morexGenes - Barley RNA-seq Database

Contig contig_45048

Source Contig contig_45048

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_45048 (5171 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_45048

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61056	1	288 bp	MLOC_61056.1	Available	Available	None
MLOC_61055	1	292 bp	MLOC_61055.1	Available	Available	None
MLOC_61059	1	802 bp	MLOC_61059.1	Available	Available	LOC_Os12g29670.1, FRAME:-3, EVALUE:2e-38, 13112.m03018 protein expressed protein
MLOC_61057	3	1082 bp	MLOC_61057.1	Available	Available	LOC_Os02g34570.2, FRAME:-3, EVALUE:4e-29, 13102.m03746 protein exosome complex exonuclease, putative, expressed
MLOC_61058	1	723 bp	None	Available	Available	None

CDS Structure of MLOC_61056

CDS Structure of MLOC_61055

CDS Structure of MLOC_61059

CDS Structure of MLOC_61057

CDS Structure of MLOC_61058

Contig Sequence (5171 bp)

>contig_45048 5171 assembly3_WGSMorex_rbca.fasta
CCCCCGCCCCCCAAGACCAGTTCTTTTCTTTTCTTTTCGACTGGAGCTTTTGCATAAGTG
GCTGGAGATGGGCTCCTAGACGGAACGGCAAGGCACAATCGGAAACTATAGGAATGGCAT
AGCAAAAGATAGCTCTATTACTCGTTGTTTAAAATCTACTGTAATAATGTACCACTGTAG
CACGTGCACCATCATCAAGAAAATAAGAAAGCTAGCTAACTCTGTCTGCAACCAACCATC
ATGCAGTTAAGACCTGTAGGCTACAGTCAATCTAACTCTTGCCATGTTGTTTCTTCTTCC
TTTTATGTTTTGGTTTGACAGCATCTATTAGACTCTCCGCTGATCTGCTTTCCTTGACCT
CATCCGACTCTCCAGCACTTCCAGAATTTGATACAATTTTCACCTCTGGATTAGATTCAG
TCAACATTGGCTCGGCGTCCTCATGCTTTTCGTCATTTGCTACAGCTGGTGGATCTGCAT
ATTGCAAGGAAATTTTCCAGAGTTCAGAAGGATGTGTATGCATGTCATAACAAAGAATCG
TTCTTGTCCAGTTAAGAGAACAAAAAATCCAGAATTAGTTAACTCAGCCGAAGCATGCTT
ATCATACGGAACACATGTTTCAGCACTTTTAGTATATCATATTTCATGGCTAGTGAGGAT
TAGAACTGAAAACTGAAGCTTGGACCCACTGTCTGGAAATTCATTATAGGTAGTAAGCAC
TCAGATCATGCAATTAGACAAAAATGAAAATAACTGGCAAACACAATTCACAGTACCAGG
CAACCGAGAGATTTTGAGGGAGCTTAATGAAACTCCTTTGGAGTATGGACCCCTACATTG
CAAAAATCAGGATAGTTGGCAAAACTTATATCAAGCGACTATTTAATGCTCGGATTTAGA
GAAGTGCAGCACTCCAGTAGCTACCAATTTGATGGGACACCAATGAACATGGATGTTTGT
TTGTGTTTAACAGTTCGGTCTGCAGTCAAGGGTGAAACCATTTTTGTATTTTGATGGTCG
TAATCACCTTCACTTATCTGCTGACCATCATTGAGTGCCTTCGAGGTTTGGTTTTCCAAT
GCACCATGTGTGCTCTCCTTCATAGTGACATCAGGAACGTTAACTTCTTTAGCCACTGAT
GCTGGAGTTCGCTTTACTTTCTGCAATGCCTTTTCAGTAGTGTACTGATCAACCTGGACA
AAAAGGAATAACATGGGTTTTGATCCTTAGAATGACATGCATATCTGATCATTAAAATAG
AACAAAGTTCAGAAAATCACATGATTACTATGCACCAGGCTCATTCAAAGAGTACTAAAT
ATATGTTGTCGAAGTTCCATTAATAAGGGACTTTGAGCAGTGCATATGTTTTACGGCCCA
ATTTTAGAAAACCCAGTAAGTCAGCTCCTCCATCCTTTCCCATTCTCATTCTGCCTCCCT
TTGCTCCAACTATGCAAGCGCCGCAGAACAGGAGATAATGACTGTGCCGCCACATGTACT
TTCTTGCTCATCGGTGGCTTCTGCCCCTATCTCCTTTGCTTGAATCTTGCTGGCGGACAG
AGTCCCCATCTTTCTCCCTGCCCAGAGCTTCTTTCTTGTTGGCAGCGACCTTCCTTCATC
CCCACCTGGATCTCCTTCGTCGCCAGTGGCCATCATTCCCATCTCCCTCCCTGCCCATAT
CACAGCCGTATCTGCCCAGTGCCCGGTATCCCAGCCTATCGCTATTTGTTTTACTTCGTT
TATTAAACCAGAAACAACAACAACAACAAAGCCTTTNGTCCCAAACAAGTTGGGGTAGGC
TGGTTTATTAAATCAGAAAAGACACGCCTAGGCTCTAAGGCGGTAGCAAAACAAGCAAAA
CGCTTAGCGCTTGATGCGGTTAATGTGTACAGAATTGCGCTTAAGCGTGCACTTTGGTCA
GAAAGGTGGCAAAACATGCAATTAACGCCTAGCCCTTTTTATAACTTTCAAAAAGGATAC
TTGGGGATACATGTATCCCACGTATCCCTGTATTCCGTACGTACTGCACAGGATCACAAC
CGATGTTGCCATATCGGTGCTTTCTAATTGCCATGTGCCTGACCAGCACAATGTCAACTT
TCCATTCCTATCATCGTTTTGTTACCCTTTTCAAGTTAGATACGGGTTTCAGTATGAAAC
TTAATGGGTTGATTAAATACTTTACATGTCAGAGTGGTTAACCACAAATCCATAATTATA
GAGTTTATGAACCTCATTCCCAGTTCACAACCCCTGCTATAGTTTCATATTTCATAAAAC
ATTAAAGCAGATACCAAATTGTAACGCCATATAGTGATACAGCTTGACTTGCCTTGGTCG
TTATTTTGCTTGTTATATCAGCAGCTTTAACCGAAGCAATCCTTAAACACTGCATGATAA
CACTTGACATGACACCCTCTCCACCAGCTTTCTGAATGGCACAGACATCACCATTCGAGT
TGATTGTAGCTGTCATCCTTCCTCCCATAACAGCTTCTTCCTTGTATGTTGGATCGATAA
CCTACATGCAAAAAATTCAGCCAAATATTGTTGTCAGAAGATAAGAGCAACATGATAATT
GCTATGGCACGCCTTCATATTTTGAAATATACCATGATATTACCGTCACCAAAATATGCA
AAGGTTACAGCTATGGGGAGATGATGAATTGTTAGGGGAAGTGGATCCATGACCTGTGAA
ATACATTAAAGGTGAAAACATAAGATAAATTTCATGGCAGTGTAAATGACAGGACCAGCA
TGTGATAGTTATTAACAGGGTTGTGTTTGTGATACATATTACAGGAAGCTCTGTAAGTCA
TATAAATTTGCTACTTCTCATTATAGCGACACAACAAATTGGAGAATATACAATATAACA
CCTTATATAGGTACCTCAGGGTCATGTACTGTGACTTGCTGACCATCATCCCCACCAACC
GTGCATTCAGGCCTCCGGAATGTAGACAAAGCTGCCAATGCAGCGATGTTAGCTGCATCA
ATGAGATTCCTGAGAGATACATCCATACCATTCCACGCGGTTAGCACTCTACCCAGAAGC
ATTCACTCACTAATTACATTACATCAGTAGGCAATGTACAACCCATTACCCCCCATTGTC
CAGAATGTGAAGGTCGACGCGCAGCGACCAGACATGCTTCCCGGCAACAACACACAAGGA
TTCCATATCCACGGCTCTGCTCTCCCTGCAACAACGCACCGACCAGAAATGAATCCTGAT
TAAACTCCACAGTTAAACTCTCTGGCAAATAGAAATACTACTACCAAACAGCCATCCAGA
GACCACCTTAGGCCACGATCGATGACACGGCCCAGCTCAATCGCCGCTTCCCCGGGTCGT
CCCGGCTCAAAGGCAGGATCGGCCATGGGGGAGAACTCGGTGAAAATGGCCAGCGTGCCC
TCGTTCGGCCTGTCCTTGTACGGCTGGACTAGTTGGGCGGTCACATAGCCCATCACACAC
GTCTCGCCTAGCAGCACCTCCGCCGAGCCATCCTCCCTGCAGATTTCAGCAGCGACCTCA
GCCAGACATTGACGCGCGCGCGAGCAGAGGAGCTCCCTGAGCTCAAACCGTCGGTCGGAG
AAGGGGGAGGGGATCGAGTCTGAGGTACCTGCCGAAGGAGATTGTGAGCTTGCGGAAGTC
GAAGGGGCGGCGGCCGTCGACTCGGAGGTCCGACTGGAGGGCCTGCTCGATGAACTCCCG
CTCGTTCACCGTCGGGCGCCACCGCTGGTCCATCATCTCGTCGCTCGCCGGCGGCGGGGG
CTAGGGTTTTAGACGCGGCCGAGGCGGGGTGTGGTGAGAGCTTGTGTTTTTTCTTCTCTA
CTTTTTTTTCTGAGGGAAAATTTGTAACATTCGTTGTGTTTTTGAGCGGCTTGGGCCGGT
GCGGGCTGCGGCCTAGCTGGTACGAGGACGCCCTGAGCTCCTACGTAGGCTGGATTCAGT
AACGGCCCAAATACCACATAATTCATATGATATTATGTTCATATTTCGATAATATATTCT
TACAAATATTGTTGAATCAAATTTAAATATTAAGGAATGTTTGTATTCTCAAAATATTAT
ATGTGAAAATAAAAATACTCATTGTGTAATTGAAAATGCTCGTCGTGAATTTCAAATTAT
TCACTGTGTACTTTTAAAAATATTCGTGAGCGTAAAATACTATATATGGAAAGAAGAAAG
AAAGAAAGAACCTGGAAGAAACGAAAGAAAAAGAAAATGGACAAAAGAAAACTGAAGTAA
AAAAAAAAGGAAAACCTAGAAGAAAAAAAGATAAAGCACACCCTTAAAACCTGGAAAGGA
CAAAAAAGGAAAGAAAATCAGATTCACGAGCGGTAATGGGCCCTGACCCATTATCCTAAA
TATCTGCATAATATTCTCGATTAAATCGCTAGTCCAACATAATCACCTGTCATCGACCCC
AGGAACACATAAGGGATTTAGATGGCCTTTCAATTGTCATCTTTACTAACACTGATCATT
GCTTCAATACATATTATTTGGAAATAGGAAGAACAACAATGTTTCCAAAGGATCATGACT
ATTAAACTCAGGAAATTCATCAAAGAAAACCCACAGTAGGACACATTTCACTTATCCACA
TTGGTAAATGAATCAGTCAAGCTTTCACCCTCTACTGAAGCATTTGTTGCAAGGTTCTGC
GCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCTCTCACACTGGCTAATGCCCATG
ATGATGTCAAGCATAGTTCCAGTAGTGCCAAAGAACACGAGCGGAGCGAAGGACTTCCTC
TTTATGCCCACAGGAATGGCAAGGAGAGCACCAGCAACAGAGAAGACCCAAGTTCCGAGG
GCACTGCATGCGCATGCAAAACTGTATCAGCATAACATGTTCCAAGCAAAACTGTTGCCT
CAAGAGCTGCTGGTTATAGCCTATCCTTTTCTAGACATATATATGCAAAGTTTACAAAAC
TACACATACCATTTATTGGTGCTGACTTTAAGTACACGGTAAGTTCACCATCTCACATAT
TCCAAGCAAAGTCTACAAATCTACAGCGCATGTTCACTGGACTTTCAACTGAACACTGTT
TACACAATTCATTATTCTAACATGGCCGTGCACATTGTTATGACCGGTACAACGTACCAA
CGGAGGAGGCC