Map Locations of contig_44935 (5753 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_44935

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60953 2 2495 bp MLOC_60953.1 Available Available LOC_Os03g57790.2, FRAME:-1, EVALUE:3e-27, 13103.m06340 protein ubiquitin-conjugating enzyme, putative, expressed
MLOC_60952 1 1216 bp MLOC_60952.1 Available Available None





CDS Structure of MLOC_60953






CDS Structure of MLOC_60952






Contig Sequence (5753 bp)

>contig_44935 5753 assembly3_WGSMorex_rbca.fasta
TGGGACGGAGGGAGTAGTTTTTAGCTGCCAATTGAATCAACATTTTCTTAAAAAACATGA
CTCCCTCTGATTCATATTAATTGTCGCTGCTTTAGCACAACTTCGGGTCGCAGGGAGTAC
TTTCTTTAAAGAAAAGAACACTTATTGACTTACCTAAGAAAACATGATTTCATTCGGTAA
ACTAGAAGACGTGTGTGGTTTTCAACAAAGACCAGTCGAAAAAAACAGAGGTGGGAGGAA
AACAATTAAGACAGAGAGGGAGGAGAGGACGGAGTAGAGTTGGATGAAGGTGGGAACGAA
ACGCTGATGGGTGAAATACGAGACCTGACGTCTATATTAATATATAATAGTAGAGATAGA
GATACAAACCGTACAATACCAAACTTTTTTGTTTAGTCATACACCACACTATTTTTTTTG
TCGATTCTGTTTAAATAAGTTGATGCTAACTAGGATTAAAACGATGACATTTCTTCATAT
GGTTATGTTCGTTGCACGTGCACGCCTGGTCAGTTGGCTTGCCAATGGGGCTGTGAACCA
AACATGCCTGAAGAGGCTGGAGCAAGATGAGATGTTTCATTTCCACCATTCCTTACAAAG
AATATAACTTCAATACCACTAGACTAAGCTTAAATTAGATATTTGCATAAATATGTCATA
ATGAGACAGCTTCTCCAAATTCATGCATATTGCCATACTAGGATGCTACATGCTAAAACA
TATGCACAATAAGCATGCATCATGCACCAACATGGTTGACCCCCTACATGGTTATTTTTG
GGCCATGTGCCAACGTGTAGGGGGATGGAACGATTTATATTACATTTCTTATCTGGCCAC
TCTGAACTTATGGAGTGGAACAGTATCCAGCTTGGGAGGGATTTTGGTGGTGGTGACAGG
GAGGGCCTAAAGTGGTCGGACCCTTCCCCAGACCCTGCGCAAGCGATAGCTACGTGCACC
AGGCTGTCCTTTTTTTATGGGGAGAGCCTATCTAAGATGTTTTACCAAAAAAAATACTAC
CCTGTTTGGATGCTCGGTACAATACACATATCAATAGGTCTGAGCCGTGGGCATGCAAAT
ATCACTACCTGCTACTATGCATCTGCCGTGCATTTCCCTACAGTACAAATATGAAGATTG
AATAATGCTCTCAAAAACAGGTGATGTTCCTGGAACTGTCACACAAGCAATATTACTGAT
TTAGTCTTTTACACACAAAAATAGCAATTTGCTAATGTTCCGAACTGAACAGACAAAGCA
ATGTCAATAAATTAGTTCATCATGTATTGCTGTCACACCAGCAATATTATTGATTTAATT
TACACACAAAAAAGCAGTTTGCTAATATCTCAAACTATAAACTGAGAAGCAAAGTGGATA
ACTAGCATTAAGACGATACATAACAGATATACACTTTTTCTTTATATAGTCCTCAGATAG
AATACTCAACCTTATGGAGTAGTAATAATATTTAAAAGAGACAAAAGCATCGCGGCATTC
ATGTTGCACCGGAACTCCTTTCCTAAGTTAAATGGGGAACCAATTTTCAAATGCAAGTCC
AAAGCTTGCTGCCAGAGGAATTTCCAAAGCTAAAAAAATTCTATACCAAAAGAACATTGT
GCAACTCCAAATCAGCTTGGCTTTCCAGCCCATAACTCACTAAAAATTATTTACTGCAGA
ATTCATACGAATACCCTAACTTCCACACGACAATTTTGGTGCACCTTCAGTGGAGTCTGC
CGTCATAATAGGTTCGACCATGCAGATTTTGTCTTTCGATTTAAGGAAACCCAAAACCAG
TAGCGATTTCATAGCTTTAGGCTAAAATAAACACTTCCAACAGACCTTCTACTGCTGTAA
ACGGCGACAGAAAAGCCCAACGAACTGTACGGCCCAAATCATGCAACGGAATTTACCACG
CAAAGCTTATAACAATCTAATGGATGCGCAAAAAGGCTACAACTGAGCATCACTCCCAAG
ACAAATAAAAACCATCAGCAACATATCAGATAGCTGCAGTTCCGCCTTACGATTCACAAT
AAAATTACACCCAAGTAACTAGCAACCACACGTATAAAACAATAAATCAGCTAGAGGTCA
GAGGAGATCAAACCGACGAGCCTCACCTCCGTCCCATGGCGTATCATCCGGGCTGCAAAA
ACCACACCACAGAAAAAGAATCCCTCGTCAGCACCACAAACCCTAACATGGAAAGAGCTG
AAACTGGGAGCCTCGGCACGATCTATAGGTCCCCAGACCAAACCCTGGAACAGCGGCGGC
GGCGGCGGAATGACCGTCCACCAAGCTGGGGGGGACCGGAATTCCCAGACAGGGCGGGAT
CACGCACCCGAAGATGACGGCGTTCCAGAGCATGATGTTGTTGTCGTGCGGCGCGCCGCT
GATCCCGGCGGGTGGGTCATGCTGCAGCCGCTTGAAATCCCGCATCAGGCGCTTTCTCGA
CGGCGTCGACATCTCCGCCGCCGGCGCTGCCTCCTCGAACCCGCTAGGGCTCACGTACGC
ACTCACTCTCGCCGCAACTCGCTAGGGCTAGTTGCGTCCAGAGAGAGAATGTGCGGGCAT
CTGCAATCTACAACAGGTAGGGGTGGAAAGTGGCGGTGGATAATTCCAAATATCCGATGT
TCGTTTCGAAGAAAATGTCCGAAACATCCGCATTCAAACCAAAATGAAAAAGAAAATTAT
CGTATCCGAATTTATTTAAAAAATAAGGAAATAAATATGATATGAGATTTTGACACAAAT
ATGGATATGAAAGTGGATATATTCGTATCCGAATAAAGATTATTGGAGGTAATTTTGAAT
GCTAGCCTACAAATTCCAATTATCCAATATAAAAGCCAAATAAGTTACTCTTTGTATGAT
TAAACTTAAAAATTATTATGCATACAATAGTATTTATTCATTCCTATTTATCGTTGATTT
ATTGTATGTCACAAGTCAATTGTTTCATGTCACATAACTATTGACTGATTTACTTAAAAA
ATATGTCACTATTATTCGTATACGTTCTGAATCGAGCAAACATCCTATACGTATTTGTCT
TCTAATAATATCCGAGCACGATAACATTCGATTCGCATCCGATCCGCTTTCATCCTAACA
ACATAGGCGTACCGACACATCCCATCAATCATTTTTACGAGAAAATTACACTTTCCGTCC
TTCAGTATTTACGAAAAACACTTTCAGTCCTTCAAAACTATGACGCGCAACACTTTAGTA
CCGTAACTCTAGAAACACTAAATACATAACAACTATTGTTCTATTTATAGTCCTCTCGAT
AGTTGGTTGCTCGGATGCCACCACGTGGCGCCGCGCTTTTGCGGAAAAGCCTAGCTTTTG
TGAAAAATTCACAGTCCACCATGTCCACGTGCCATGTGTCGTTGCTTTCAGGCCCACTTG
TCGACCTCCCGCGTCGAGTAGTCAAATTCTCGCGGCATTATTCAACAAAGCAGTCGCCTT
GACTCCATCACTCCAAGTGAGCCGACTCCACTCCATCACCCATCTCGCTCCGTCTCTTCT
CATCTCACCCAAATATGTCATCCGAGATTGCCCAAATCTCTAACCCTCGTAGTCAATCTC
CCGATGGTCGCCATCCAATCATTAAGCCACAATGGAGATCACTCCTTCGCAGGTGCAAAT
CCTCATTCAAGTGGCCACCGGCGATGCGAACAAGCTCGCCCGACTATGCAAGATATGATC
GTGGTTCCCTAATCTAGTGATGCTCTACGAGGAGTTGGTTGTCTCATGGACGAGAAGAAG
GCTAGCATGCGCCCACCATGCTCTTACGGTGGAGTACTTCTACCGGGCGATGATGGAACT
AGAGAGCGACGATCTGATGCAGAGGAAACGCTCGAGGGCTACAAGTCTAGCATGTATGGC
GCTGGTGAGGGCGCGGGTCCTATCGTTGGCCATGGTGCGCTCTAGAAGCGATTGGTCATG
GCGATGTGTCGTGCATCGTTGCTCTCCTCGTTGTCTCATCAGCCAATTTGAGTATGAGGA
GGCTCCATGCAAAGGCAAAGGAGGTGGCCTCGCTCGTCGCTCTCTCCGCTTCCCCCGCCA
CTCTCCAAGCATTGCATGCTCCGCTGATGCGTCCTAAAGGTATATCCAGTCTCCAAACCT
CAATGTTAATGTAGTTTAGCTAGTCTTTCATAGATATCTTATGTAGAAAATTTGCATGAA
GGGTTTAGTGGCCCCCAACGTTAATGTGCTTATGAAAAAAATCATTGTATTTATGTCATT
TTATATTATTAGCATTGTTTTTTGTCATTTTTACATTATTAGTGTTGATAATATAATTGT
TAATGTATTGATTTTTTTCACGTGGCCTGACAAACACATAGCAAGCATGCATAATTACAT
GTCAAATAACTAATTTTGCCATCTTTTTTCAAGGAACAAAATCTCCTACATTTGCCATGT
CTCTCTGGCAAGTTACTAATTTTCCAACTGTCAATTTACGGATTTCATGTTTCTTATTGA
CAACAAATCCTAAATTTTGCATGTGTTGTATTATTTATATTTTATCACATGCTGTCAGGA
TTAAATTTGGTGGATCTCGGGTAGGGGTCTCGAGTTATGGATCTTGGCTAAACGATAATA
GAACAGAGAGGGACACAATGTTTTACTCACGTTAAGGCCCTCTCGAAGAGGCAAAACCCT
ACGTCGTGCTTTCTCATGCATTGATTAATATGAGGTATAGAGTACATGATGATCTACCTC
AAAATCATATATGAATGAATCTAACTTAACCCTATGGAATAAACACGTCGACTTATATAG
GCACCATGGGTACCTAGGGTTACGAGTAGGTCGGTTACATCTAGGGACAAACATGCCAAT
GATTCAACCGTCCCTTTGAGTATGCGCCAAGTCTTCGAAGGATTCCATCTTGAGTGCACC
GAGGGTCATGGTAAACATTGCTCATTCTTTGGTTGTATGGGTGTCCTCTTCCCGGCTCAT
GACTAGGAGGCCGACATGGTCAGTATCCCCTAGTCCAGGGCACCATCAGTAGCCCCTGAA
CTGGTCTTTAAGCCGAATACATCGATCAACTCCTTAGACCATCTTTGATCTTCGGTTTCG
CATGTGAGTTCCATATGCCTCTTTACATTTTCCTCTATTGTAACCAAGTTTCGGCCCGAG
AAGGGATATACCTAGGCTATACAAGGAAGTCCAAGTAGTCTCTTTATAAAGTGTTTTTAC
ATTCATTGGATCCAAAGACCCTATCCACGACTAGGCGGCTTAATGGCGAAGTCTCTCAAT
ACTACCATGGGTGACTCGACTAGGTCGAGTTTTGACAATTTTGACCAAAAGCTGAACCGC
AACCATGTACTTTTGGAACCAAAAAGTCCCATCATTGGTCACTACACTTAGTTTTAATGT
TGCCCAAGGACGTTGTCATTGGCACGTCCAATCAATACAGGGGCGTTGCTAGTAGAAAAA
TCACGCACGCGTATAATGCACGTTATGTTGGGACCCGACAAAATTACCGTGCGACATGTT
TTACTAGCTTATAAAAGGGTGAGGGTCAATCCAACCCATTCCCAGCCTTCCCCATTGTTC
CATGCGCCCGAATCTCACAAGCTCCAATACTGAGAGAACATAGTTCAATCCATCTTAAAG
GACGTGGATGTCGCCTAGAGGGGTGTGAATAGGTGTTTTAAAATAATTACGGTTTAGGCT
TGAACAAATGTGGAATAAAAATAATGTTTAATTAATCAAGCACAAAACCTAAA