGTTTTGTTTAAATACTCAGGTAATATTCGCGGATGTCGT
TACATCGCGTTCAAAAGCTGGCCGGCCGTTCCGCCGGAAAACTCCAATCGCTGGCTTGCT
CCCACCACGTTCTCTCCGTTCCAAAGCATGGAATCAGGCACAGCTGTCACAGACACCCCA
CGCACAGCCCACCGAACCAGCGCATGCGAGGCCCCACGTGGCCGCGGAACAGATCGCCCT
TACGGGTACATTAAACTGTACCCAACTAAACAGCCTAGTCAGACGCGGGCGCCCCGGTCG
TCGCCCCACCATCCAGCCGTCCGTCGCGAGCCGCCGGCTGCATCCAAGCTGGCCGTCCCA
GTCGCCGACGGGTGGGCCACCACGAGGTTCCCCCCTCGTGCCATCTATTAAACGCCGACT
TCCGTTTCGCTTCTCTCCCTCCCCCTCCCGTGTTGTTCGCGACGGCAAGGTCAGGAGAGA
GACGAGTGCGGCGCCAGAAGGCGGCAACCGCGGCGGCGGCGGAGGAGGAGGACCCGGCGC
CGTCTCCGAGGCGGAGTCCGGTGGCACTGATCGTCGCTCCGGCCATTTGAGCGGTATGCT
TCGGGATCCGTCTCTGTCATTTCCGTTCTGAATTACTCTACATACCGTAATATTATTATT
ATTATTATTACCGGCCGTGGACTGTTTCGTGGGTGGCCGAGGGAGGGAGGGAGGCGGCCA
TGAACTCGAAACGCATCTCGATTCGCACCTTCGTTCCGGGGGAATACAAGATTCGTTTTG
CCGTCTAGAATTAACTAGGGGTTAAAAGTTTCAGCTGCCAGATCTCGCATTTTGAATTTC
TTTCCGCCGTTTTCTCTGGCCCGGCGTAATCTCCGTTTCCTGGATCCACAGGGGCACCAT
GTCCATGGAGGACAGCACGCCGCCGGCCGGTGCCAACGCCGGCGAACGCGCGAGCTCGCC
GTCGCCGTCGCGTCGCCTGCCGGACTTCCTGCAGTCGGTGCGGCTCAAGTACGTTAAGCT
GGGGTACCACTACCTCATCACCCACGGCATGTACCTCCTGCTGACCCCACTCATCGTGCT
CATCGCCGTCCACCTCTCCACGCTCTCTCCGGGCGACGTCGCAGACCTGTGGACGCACCT
CCGCTTCAACCTCCTCTCCGTCATCGCCTGCTCCACGCTCCTCGTTTTCCTCTCCACCGT
CTACTTCCTCACCCGCCCGCGCTCCGTCTACCTCGTCGACTTCGGTTGCTACAAGCCCGG
CCCGGAGCGCCGGTGCTCGCGTGACACCTTCATGCGCTGCTCCAAGCTCACAGGCAACTT
CACCGAAGCTAACCTCGATTTCCAGCGCAAGATCCTTGAGCGCTCCGGTCTCGGCGAGGA
CACTTACATCCCTCCTGCCTTGGTCACCGTGCCGCCCAACCCCTCCATGGACCTGGCGCG
CCAGGAGGCGCAGGTCTGCATGTTCGGTGCCATCGACAACATGCTTGCCAAGACCGGGGT
GAAGCCCAAGGACATTGGGATTCTTGTTGTGAATTGCAGCCTGTTCAACCCGACGCCGTC
ACTGTCCGCCATGGTGGTGAACCATTACAAGCTGAGAGGGAACATAATCAGCTACAATCT
GGGAGGAATGGGGTGCAGTGCCGGGCTCTTGTCCATAGATCTGGCCAAGGATTTGCTTCA
GGTGCATCCCAACTCGTACGCCATGGTGGTCAGCACCGAGAACATTACCCTGAATTGGTA
TTTTGGGAACAACCGGTCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGTTGCGCTGC
GATCCTGCTGTCGAACAAGCGGTCAGACAGGAGGAGGTCCAAGTACGAGCTGGTACACAC
CGTGAGAACTCACAAGGGTGCAGATGACAAGTGCTTCAGCTGTGTCACCCAGGAGGAGGA
TGACAGTGGCAAGGTTGGCGTCGCACTGTCCAAGGACCTCATGGCGGTGGCTGGGGATGC
GCTCAAGACGAACATCACAACGCTTGGGCCGCTTGTGTTGCCATTCTCGGAGCAGCTGCT
GTTCATGGTCACATTGGTTGGCAAGAAGCTGTTCAAGATGAAGATCAAGCCATACATTCC
TGACTTCAAGCTGGCATTCGAGCACTTCTGCATCCACGCTGGTGGGCGCGCTGTGCTTGA
TGAGATAGAGAAGAACATGGACCTCACCGATTGGCACATGGAGCCGTCTCGGATGACTCT
CTTCCGTTTCGGCAACACGTCCAGCAGCTCGCTGTGGTACGAGCTGGCCTACAGCGAGGC
AAAGGGGAGGATCAGGAGGCGTGACAGGATATGGCAGATAGCGTTCGGCTCGGGGTTCAA
GTGTAACAGCGCCGTCTGGAAGGCACTGAGGTCAGTGAACCCAGCGAAGGAGCAGAACAA
CCCCTGGATGGACGAGATCGACACATTCCCGGTGGAGGTTCCCAAGGTGTCCAAGGTTGC
TGAATAATTTTGCCTTTTCAGCATTGTCACCCGAAACAGGAAGCGCGCAAATCTTGCCAT
TGAATTCGACTGTATTCAATATGTTTGGGTGATCTGTCGGGTATTAATTTTAGATGATTC
CATTTAGGTGGTACAGAGGGGTGTGATGTCGTGCTGTTCACTATTTATGCCATTGATCAG
TTCTAAACATCTTGTGTTCCATGTGCATCGACTGCCTTGCATTAATTTTCCATGTGCGCT
ACGCATTTGATTTGTTCCGAGTGTTGGCCATCATATCGTGCTAACCTGTCGTCTATGATA
AATTCCGTCTTCGATGTGCATTGCCGATGCGATATGGTGGTTGATACTTGGAGTTCTGGA
ATAACTTTTCTACCTTTGACTGATATGGTGGTTGATACTTGGAGTTCTGGAGTAACTTTT
CTACCTTTGACTGAACCGTGAGCATGTACTGAGCTGCGAAGCGACCAACTGTTCACACTT
TTGACTTTTCCTTTGGAAGGGCCAAAGCGAGACTTTTCTTAACGCAAAAGAATTAAACAT
TCAGATTTGCTAATTCTCATCTACATGAGATGAGAGTAATCAAACAAAGTACAGTATGAA
AAATAACGGTTTTGTTTAAAACACTTTCGACCAAGCAACTTAGAACCAAGTATTTTTTTT
CCTTTCTATCTATTATATAATTATATAATTAAAATAGAAGACAAATAAGACACCATGTTC
TTCCACATAAGTTAAGAAAATATACATCATTGATCCAAAATTCTTATGGCTGAGATTAAA
CGATATTACTTTATGTGCCTAAAGTTATATGTGGAACCGACACGTTCAAAGTAATAAGTT
GGAAACATGAATAAGAAGTTGGAAAGAGGGAGCAGATTTTTTCAGTACTTCGGATTGGCA
TGAACATAGCACATACATATTGATGGTGGGAAGCTAGAGCAAATCAAACAGTTTATTTTG
CAACGAATGTGACATGGCAAAACCTGCATCCTGAAATTGCAGCAAAAGTAGGAGAAACAT
GACGGTGAATCAACGAGATTTACTTTATGTGACATGTTTGAATCCTTACCAAGTAACCAG
CGTGTTGAAGTTCTAAATTGAAGGTTGATCGACTAATTCTGGCTGGCATGGAGGGCCATC
TCTTGAGTAAATAGGCAATTTTTGATTAAATAAATCCATGAAATAATCATTATCATGGTA
TTAACAAGATTAATGCCATATTGGTAACGAAGCAGACTAGCACGTACTATACATATAGTA
CAAACATCTACGCATATAACTAGTATTGTTAAGACTAAAATATATATGAGCGGGATAAAC
GAGTTATACCCTTCGATCGGCTAGTTGGCCGTAGCAGCAACAGTGACGGCGACAATATCA
TCGGCCGCCTTCTTGTCTGCTTCGGTCTTGTTGAGGGCGATGTTGTTGGTTTCGATTGGT
GAAGACATGGCGATGATGAAGGTGATGAACAGAGACGAGCAGTCGTGTAGTCGCTTTCCA
AAAACCTAATCGTCCATATCCTGTACAGGATCCAGAGAGGCGATGTTTCGAAGGCCTGCT
CTCCCGTCGACCGTGTACGCGGTGAACAAGACGTAGTCGCCGACGATGGCAGCAGCAAAA
GGAATGAGCGCGTGGAGCAGATGTGATCTCTTCATGACGGTTAGGGTTGGCAAGAGCCTC
GCTTATGTATGCGCGACCAAGTGAAGAGACGTGGGTTCCCATGTCCGAGTCAGTAACGAT
CCACGATCCAATGTCTCAGATTGTGGCACGTCTGTTACGTATTCTTCGTTCCTGATCGGC
AAAAATAAGCGTGTAGATATGAGATCGGCTCAGATCAATTCCGCAACACGCGACGCATCG
TCACGAGGCAGGCGGCGGAGGAGGAGTGCGCGAGGGCCTTTTCTCTTCTCAAGATCCAAT
AGCATGCGGAAGAGAGACTCTTATAAATATGCCCAACTCCTTCTCCACTAACAAGGTGAG
ACTAAACTTTCCACCATCCCTTGTCATGCCGCCACTTACATGGGCCCTTAGATATTTTTT
TGAAATTATCTTATGGGTCCTAAGCCCATCTCACATTTCAACAATACCCCATCAGATCTC
AAGGGCACATTGTGTCCTCTTGTTCCAATCACTATTTTGATATACCAGCATTTCAGTGAA
GATCTGTTAAGGTTGAGTTTCACCCAGTGCAAGTAGCTACACTTCTTCACAACTGAACAA
TGAATTATGCCTTGAATTGTCAGTTTGGCATAAAAAACTTTCACCACAAGTCTAACTTGT
ACTAGGTTGTCGAAGGATAACCCCTTGGGTGGAGCATATTAGTCACACTCCTAGCCTATT
CATGAGTTTACTAGAGATCACCTCAATCTCATAGACCGTGACCAGCAGTCGGGCTCATAT
AGGTGTGTTCCTCCAAAGATCGCAGAGGGACAACATCTTGCTTACACATAAGCTTTAGAA
CACATTAAGACAGTAGTCATCCTACCCGTACAATATCCGAGAGTATTGCATCTCCAACAG
AGTGAGTTAGTAAAGTTACTCTCCTTAATTCATCACTAGCTTGTTTTGGTAGGTCCTACT
TCACGGGATTTCCGATCACATAAGTTGGATTACCACCATGACAACTCATGTGGGTCTCGT
ACCCATCTCCTTTGATGCGTTATCTATCACAACACATGATAGCCCTTTAGTAAACGGATC
TGCCATATTCTTACCGTTTGGATGTAATCCAACGCAATCACTCCGGAGTTTCTCAAACGT
CTGACAGCTTTCAATCTCATTCTTATATGTTTGTTGGAATTCATGTTGTCCTGTGAACTC
TTTACTTTGACAATAATTGTCTGATTACCGCAGTTCATAAGGATAGCCGGAACCGCCTTC
TCAACCACACGCAAGTCTATCCAAAAATCTCAAAGAAATTCTGCTTTAACATCAGATGTG
TCTAATGTTGTTAATTCTGCTTCTATTGTCGGCCTCGTTAAGATCGTTTGGTTACAAGAC
TTCTAGGAAACAACACCACCTTCAAGGGTAAACATATACACTTTATCTCATCAGCATGAG
AGATCCAATTTTCATCAATATACCCTTCAAGTATCGATGGGTATCCTGTATAGTGAAGTC
TGTGGTTCATAGTACCTTTTAGATAGCGCATAATTCTTTTAACAACATGGCAATGAACAT
CGCCCCGATTGGCAACAAATCGGCTCAGTTTGCTCACAGCAAACGTGATGCCAGGACTCG
TTGCACTAGCTAGATACATAAGTGAACCAATAATTTAAGAGTATCTCAATTGACCTTTAG
TTGTGCCTATGAATTTTCAAACCGGCACACTAGGATCATATGATGTTTGAGAAATTTTGC
AGTATGAATATACAAAGCGACTTAAAATCTTCTCAACATATTGGGATTGCAGGAGTGTAA
TTTCATCCTCATCATCTGTCAAAAAGCTTGATGTTTAAGATAACATCAGGCAACCCAAGG
TCCTTCATTTAAAAGTTCTGAGACACTAAAGACTTAACTTCCTCAATTACTTTGAGTTGA
TTTCAAATATTAGTATGTCATCAACATACAAGCACAGTATAAGTCCTCCGCCCCCACCAT
GGAGATAGTATGGTGTGATTCCTTCGATTTTGCTTGAAAACGTGCACACATGCAAACACT
CAGCATTCTGTCTGGCCTAGATGCACATAAACAC