Map Locations of contig_45002 (10960 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_45002

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_61013 1 1052 bp MLOC_61013.1 Available Available LOC_Os08g44190.1, FRAME:+2, EVALUE:2e-32, 13108.m04791 protein ZOS8-13 - C2H2 zinc finger protein, expressed





CDS Structure of MLOC_61013






Contig Sequence (10960 bp)

>contig_45002 10960 assembly3_WGSMorex_rbca.fasta
GAAGTTATTACGCGCCATTAATGTCCATATTAGCTATAGCCATTTTTCTAGTAGTGATAT
AGGCATCTCCAAAAATGCAACCATTACAACATTATTGACGAACCAGGTGGAACCGAAGTA
AAAAACTCGGTTGCACCGACTAGTGCAAAATGTGGCAACTTTCAATGTTTCGTTGAGACC
CGTATATAAAACTCAATGAGTCCAATTTTTTCTGGCCTGGGCAGTTACATAGACTCGGTG
GCACCGATTTGTAAAACTCGAAGATTCTGACTTTTTAGCACATGGATACCAGGGAGTTGG
TCAGTGATTTTTGGTTGCACCAAAATGGGACTTCGTTTCACTGACATGTTATGGTTAGCT
CTAGATTATCTCTATGGTAAAACTTGGTAGGGACGAATCGGAAATATTGGTGGCACCGAA
TTTAGGCTTTGGGGTTTGGAATGAATATTTTTGTAAGAGAATTCATGAGGGTTTTTGGAG
GCTAACTCTAAACACTTGAGCAACCAGATCATCATAGNNNNCTCATCCCCTTTTAATAGT
ATTGACATTCCTATGGACTCAAATGTGATTTCTCACAAGTTGCAAAATATAGTCTTGAAG
CTTGATGAATTGCCAATCCTACTATAGTCATTCCTTGGGGCTTCTCCTCACATTTCGAGG
CAACAATATTTTGGACTCAATCTGAAACAGTAGGTAGAACCATTAGTACAAGAGATGATA
TATGATTTAATGAATTATCAAAACCACCAAGGGAGCATATGTTCTTTCATAACCTCCTCT
TGAAGTTCAATCACTACATGTGCATGATCAGCACCGTCCTTGGTTCTAGAAGCACAACAA
TCTTAGTATCTTGTCCAAAGCTTTCGTATAAAAAAATAGTAGCTTTAGAATAGTCCATAT
CAACCCAGTTAACATAGCCACAATTGCCAATCGCAAGACAAATAAGTTACTTAACCATCT
ATAGCTACAAAAGGTGAAATGGTACACGAGGGTAACTCCTTTTCATAAAGAAATTCATTA
GTTATCTATGTTTTTCTCTATCTCCTAAATTGGAAACCTAGCAGTTAAGCTACAGAAAAA
CAAGAAAATGCAAAGATTCGGAGAAACAAAGTAGTTAAGCTACATAAAATCACACGAATT
AAGCTTAGGAGAAACAAGAAAGTGCAAAGATTCAGACAAACAAAGCAGCTAAGCTACAAA
GAAACACACCAATTAACTATGTTTATCTTTAACTATGTTTGCACAAGTAAATTCTCAAAT
AAGTAGATTAAGGATATCTATCACTGCCTAAGCTCTTATTTCAAACCAATGTGACCATTA
ACAATTACAATGCTACAACACAGATAATTGCATTACTAGAAAATTTAAACATCCAAATAA
ACAATTCACATCATATTTCAAATAAGCAAAGCAGGGCATGCATTGCAACTTACTTCCTCG
CCACGTCCATAAAACCTTCTTCCAGTAATACTAACTTCAAATGCTACAAATTTTGCTGCT
ATTTTCCTATGGTACCACTCAACTAGGCCATTTGTCACCACATCACCTTTATAGTCCGGG
TCATCTATGGTTAGGAGCGGTTGGATTAATTTCAAAATGAATTTGGAATGGTCAAATGAA
CAGTATCCGGTCCAAATCATACCAAAAGGAAATTCCCTGGTCTAAAATCCATAACACTAA
CCCTAGGCGATCAGACAGAGTACAGTGTGGCGGTATTACCTCCCTAACGAGGTGCAGCAT
CTCGTCATTGTCGTTGCTCTCCTCCCTGTCTTTCCAAGAAGGCATTCCGTGATTGAGTGG
CGGTGACAATGAGATTGAGCGGCAGCAGCATAGAGCGAGAGTGAGAGCGAGAGGGAGGTT
GAGAGTGAGGGAGAGGAGCGGGCAATTCTTGCCATTTCAGGCATCTCCCGACCAGCTCGG
TCTTCTGGCCGGCTCGATCGATGGGGGCTATTAACGGTCGTTATTGCATGCGTCGTCCAC
ACTATCCATGTGGTCGCTTTGCCGCATAAAAACGAGATCTTTTTTGTCAGTGTTTTTTGC
CACTGTCATTTTTTCAGTGAGGTACAAAGTGTTATGTTTTGTAAAGTGGTGGTTTTCTAA
AGCTATGACGCGAAGGTGATGGTTTCGTGCGTTTTCCTGCTTGCTTTGCGAATAGGATTA
TTGGTTTGATCAATAAATACATCAAACTCTTCCTTTGGAGAATGTGTGGACATGATATCA
GATCAATAAATACATACAAAATTTCCTTTGGAGAAAGTATGGGCATGAGAACTGTGGTGC
AATGAAGGCAGAGAGGAAGCTTTGATGCATATGTTTTGGAACTACACGTGTGCACATGAC
TTTAGAAAAAACTTTTTTGGTAAGAGGCTAATAGGAATCTCTACTTTTGATGAAATTATG
ATTGGTTTTCAGAAACTGTCAAGGTCTATTGCATTTGACATCATTATTTTGGGATGCTAG
AATATTTGGACATAGAGAAATTGCAAAAAAATTAGAAGAGTCCCTAGCCATAACACCTGG
AAATACATGCTTAAATAAGATTTGGAATTATTGGGCCATAGACCACAGAAGCATAAACTT
CTTTGTTTTCTCCATGTTGCCTAGAGCTGGGATTGGATAGTTTTATTTTTCTTTTCTCTT
GTTGTCTATATGTATTTACTTTAGTTATATATTGAAAATACCATAGAACAATTGTTCTAC
AGTTTAGAGTGAAAAAAAGATCGGCTCCTGATCAAGCAGAATATTGCCTATCTCTTTTGG
GGCAACCCGGAATGAGAAGTTGAGTTTGTCAATTTGGTTGACAAAAACCTGCTCTTACAG
CCCACCAATACCCGATTGAAGGATCGTGGCAATAAGTGTGTGTTTTGGAAGAATTTGGCA
AAGTCAAAAGAAATTGGACGTGGCTAGCGAGTGCTAGGCGCTCGCTCGCATGCGCGAGCG
CACTCTCAAAAAGGGAAGGAGCCCCCCACGTGCCGAGTGAGGACAGCCAAAAAAGGAGAT
CACGTGCAATTATTAGCATTTTAAAAAAATAAAAAAGTCATAACTTTTGATTCGAGTGTC
GGAATTAGATCTGTTTTCACTATTGGGTTTCTCGTGACGAGTTCTTTCAAACTAGATATC
ATATGAATAGGTTTTGACAAACTTTTTTTCGAGCAACTTTGTGTGCTATAGAGGCAACTT
TAGTGATATAGGAAAGCAACTCCCCCCCCCCCTAGTATGACTACCTATCATCGGAGGATT
CTTCTATGTTGGTTACCATAACAGTTGACTAGATTCACCTCTAAAATCTTTACATATTAA
TCAATGGTCTTGGTAATGTTTCTGTTCATGAGGATTGGGTACATGGTTTTAGACAACTTG
TATGGTTGATTGTGGGCAACTAGATACATGGTTTTAGACAATTGTACGGTTGATTGTGGG
CAACTGGATACATGATTTTATGCAACATTATGGTTGACTGTAGGCGACTATGACTTCTAA
CCAATCAACCTCGCTTTAAAATTCAGATCCATTTTCACGGTTGGGTTTCTCGCGGCGAAT
ACTTCAAAACTAGATCTCATATGGATATGTTTTGATAAACTTTTTTGGGGCACTTTTTGT
GCAACGGAAGTAACTCGACTGCTATAGGGAAGCAACTCCTTCTTTTTTGTCCAGTAGGAC
TACCTATTAGGTTGGTTTGTGTAAAAATGATAAAATCACATAAAGCATGAGGTGTCTTTA
GTGTTACATACAAACAACTTCACTGCACTATATGTACCTATGAGTTTTGCTAACATTATC
CCAACTTGTGTATTGTGGTTGCTCAGTTGTCTATTATTGATGATCTTTGTCTACATGACC
CTCAATTTCCTACAAATAATATGAAATTGCCTACTATTGATGCCTAGTTGACTGTTGTTG
GTAATTAGTTTCCTACCATTGCTTCTCAATCGCCTAACTTTGTAAGTAAGTTGCCTACAA
TGTTAAGAAAAATAATGATACAAAACTTTTGTAGGTAACTAATGTGCAAAGTTAGAAAAC
TGAATAGCAATGGTAGGCAACTAAATACCGATAACAAGCAACTAGACATCCATATTAGGA
AATTTCGAAGTCTTTGTGGGCAACTGAGACTCAGCCGTAGGCAATTGACAAACAACGATA
AGCAATTGAGCACTGTTATAGGCAAGTTGGGATAATGTTAGCAAAAGTTCACGGGTACAA
ATAGCCTAGTGAAGTTGATTGCATGTAGAACTAAAGACGTCTCATGTTTTGTGTGATTTT
ATCATTTTTACACGAACAAATCTAACAGGCGGGCCTACTTGGCTAAAAAGGAGTTGCTTC
CATATAGCACTGAAGTTGTCTCCGTTACACACAAAGTTGTCTAAAAAAAGTGTATCAAAA
CATATCCATATGTGATCTAGTTTTGAAGCAAGAAACACAACCGTGAAACGGATCTCAATT
TTAACACTTGGTTCAAAAGATATAGCTTTTAGAAAAAAGGAAGGAAAGTAATTAATTGTA
ATGGAGGAGAGAACTAGTCGCGTGCAGGTTTCTTTTTTGGTTGTTCATGCCGCATGAGGG
TTTGCTCCTTCCTTTATTATAAGTTCTTAAGGGGAACGAGGGGCCCACCCTCTTAAAAAT
CAGGGGCCCACCCTCTTAAAAATCAGCGTGTAACCTTATGTAACTCTTTGTATGTCTAGC
ATTTTTGGGTGAGGCCCCTCATCCCCTATAATCAATCACAATGCTCCGCATCGGTTTGTA
TGTAAAATCTTTATGTAAACATTTATAGATGTAGCATTACTCTTTTTATTAGCATGCTCA
ATTAATGCTAGTCCTTGTATTTTTGTTTCAAAACTTGGGTGGTGCTTAATTTCTATGGAT
CGCCGTTGGTATGCATGAACCAACCAGTTGCACGTTTGGTAAACTTCAATGATTGTGGGC
GCGTGTGACTACCGTGGTCGTCAGATAAACCCCATACTAAGTCGTCGTCGTCGCATACGC
TAAGTAGCTATGTGCAGTCCAGCCTTTCATCTAGCTGCTCACTCACATCTCCTACTCCTC
CATTGCCCCTCTATATATACCAATCACGGCGCACAGCAGCGCTGTACATTTACTCGATCA
GTCTCCATATCGCAGGCCGCCAAGTGCAGGAAATGGAGAGCGCAAAGGCGCCGACCGGCG
AGGTGAACCTTGACCTGCGGCTCGTTCACCCACTGGCGGCGGCAAGGCGCCCGCACCCGC
ATACGCCGAGGGTCGCCGACCGGACCTTCTCGTGCACCTACTGCCGGCGCAAGTTCTACA
GCTCGCAGGCGCTGGGCGGCCACCAGAACGCGCACAAGCTCGAGCGCAGCCTCGCCAAGC
GCAGCCGCGAGCTCTCTGCCGCCGGCCCGGGGGCGCTCGCCTCCTCCAGCGCCGCGTCTA
CTCCGCCGCCGTCCGACTTGATCAGCTGGTACACGCCAGGAGGCGGGGATAGTGGGCAAG
CTGCAGGGTCGGCCGCCGCAGCCGCGGCCGTCGTCAGCTGGATCGCCGACGGCGGGCGCC
GCCGCTACGTGCGTCGCGTGCACGCGGCCAGCAACGGGGAGGACGACATCGATCTGTCGC
TCAAGCTGTAAGGTGCACGCACGCACGCACGCACGCATATGGACTAGCATGCATCTAGCT
TGTCCGTCCGTACGTTATTACAGATTTACAGTATAGTTCTACACTTCTACTTCTACTAGG
TGCGTCAGTTGTTTCTGTGCATGTATGGGACGACGTTATTTGTTGTTTAAATTCTTTTAT
TTATTCAAGTCCGGTTTGTTGGCCGGGTTGATTATATATATCAACCAGTATCCTACGTAC
ATATATAATAGAACTAGCTCTCATAGTAACCAAATCAGCAGCTAGCTCGGTGATGCAATT
TCTAAATCTGATAAATTCGATTCGATGCAGTTACGAAGTTCTTACTTGCTTCAGTTGCAA
TTTCATCACACACAGTAGTACTCCCTTCATTCCTAAATATATTTTTTCTAAAAAAGACTA
TGGACTACATACGGGCATATGGACATACTTTTGACATAGGTTTTCGCTCTGCTTTATAAA
TAAAACGCCAAGTCTACAACCAGAGATATAAATATAAAATTCACTGTCTGTTGGGGCCAC
AGCACAAGCAAGCCAAAAAAACCGGAGAAGAAATGGAAAAAAAGCCACCAAGTGATCATA
CATTAGAGTATAAATTCACTTATTTTATTCCGTATGTAACCCATAATAAAATCTTTAGAA
AAGACTTATATTTATGAACGGATGGAGTATATACATATACACGTGTGCTATTGCATGCTA
CTATCTCCTTTTGGAAATATTTTTTTTGGAACACAATACAAACGCAAGCGTTCGTATACA
CGTGCATACACTTATTCATATGAACGCACACACTGAGCCAACATGTCATCTTAAAATTTA
TGAAGTTATCTTAGGCGTCTCGTCGTCGACAAAAACGTCTTCTCCCACTGAAAACATATC
GTCGAAAATCATGAATTAAATTCAAAAATAATGCAAGCACAAGGACTTGAATCCTGATAG
ATCGGGAATACCACTATTCCTCTAACTATCGAATCACAGATTAGTTTGATCCTTTCAGAA
ATTTCTACCTTGTAGGGCTGTTGATGTGATCTGTAAATGAGCGAAAAGAAGGGCATACGA
GATCTATCTGTCAAGCACACAAGTTGGGCAGTCCGACTCAACTTACATATCCCATCCAGG
AGGTCTAAGTCATGCAGCAGCTGAGATCGATGTGCTACTTCACACATTTGATTATTGGCA
CTGGATTTACTGTCGTGCCTAAATCGCAGACCTAGTATTGGACGTCTTGTACTCCCTTTC
TAAATGTAAGACTCTTCGATTTCAATATGGACTACGTAAAGTTGTATATAGATATCTTTT
ATTTTAGATTATAAATTTATCTATTTTATTTCGTATGCAGTCTATATTAGAATTTTTAAA
AAAGACTTATATTTAGGAATTGAGGAAGTAAGTAGTAGCAAGAGAATCCCACCCAACATA
TACTCGTGTAACCCCCTTGCATCGCCACCCTAGGGCACTAGCCCCTCCTCCCCGGCAGAT
TCCTGTTGTTGCCGTTGACATGGGCTCCAGTGACGGCCACGCCTAGCGCCAAAGGTGCTA
GGGCGGGTGGGTTGCGGCGGCTCCCCCATGAGGTGGCTGGGGCTGCTCGTATGGGGTGGC
CTTGAGCGGTGGTCAAGGCGAAGGTCTTAGCTGTGTGGCGGTAACTAGCTACCTCATGGC
CCGCGGGGTTATTTGATGGGCTACCCTGTTGTATGATTGTCGGCAGCCAGGTGCGGCGGC
CATGGATCTGACGTCCTGGTCAGATCCTATCGTAGCATGAAATTAAACTTCCAACAGTAT
TATGAGACCGGTGTTGGGCGGCTGGAGGCTTCCTACCGGCATTCTGGCGGCGGCGTACGT
CTACATAGCAAGGTTGCACGTAGATCCAGTCAACAATAAGATTGGAGTGATGCGACTTTG
ATGAAAACTGTGCCGACTTCGATCATGACGGACGATGACGGCGTCTCCCAAATCGTTTCC
TTATTGAGGCACGTCGTTGCAGGTTGTGTCACCACTCAGGATGTTCTGGGCCAACCCTAG
ATCTGATCTCTCGCATCACACAAGGGCGGCAAGTGTTGACTGGAGGGGATAAGAGGTGGA
ACGGTGTTGCATCTTCACCATTCACATCGGCGTATTAGGGTCTCGGTATTGGACATGTGT
TGATAGATGCGCGTAGGAGGATGGTGTTGTGCGTCGTCGATGTGGTGTTAACGATAGATA
GGTCTGACAAGGTCAATGCATTGATCACTTTTAAAGATGGAACGATGAAAAATGATGACG
GTGGAGTATAGAGCGTGCACATGCGGTTAATTTACTAGACCGTTGATGCTCCTGACCAGC
CGGCTAGTGGCTTTGTAAGGCCATCGAATTATTTGATGTGTGTTGGCGTGAGGTTAAGGT
GCACCATCAAGCTTGTAGGAATGGCGACAGTGTTCGGCGGCGCCGGGGCGGGGGAGAGTA
ATAGTTTCGCATTTGATATGTTGTGCTGATTCTGCAGTTCTCTTACTACCTAACCAGGTC
GACACTTCATGTGGTTACGGTTCACTTGGTCCTGTAGCTTTCAGTTGCGGATCGTACGCC
CATGTGTCATAGCAGACACTAGCTAAAGCTTGCTCCTAGTGCTCTTGACCACGCGAACGA
ATTGCCAGAAAAATTAAGAAAAAATCTGGACGAGCAACTCCAACGTGCCGATTCAAACGG
ATAGTGGTTTTGTTTGTTTTTTGCCTATTTGAACTGACCGTCCGTTCCGCGTCTATCTGC
TTTTCTTTTTGGGTCAGCCACGCGTCCAACAATGACGATCCATTTTATGTCCGTACAGTT
AGATTAAACAGGCCAGCATGCCAACGTCCAAGAGTTCATGTCGGTATCATGTCAGCAGCC
GACATACATTGTCAGCCTACATTAATACCATCACGCAGTTCATGCTGGCACACTTGCCAG
CGGCCGGCACACATGCCAGCACGCCAAAAGGGGCGGGAATTCAACCACGTCATGTCCGCC
CGTGGTCATGTCAGCACACTTGCCGACATACAAAAAAGGGACTGTGATCTCCATCGCAGA
TCACAGCTGGTCGAACTTGAGCATTTCGGCCTGCATCTTCTCGAACCATAGCCTCTTCCT
CGGCGACATGGTGTTCAGATCAACCTTCATGATCTTCGCGCTCGCGTTCACGCTTGCGAG
AGCCACTTCTTTCGCCTTGTTCCTCGCATTGATGGCCTCGATCTCCAGCATATTGGCTTG
CTTTCCTCCTCCAACTAAAGCATCTTGGCTTGCCTCTCCGCATTCATCTCGAGCCTCATC
CTTTGGATTTCCATGAAGGCGTGCATTTGCTCTTCCTTTTCTTGCCGGCGCTTCTCCTCC
TTCATGTCCTTCTTGCTTATCATGGCCTTCACCTTTTCAACCAAGGAGATCGACGCCGCG
TCCCGCCTATCCTCCTTCTTCGAGTTGGTCTTCCCCCACATCCGGGCCTTCTCACCACCA
TGGTCCCGCGGCGGCCTTGCGGGGGGCCGGGCCTTGCCTGTGGCTTCGGCGGCGGCGATG
AACGAGGCCATGAAGTTGATGGCGGCGGCGGCCTCGAGGTCGTCGTCCATGGCGGTAGGA
GCAAGCACGGGAGCGAGCGGGAGGTTTTGGGGAAAATGGAGGGAAAAAGTGGTTGCTTTG
TCGCTGACTTGCGGGTCAGGGAGGGAAGTAGGCGCGGCTGCTTCGTGTCCTCGCCGACGC
AAATCAAGCTCAAAATTGGGTCGGAAATGGGACGACAGGCGGATAAACAGCGGACGCGCG
TCCGTTTGGATCGACGCGTTGGGCCAACTATTTGTTCACGCATACTCAAACGGACGACGA
CGGACCAAATGGGTCGTTCCTTAGAGTTGCTCTTAGTACTTTTTTTATCGAAGGGGAGGG
GAAAGCTCCTCCACCACCTAAATATATTCAATCCAACTTTCTTAGAAGCTTCGTGGAAGT
AAACCAGAATCCACACGGGTAAACAAGAGAAGAGACACAACCAAAAACACACGCACACAC
ACACACACATCCAGCGGAACCACCAAAAGACCCCGCTGAGGAAAGGGCACACATGGAGAA
GAACGCCATTTGAGGATCCAAAGCTGGATGCATCATCACCACTTACCGTCATCACAAATC
TCATGAGCACAACCTAAAAGGAGAAGGGCCAGAACTCACATCTTCATATGACCAAGCAAG
AAGAAAAGGCTTAAACGTTGGTTGTTTGGTCGCCACCAAACAATACCCTGCGGAGTAGAA
ACAACGTGATCCATTGAGTAGGATAAGAACCCGCTAACCCGGTTTCGGATGAAAAAAAAA
TACTAATCACCATCCAATAGAATTTACTATTGGTATCTGCCTTTCTCTTTGTATGATACT
TTTTGTGCTAATCACGCTACATGAAAGCCAAGCTTGCAATCGATGGATCCAATGGTCTGG
AGAAGCTAACACCACCTTTCCTGTTTGTATGTACATAAAAAAACAATATTCATCCAAAGA
GAATGCCGGAGCCTATTTCTTATATAGTGCTCCTTTCAAAGCAAACCACTGTTCCCTCTC
TGATCTTGTGGATGGTTGAAACAATCATGTATCCTACGGCCAACAAAACACAGTGGAATT
AAGGGAAATGCATCCTGAATCAACCATTTTGGACAAACGATGTCGATTAGGAGCTCGACC
CTACTCGGTCAATGAGGAGATAACCGTTCTGCTCGCTCGCGCTCCAATGTTGCAGAGGAG
GACGGTTACCTCTAAGTCAACCTATGGCATGCTCTGGCACGCAAGCATAAGTTTTTCCCC
AGCAATCTCGATCTGGAAATGTTGGGCGCCACTTTCGTGCAAAATATTCATGTGGTTTGC
TACGCAGTACCGGCTCTGAACATCGGATCGAAGATTACGACATGGCCTGCAAGATCAAAT
CTCTGTTTGCTACATTTGCGCACACGAGGAGGACACGGTTGACCACATCTTGATCCATTA
TGTCTTCGCTCGACAAGTTTGGCATGACTGTTTCTTCACGGTCAGAGTTAGTGCCGCTTT
GACTCCTTCGATCGAGAATAACCTTGTAGCTCGTGGATGGAAACTCGTAAACAGATAACG
AAGAAAAACAGGAAGGGATTCGACTCCATTTTTTTTTTAGAAAAAGGAGGATGACCCCCG
GCCTCTGCATCTGGGAGATTTTATTGATGCGGCTATTTTATTGATTATTCTCGAGGACCT
TACAAAGTATTACAACAATATGTGTGAATCCGCCAACTTCGCAACATATGTCCCTACTCC
TATCCATATGATGAAGGGGTGCTAGCTGGGCCACATNNNNNNACCAGTTACCTAATCCTA
ACATCAAAAACCGGGAGCCCCAGCAGAGCCGGTCGAGCCA