morexGenes - Barley RNA-seq Database

Contig contig_45027

Source Contig contig_45027

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_45027 (7907 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_45027

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_61039	1	740 bp	AK375833	Available	Available	None
MLOC_61037	3	2467 bp	MLOC_61037.1	Available	Available	LOC_Os07g06080.1, FRAME:+3, EVALUE:0.0, 13107.m00572 protein FAD dependent oxidoreductase domain containing protein, expressed
MLOC_61038	2	3214 bp	None	Available	Available	LOC_Os08g02240.1, FRAME:+3, EVALUE:1e-17, 13108.m00161 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_61039

CDS Structure of MLOC_61037

CDS Structure of MLOC_61038

Contig Sequence (7907 bp)

>contig_45027 7907 assembly3_WGSMorex_rbca.fasta
ACTAGTTTTAGCCTCTCTTTAGTCAGGGGTGCTTGAAACTTTAACCTCTTAAAGAAACTA
GTTTTAGTCTTTTGGATCCAAGCACCCTCTAAGGTAGGTCGGTCGCTAGGATCAAAAAAT
GTCTGCACGGTTGAGTGCGAATAAGGTAGGCCGGTCGCTAGGAGCAAAAAATGTCCGCAC
GGTTAGGTGCAATCCAAACACAAGAAAGGACGAGCGACAAACTGAGAGCAACTCTAATGG
GGCTACTTATTTTATCCGCTGCCGTCCATTTGTGTCGGCGCGGACATAAAAAGCAGCCCA
ACGTATCGACTCATTTTGAAAACATGTCCGTTCTACGTCCACGCCGACCATTTTCGGCTC
AAATTTGGGACTGGAATGCGTCGACGCGGACGCGCGCGCCCCTTCGGTGCTCGCCCAACC
ACCGCGGTCAACATAATTTATGACGACCGCCCTCTTCGGGTCCATGAGTCAGCGACCGTG
GTCGGCCTTTTTTAACTCGAGCGTGCGGTGGGGTTCGATCATCTGCTTCCAGAATCCTCC
CCGCCCCCATCGCGCCGCCCCTATGTTTCCTCGTCGACGACCCAGCAGCCATGGACAACG
GCGACAACCTCGTCGTTTATGCCCGCGTGATGCTTCCACAAGAGGTCGCCTACCTGCAGG
CTAAGAGGGCTATGCGGCAGGCGCACGAGCGCGCCCGTGCTACGACCGGCTTCTTCCAGA
ACACCCTCGTCGTTCACTCCCGCACGCTTCTTCCAGAGGAGTCCGCCTACCTTCATGCTA
AAATGGTGTCGCGCCTCGCGAACGAGCGCGCCCATGCTGCGCCACCGTCGACACTAGCAC
AGCCCGCCCCCGCTCCTGCACAGCCCGACCTCGCCGCCGCCGCCGAGGACGCCTAGGGTT
TCTTCTTTTTTCATTTATAAAATTTAACGCATGGACTCTCGTCAGTCTTCGTGACCGGTT
TTTAATGTTTAATTGTGCATGTTTGATGCACGCCGGTAAAAAATTGGATCGAATCAGTGT
TGGACGCATGCGCTGACCCAAACGTCGAAGCAAACGTTTGTGTCCGACTGTTCGATCCAA
ACGGACAAAAAACGGATAAAATCGTCATCCGTTTGAATCGACCCGTTGGAGTTGTCCTGA
TGATCCATTCATTAAACGGATAAAAAAAGATAAAACGGGGGACCCGTTGGAGTGTTCCGA
TAATGGGCACATAGGGAAGCGGTAGCAAAGATTCCGATGCAGGTTTGTGAACACGCCCGC
AGGCCCAAATCCGGAGACATGGCAAGCGCGCCCCCCGCCGCGCCGCCCCGCCGCGTGGTG
GTCTGCGGCGGTGGCGTTGTCGGCGCTTGCACGGCGTATTTCCTCTCCACCCACCCCGCC
TTCCCCACCGTGCCGACGCTTGTCGAGAAGTCCTCCCCCGCTTGCGCTGCCTCAGGCAAG
GCGGGCGGCTTCCTGGCCCTCGACTGGAGCGACTCCAACCCCGCACTCTCGGCGCTGGCG
CGCGCATCCTTCGGCCTCCACCACCGCCTCGCTGCTGCCCTCGACGGCGCCAACGCGTAC
GGTTTCCGCCCTGTCCACACCCTCTCCATCTGCCTCCCCTCTCAGCCGGAGGAGCCCCTC
TCACCGCACCCACTCCTCCCTTCCTGGGTCGACCCCTCTGCCTCCGCCGCGCCACCACGC
CAGCTCGGAACTCCGGACACCACCGCGCAGGTCCATCCGGGCCTCTTCACCAAGGCCGTC
CTCGCCGCGTCCGGCGCCGAGGTGGTCATCGGCGAGGTGGAGCGCGTGGTGGTCCGCCAA
GGGGAAGGGCGTGTGGTCGGCGTTGCGGTGAAAGGGCGCGGTGTGGTGGACGCGGATGCC
GTGGTGCTCGCCCTCGGCCCTTGGTCTGGGCGTTTCGAGATGGTCAAAGAGGTGTTGGAC
GTGTCCGGGCTCAAGGCGCACAGCATCGTGCTCCGGCCGCGCAACCCCGACAAGATAACA
CCGCACTGCCTGTTCCTGAGCTACCAGCCGGAGCCCGGCGCCAAGATGCTCGACCCGGAG
GTCTACCCGCGCCCCACGGGTACGCAGTTCAAGCTCAATTACACGCGTGCATCAAAGTCA
AACCACCCATGTTTACACATGTATTCATTTGAGCTGCTAAAACTTCATATATTATGATAC
AGAGGTAGTAAAAAAGAAAAGAAAAATGCTTACACATGTACGCTTGTTGCTGTTTGTCCT
TGAACAGGGGAGGTGTACATCTGCGGAATGAGCAAGGACGAGCAAGTTCCAGATGATCCG
GCAACGATTGCCGGGGAGCCTGACTCCATTGCAATGCTTCATAAGATTGCTGGGAGGGTG
TCCAGCCAGCTCAAGACAGAGGAGGGCGCAGAGGTAGTCGCGGAACAGGCCTGCTACCTC
CCGTGCACCGATGACGGGCTGCCGGTCATTGGGGAAATGCCCGGGGTGAAGGGATGCTAC
GTTGCAACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGTTACCGGTGCAGCACTC
GCCGAGCTCATCCTCGATGGGCAGGCCAAGATCGTTGATCTTGCGCCCTTCAGCCCGGCA
AGATTTCTCAACAACAAGAAGAGCAGGCGCGGAGTGTAATGTGATCCGAGGTTCCTGCCA
AACTTGGCAACCGAATAAAAAGATACTCCTACGTATCCTCGCTTGTAACCTGTCCGAGGA
GGGGACACCAAATCAAATAATGTACGGATAAATAAACCTACACCAAATCAAATAATGTAC
GGATAAATAAACCTTCAACACTTACTGTCGAGTGTTGTAGAGATGGATAGATCCTGTTTT
ATCTGATGATGTGTGTTCTATTCCCTCTGTTTTTTTTTTTTGAAAGAATGTTCTATTCCC
TCTGTTCTTAAATATTTTTATTGTTTTCTTCAACAAGTATTGTGATACAAAGGGAGTACA
TGTTACGTTATCTGAGATAAACGAGCCAACATTTTGCAGACTTGAACTGCAACTACACTC
CCACAGTGCTGCATCATCATGAGCAGAATGATACTTTGAAGTTTACATCAAACACGTGAA
ACATAACATCGCACTATTACGTGTTCTAGCAGTTATCAGATATCTGTGTCGTACGATAAC
CCTAGGATGCAGCTCCCAAAATGAACAGCCATTGCCAGTGTTACACTATCTTCACCACAT
CAACTTGTTCATCTTTCACACTCAAAAAAAATAAAAAAAATGTTCATCTTTCTAATGTTT
TCAGTCCAAGTATAGGGTTGCCTTCCTCACCGCATCAAATGAGGTTTGCAGCCTCCAATC
TCTCTGTTTCCTGTTCAACGGCCTCCCTTTCCCAGCCCGGTTCTCGTTGACGTCCGCGAG
CTTCCAAACACAGTGTTCTGTCTGAATGTCTACTGACTCGAGCATGAAGATACCATCCAC
CTGATCCGAAACAAGGCCATCACCTTCAGCAAGGTATTGTACCCTCATTGCCATATCTTT
GAAGCGATCCAGATCACCCGGCACCTTCAGAAGTCGCTCTGCTCCTGGTGATGAGATCTG
AAACACAAGATTAATTCTTCCTAAGTGCTTGCAAAATTTAGGAGCAGCCATTGTGTAAGA
AATTTTTGGCGGGCTGACTTGCCTCAAGAGCCAGGTCCAGGGGTATTTCGCCTCTTTCGA
TTATCTCATCCAATTTTTGCTTATAGAGTCTATTGAAATTCTCTATTTCCTCTATACCAG
GGCACCCATACCTGTAGAAATTTCTCACACAGCTAAGGAAATAAGATTGCCATTTTGCCC
ATATCAGTTTCAAGATAAACAGCCTATTCAGATCAGGTTAGATGGAGAAAACATTTTGGT
GGTAGCAATCTACTCAACATTCAACATCACTAACGCAACAAGGCACAACGCTGCAATGAA
GACAGCCTGCAAGGCTGCAACCATGCACAATAACCAGTACTATCTCTGTTCTTAAATATA
AAACTTTTTAAGAGATTTCACTATGGACTACATACGAAGTAAAATAAGTGAATTTACATT
CTAAAGTATGTCTATATACATCCGTATGTAGAATCTCTTAAAAGACTTATATTTAGGAAC
GGAGGGAGTAGGTGGTAGCCATAGGAATTTTGACATGGAATTTTTTTGGGCATTAACTAG
TCTAAGTGAACAGACAGAAAAGTAGGTACTACTTGATAACCTAAAATAAGGATCTATTCT
CACACAAACATCAGCCTGACTCCATGGTTACGAAGCAGTACTGCTGAGACTAGGGCGATC
AGGCGATGCCACCCGAGGCGATCGGCCAGGCCACCGGTGAGATTCCCGCTGGGAGGGTCC
CGAGGCGATCGGCCAGGCCACCGGTGAGATCCCTGCTGGCAGGGCTCCTCAGGCAATCGA
CCGTGCGATTGGTGAGATCCCCGCCGGCGGGGAGAGCGGCTGGGAGATCGGATCAGATAG
ATCTGATGGCGCAGGAGGTACACCCACGGCATCTCATCGTCGGTGGGAGATCTCCTATGT
GGACAAAGCGCTGGATTCAAGATCCGAGTGTCGAGGATTCCTCTATCTCCACCAGGGTTC
ACGCTGGATAACGGTGAGAGTTGATGAAAATGACATCTTGACAGGAAAATATTTGCAACA
ACGCGAGATTCTCAAGGAGGGGTCAGAGGTGGAGATCGGTGGATTCCTTGTGTCCGTGAG
GAATCCATGGACACCGAGAAAGATCAACATCGAGCCGGCCACGGTATGTGATCTTACCAC
TAATTCTACTCGGGTTGGAGGCCGTTTTGGGGTCTTGGCTGACCAGGATGAAGAAGATGA
AGATGGGGAAGGATCGGACACCCCTTCGTTTGATGATCTTGTGAGGTGCAACCCCAACTT
GATGCTGCCGGCTACGGTCATGCATGGTAGTAAGGCTGCATCAAATATTCATATGGTGAA
GAAGAAGACCGGAACGGCTAGGGGGATTAAACCATGGATTGGACCGATCCCGAAGGTAAA
TCTTCCGCTCTTTACTCTTTCAGATTTATTCAATCAAGAATGTTGGAATCTAGTCAAAAA
AAAGAAGAAGAAACGCTGCATCGCCGCTCCGCCGACGCCGGCGCCGGCGATGGATCATTC
AGTGCGCGATTCCAGGAGGATTTTTTTGAGCTCGTTAGGCGTCGGTTGCGGGCCTGAGGA
GAAACTACCAGGTTTGGGTTTTGTGGAACCTGGGTATATGGCCCAGGATGAAGCCCAAGC
CTGTGTCGAAATTCCTTCATGCTTTGTTGATGTAGCGTTGGAGTCTTTGGATCAGGCTGA
AGCCCATGTTATCGTCGCCGCATTGGAATCTTTGGATCAGGCCGTAGCCCATGATAGCGT
CGCTGACCTGCCATGCAAGATCGTCGTACCGCACGAGATTAGTCTCCTGCCGTCAGGGAC
TAGGGTTCCTTCGCGATCTAACAAAGGTTTCCCTACGATGAAGTCGGGAAGGGCGGCACG
TATACCTCCCGTCAGGGCTTCTTCGGGAGTCATGGCAGGCCGGGGCCATCCCCAGCAGCC
GCCTACAGCGCAGCCCCCTCCTGCGACGAGCGCGCTCGTCGGGGCAGGGAAATCGCCCTC
CCCTGTCGGCTGCAAGGACTGCCGCTTCTGGCGCGTCGGCTGGCGTCCAGGCTTTGGTCG
AGGTCAACAGACAGCAGCCGCGGGGTCGATGGGGCGATGATGGGGTCAACGCATAAGGTG
ATGACCAGCACTGAGGTTCTTCCTCCTCGGGTGGTGGGCGTGGCTACGCATGGCAGAATA
ATGGTGGAGGAGGCGGTATTGGGTTCAATGCACTGCCTGGCAAATTTGTGTCAGGGATAT
CAGGTCCCCCAAATCCGAAGAGAGGTGGTTTTGGACAGGGCTGGGGTGGTAGAGGGGGAG
GAAGGAAGCCGAAGCCTCCTATACCTCCTCAGGATGCTCCTATGGAGAGAGATGACCCCA
ACAAGGTACCAGCAAAGGAGGCGGGCAAGGATGCTAGTCTCATCCAGGGTCATGGCAATG
AGGCTGATCCTAATCCGGTCGATAAGAGTATTGCTAATGGCAAAGGGGAAGGAGGTGATA
GGCCCTCCATATGGGCGCGCAAGAAGGAGAAGATGACGTGTTATAGTGTTATAGATGCAG
TGAGACGGGACATTTTGTTTCTGAATGCAAGGCTGAGCTTTGTGACTTTTGCTTGAAGCC
CAAGCATGGCACGGCTAAGTGCCCTCTTACAATCGGGCAAATGCCGGTGGTGACCGTCTA
TGGTGTCTGTTGTCAGGAACTGATGTTCTTTGAGTCGCCGGCTGTTACGGCGACGGTTCA
CACGCCGGATGCAGGTTTCACTAGTACTGTTACTGTCGCTCGTGGAACTATGACTGTTGA
GCAGGTGGTGCAGCAGCTAAGGGAGCTGGTATCTTCCACTTTTAGGTGGGAACCTGTTTT
GATTGCAGAAAATGTTTTCAAGGTCGTTTTTCCTACCAAAGAGGATTTGGCTCGTCTGCT
CAAGTTTGGCATGTGCAAAGTGCCTAGCACTAGCTGTGTGCTTGAGTTTGATGCCTGGAA
GAGTGAGGAGCCACAAGGAGTGCCTCTACCGCAGATTTGGGGTCGCCTCACGGGAGCCCC
GTCCAAGGCGATCAATGACTTTCTGGTTACTTGGAGCTTGGGGTCGCTCATTGGAAGACA
AAAGAAGTGGAAATGGTGTTCACTAGAGCTAAAGGTATTGCGAGGTTGCTGGTTAGTGTG
ATTGATATTGAGCTAGTTCCGGATGAGGTTGTATGGACTCCTGCGGGAATGCGATATACT
CTCCAGCTCGAGATTGAGAGTCCTCCGCTTTTCGATGAGGGTGTGACGGATAAGGACGTC
CATATGACGGATGGAGATGATGCTGCTGGTTCAAGGGAGTCAGGAAAAGATCATCAACCG
CCTGTGAACACTAAGGAGCCGAACCACACACTGTCTTCACCGAAGTCTGGTGCAGGGGGT
AATCGCTCGGCTAAGGCACCTATGGACGAGCCGCGGTTTGGCTCTTTTGAACCCTCTTCC
GCGTCAGCTAGGATTGGAGGAGCACGTGGCGCGGCGGATAAAGATGGCTGCTTCGGTCTA
CGCTGCCTAGGTATCCAGGGAAGAACCCACGGAGTATGGCTGATCTTACTATCACGCAAG
CTAGGCAGGTGCTACCGGCTGTGTCGTTGGGGGAGTATTTGGCAGGCGCTAGAACTGCTG
GCAGCCTGGCGCTCGATGGAGGCGCTACTTCTAGCGCTCAACCTCCAGCCGCAAGATCAG
TGGATACGCTGGCGCCGGAGGTAGGTGTGCACTCGAGCCCATCATCTTCTCTGACTACTG
CACCGGTCCTTGAGGAGGGTTTAGAAACGCTGTCGACGGTGGACACGGCGAGTGCACATG
TGGCGGCAACTGAGCTAGGTGTTGCACAGTTCTCTGTTGAGGAAGTTATAGCATTTGGAG
GTATTCTGAATCCGTCGACCCAAGATAGAAGGTCCAGTCAGCGGATCCAGAATCAGCCAG
ATGCGGACGACTTGCAGATGGGACGTGCAATGCGGGCTGCAAAAATGAAGGATGCTGAAA
ATTCGACAGGTATGACAATTAACACAGACCATTCCATTCTTCATTTTTCACCGAATGAAA
TTATAGATAATGCTGCTTCGATTGGGGTTACATTGGGTACTACGAGTAAAGAAGTTTCGA
AATCCATTAATAACCTATTAGACTTAGAAGTTGATAGGGCTTTAGACATTATTCGGAACT
TAGCTGCAGTGCAACCAATGAAAGATTCTGAGATCACTAAAATGGGGGGGGGGGGGGGGG
GAATTTGCTTTGCGAAAATTTCCCCCCAACGGATATTTTAGGGGGGGGGGGTGATGTCTT
TTTTCTTCAATTCTTACCCAATGGGCCGCTCTCGGCTGTCGTCTCAG