morexGenes - Barley RNA-seq Database

Contig contig_44897
Source Contig contig_44897
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44897 (8060 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_44897

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60915	1	918 bp	None	Available	Available	LOC_Os08g28240.1, FRAME:-3, EVALUE:3e-38, 13108.m02917 protein carotenoid cleavage dioxygenase, putative
MLOC_60916	1	744 bp	MLOC_60916.1	Available	Available	None
CDS Structure of MLOC_60915

CDS Structure of MLOC_60916

Contig Sequence (8060 bp)

>contig_44897 8060 assembly3_WGSMorex_rbca.fasta
CACTAGCACCTTTAGTCCCGGTTCGTGGCACGAACCGGTACTAGAGGTTCAACATGAACT
GGGACTAATGATGCCCGCCCCCTAGCCGTTGGAACCGGCACTAATGGTCACATCAGTGCC
GGTCCGTTTACAAACCGGGACTAATATATCTTACGTAAAGTAGTTTTTCTATTACTGATC
TCTCCTGCCCCACAAGGGCAGGCGTCCACTGCACTAATGACGAATCCATTCGTCCCACAT
TGGAGGCTGCCATGGAGAGATGCATTAACGACCGTCCCGCATTGATTTGGATAAATGAAT
ATTTGTATAAGGCACTGATTCTTCCTTCTCAAAGATTTGCCACTTAAAAGTGTGTATTTT
TTCTTGTTCTTTCTATCCTCTCACAATATCTCTTTCCAAATGTTAGTTTTCTATCTCTTT
CAGAGCAATTTTTGTATTTTTGAAGGAAACCGGGAGGGCAGACCCCCTACCTACAGATTT
ATATATAAAAAAACCCATAAGCGGAATGCTTACTGGGGTAATAGTTTTATACAAACCAAA
GTACATATCCGGAGAGAAGAGGAGGAAAAAATTCAAGTCTTTTGTTTCTCTGTTTGTTCG
AATGGATGGATCAGGTTTTATTTTTTTGTCTGCAACTGTATCCATTATTACCTCTGTTTG
TTAGGCGTGGGCTGCAATGCAATATGCACCATTACAGTTGCTACTTTTCATCGATAAAAA
CCTGTAAAAATGTGGTAAACTAAATAAAGTACTACTCCCTCTTTAGTAACTAATATAAGA
TCGTTTAAATCTCTGAAGTCATATCTTTGGTCCAGCATGTAGCCTGCTGCTCATATTTTG
ATTGTATTAACATGTCCTGCCTTCAGATTCGATGCAAGATCACAGTATAGGCATCATGAG
CAACAAGAATCGATGGGTGAACATGGTTTTAGGGTGACACTGAAAAGACAAGAGCAGAGC
AATGACCAGACTCAAGTTTTATTAGATTTAGTTAGTGGAGTGTATTCTATTCTATCTATC
CAAAAGTTATATGAAAGGCCGTATTTCTGTTTTCTTCAAATGTGAGCACTCCACCATCGC
AGGCTTGCAGCACTGTGTCCATATATGAATCGAGTTAGCTCTCCAGATTATCATGACACA
GTGAGTAATTTATCATGCCGTACCATTCCATAATGAATTTCATTGAGCTGTAACAACAAG
AAATAAGAGTAGCAACTAAGCAATTGAGAATACTCCAAGCTTAATTTACCATATTTGTAT
CTGGTGCTATGTACTAGCACTCATGTACATATTTTATTTCTTAAAGTGTTACTCTAGAGT
TGTTAGAATCTGTTTTGTTGCATCTTTACGGAGAAAAACATGCTCACAAATGTTAACAAC
AAATGAGAGGTAAAGCATATGACAAACGTATCAACACTCCTATAAAAATATACTACTGTA
AGATCAGTGCTATCAGGAATGGCTTAATAATTTATTGACATTGCTGCACTTCTGTTAATC
AAGCAAGGCACATGGCCAGTCACCGGTTAATATGAACTACAGGTAATTTACACTTATTAT
AGAGCTATGTTTGCTTTCATTAAGTTTTTGAGACAAATGCTCCATGAAAGCCATAGGGTA
CTCTTTGTGGCAATGTTATTTTAGCAACTGGCCCACTCTCAAATCTTCGTGCGTCGATAA
TATGTGCCTGTTAAATAAATATATAAGGTTGAAGTTTGTTTAGTTCATGGATAATGCATA
TCGTAGTTGTGATAGTACTAACAACCAAAGTCCTTTCTTCCCAGCCTAAGTTTAATACTT
GCCTGTGATATATTTGTGCCCTCATCGTGCACAAAAGAGATTATCCATCCATCATCCTCA
TGTAGCGCATCCTCTTTCGCCACAAAAATTGCTCCTGAGCAGAATTGATTTGTTTCAAGG
TGGTGGTACTCCACATGGATTGAATCTCCACAAGACTCCTAAAAGCATTGCAAATTATGA
AGTCAGTAATCTTACGAGCAAGTAGCAGTACATGAATGGATTTTACAGATGATAGGCATG
CCATGTGTTACCTTGATTTCTTGGTCAAGATATAGTTTTGCAAAACCTCCAAACTTTGGT
CTCACTACAAGATCGAGAAATATATTAAAATTTAGCATTGGACTCACACCACATAGTTGA
TGGGATTTTCTATTATCTAACCCTACATTTCCAAGGTTTATGATTATGTTGCATCTACTA
ATATATACAGTAGAAATCTTTGATTCAGGTAACCCAACTTGTTGCTGCATATATAGAAGA
GAATTGCAACGTTTGCTGGAGGAGAAAGGTGTGATAGCTCCCGGGTGCCTAGGCACCCTC
TATGAACAGTAAAATTCAAAAAAAAATTCAAAAAAATCTGAAACTTCGCAGCATCAAAGA
TGATCAAACTTTGTAGGTTCCTACAAGTTTTCATGTTAAAATATCATGTAGAGAAAGATG
TACAAACAAGTTTCAGATTACAGCGCTAAAAGTGCTCAAAACTTCAAGCATTGAAATATT
TTCCGTGTGTAGAGCTCCTCGAATAGTTTTTTGGCATGAAAACTTGCAAACACCTATAAA
ATTTCATCATCTTTAATGCTGCAAAGTTTCAGAATTTTTTTTATTTTGTTTTCTATTCTT
TTGATTTTACTGTTCATAGAGAGTGACTAGGCACCCGGGAGCTAAAAATTCACTCTCTTT
GTTTTTAGCCGACCCACTTTGACCTATCAGCTAGTTCAGCTAGTTTATAGAGGGTGCCTA
GGCATCCGGGAGCTAAAAATCCACTCTCTTTGTTTTTAGCCGACCCACTTTGGCCTATCA
GCTAGTTCAGCCGAGCGTGTCGAGTCTCCCGGACCGACAGCGTATCGGCGGTGGCCCGAG
GCTGCATCTTCCCTGCTTTGCCCTCCTAGGCAATATTCTTGTCCAAGTCGCTGAAGAGAT
GAAATCAGAAACCTTTAATGGTTCCATAGACACCTTGGGCATGGGACCTTTCAAAGGTTT
AATCTTCACGGAATTGCTCTTTCGAACGGTACCCGATGTCTTCCGAGCAGATTTCACGCT
CAGCCTTATTACCTCCTCTGGCGACCGTCGTTTTTCCATGTCTGGTGAAGATAGTTCTTC
CGCATGAAGTGAAGGCTGCTCATCCATTTCCTCGTCGTCCTCTTCAGCAAGCACCCAAAA
TCGCCCCCCAACCCGAGGTAGGCCTAGTTTCGGTTTGGTCTTCACCTCCTCATCCGAAGA
CAGATCAATTGTCTCGAGATGTTCTTGGAGTATTGCTTGGACCTGCAAGATCTCAGAAAT
GATAGTAACATTATAAATATCAATTGAAATGCGCACACCTTCGCTGAATAGACCCCCCTC
TTGGAGATGGCGGCCGACGAGGATGTCGTCCTCCTTGTCCCTGATTGTCATCCATCTTGA
CACCAGATGCAGGAGTAAGGTGCCTCCATTAAGATATGTCCTATCAATCTCAGAGTATGA
AATTTTCCATCTTCTACGTAAGTTGATATCCGACGCCGACGAGATCTGAGATGGCTGCTC
GTTCTCCGCCGGGGTTAATGCGTGTGTGTCACTCTCGGAGGCCTCTGGAGCAGACGGCAA
TCTATTTCGCCGCTCTTCCCCATCGCCGTCCATGGCGCCGGCGTCGCCAGCGTCCCCCGC
GTCACCTGAGTCGCCTAAGTCGCACATGGGCTAGATATCGTCCCCCCCAAGACTGATTGT
CTGGCAGTCTGGTAAAGAAAGATCAGTCTGGAGAAGACGTCCGCACCTACTCATCCGGCC
ACCGCATCGTCATCTCCTATCCCATCCGCAAGGCAAGGCCTCTCCTCCCTCCCGCCTCCT
CAAGCTGCCTCTCACCTTCGTATATGGACCGTGGTTCATACAATGGTGGGAGATGATGTT
GTTGGTTGTCAAGAAAGTACAGGGGGCTGCAGAGGCCGGGGCCTGATCCTCCTTTTCAAT
TTTTTTTACAGGGGGTGGTTGGCTCTGATTGAACATAAAACTTAATTAGATATATCCATT
ACATTTAGTTGAATGCTATACACTCACTCCTTAGAACAGTTTTTCCATGGCCACGTGAAC
ACATCCATTTGACATCTACCAAAAAATAATAGAACACGAGTAACATTATAAGAGTTGTGA
AACAAAATTAGATTGGCACTCGTCTTCGCTTCCTCCCTCGGAAGGCACTAACGTCATGTG
TACCCTGAGCATGACTTGTAACAAAATGAGGAAATGATTTATGAGGAAGTATCCTTGATT
CCCATGCAATTAGAATGAAGTCTTGTTTTTCTCTAAAAAAGAATGAAGTCTTATTTTGGC
GTAACACTAATGAATGTTCATCTTCATTTGATTGTGTGGTTTATTCTGTGAGGTTTTGAT
TATTTTTTTGTAGGTTTTGTGATTGCCATCAAGAGGGAGTTTGAGTTCGGTCTTTCTTTG
CAGAGCTGGTAGAGAGTTGTTCCTAGTTTGATTATGTCGATTGGTTTGCTTATTAATTCT
TAGTTAGGTCATTGGCGATGTTCTAAACCTGTGATCCATGTAGGCATCAGAGAAAGCAAG
AACTAGATCACCAATGGTCTATAGTCATTGGCCATGAATGCATGATTTTTTCTTGCCATG
GTACCAAATTTTGGCAGGCATCTAATGTACTCGTAGTGGTAAGTTATATCAACTAGATGG
ATTACATCAATCCATGGCGTTCCCTTCATTGCAACTCATTTGGAAGCAACGTGTTTGATT
CTCTTTATAAACTACTTTCTCCGTCTCATAATATAAGAGCGTTTTTGACATTCCGTCCCA
TAATATAAAAGCATTTTTTACGCTTGACACTAGCTTAAAAAATGCTCTTATATCAGGGAC
TAGATGGATTGATCTTTGATGGGTGCCATTGCTGGAGTGATACAACCTTATCCTTCATAG
TGCTAGTAGCTAGCTGCTTGGAGAAGCGAGTGTTTTGCTGTTGGTAGTCTGATCCAATCA
GGAAAACCTTATAACCTTATAGATGGATACTTAACAGTAGCGTGTGTCAGGGGTATGTGC
TACTTCTACTTAGCGGTAGCGTGTGTAGTAGCGTATAGTAGCTACTAGCATTAGCAGTAC
CGCGTGTAGTAGCGTATAGTAGCTACTAGCAGTAATGTGTCACACCTGGCCACACCTGGC
AGGTGTGACCTGGCATGCCAGCATGCAACCAAGGAGAAAACGTGTGCGTGGGTGTGGGGT
TATAAAACAGCCGCCTGCGAGAGGGGTGTGTTGTATGTGAACTTTCCGGTACCTACCTAA
GATTCCTCTGCAATCCCATCCCTTGTCCTCCAAGGATCGTCCCTCTCCTCTCTACCTCTC
ACCTCCTGATCTGACCCCCTTTCCCTTCCTTTGGTATGTTACAGTTGGTATTCAGAGCCA
AAAATCTCGCCTCTGCAATCCCACCCCTTCTCCTCAAAGCTTGTCCCTTTTCTCTCAGCC
TCTCACCTCCCAATCTAATCCCTATCCCTTCCTTTGGTACATTACATTTGGTATTAGATC
CAAAAATCTCGCTTTTTTCCTGTTCTAGTGAGCAGATCGGCACCATCCATTGCGCCGATG
CGAGCCACTCCGGCTGGCTCTCTCGAAATCAGTCGCGGGGTTCGATCTTTCCCAGTCAAC
GACAACGGCGCCCCAGAAACCTTCGGCGGCGACGCGACAAATCCTGGCGGCCATGGATGA
GGGCAACAACAACATCACCAAGATGCTCGAGTCGCTAATAACCAAGATCGACGAGCAGAA
AGTGCTCCATGACAAGAAGATCAAGATCCAAGCCGCCTTCAACACGTATTTCTCCCAAGA
GCTATGCGGCCTCGCCAAGCAGATCGATCTGGTGCACGCGGAGGTTGATGTGACACGCAA
GATGGTGGAGCGATCCTCGTCCACCGTCGGATCGGTCACCACCCTCGTCCACCAAGCCCT
AGAGCCACAACCACCACCACCACCACCATCACCGCCCCTGTCCCTGCGCAACCCTCTGAA
TCTGGCTCGTCCGACAGGACCGCATGTTCATTTGGGGGACAACCCTCCGCCCCTGATTCA
GATCCCGCCCGCGGTCGTTGCGCCGCTGATGGGTTCGGCCTCTTCCCCGATCGCGTTCTA
CACCAATGGTGAGGACCACAAGCCGCCCAAGCATGATTTTCCAAGGTTCGAGGGCATCAC
CCCGTACTTGTGGATCAATCGTTGTCTGGCCTATTTCGTGCTCTAGAGGGTGGCACCACA
CAACTGGGTGGCCATCGCGGCTCTATACATCGATGACCAGGCCGCACACTCGCTACATGC
ATTTCGTCAAACACATCATGACATTACTTGGGAGGCGATCACAGCCTCCTTGCTGGAAGA
ATTCGGGGCCAACGAGTACGAGCTCGTTATGCACAAGATATTGTAGCTTCGCCAATCCGG
CACCATCTCTGGCTACCACGTTGCGTTCGACGAGCAGATGTACCATCTTCTCGCCCTCGA
CACCACGATCAACACCAAGTTCTTCGTCACGTAGTTTCTCTTGGGGCTCAAGGATGAACT
CCGCACCGCGGTGCGTCTCCAAGCACCAGCCAACATCACGCGCGCCTCCGTGCTGGCCCG
CATCCAGGAGGAGGAGCTGGGCACGACGCGGGCGAAACCCCGCATGCCCCCACTAGGACA
ACCTCCAACGACGGACCCAGCACAACTTCCATGAGTCGTCGCGCCTATCCGCACACAAGG
GGACTAGTACACGCAAGAGCGGCAACTACGCGACTTCACACGCGCCAAGAACTTGTGCTT
CAAGTGCGATGATCGCTACTCACGGGAACACAAGTGTGCCCAACCCACCCAGTTGCCCAC
CATCCGCGTGGGCGATCATGGTGAGTTCCTCTCCAACGACGCCATACATGCAATGGAGCT
GCTAGATGATCCAGGCCTGGGCGCTCGTTCACCGGCACCTCTAGCAGATGCACGAGAGTG
CTGTCTCCTCCCCTCACAGGCGCTGGAGGCACCGACTCAGCCACCACCTCCTCCTTCGTG
CACTGGTGGGAAATCAGGTGATGCTGCTCCTGCTTGACTCCAACATCACTCATGGCTTCG
TAAAAAAAAATCCTTCGTCTAGCGGATCAACTCTAAGACCAAGGACATCGCACCGGTGGA
TGTGTGGGTGGCGAATGGAGATCGGCTCACTTACAATCGCATCGTGCCCGAGCTCAAATG
GTGGATGCATGGGCACACCTTCTCCACACCGATGCATGAGCTGGAGATATGCGCGTACGA
CGGCATCCTGGGATGGACTGGCTAGCCCAGCATAGCCCCATGACTTGCCACAAGCAAGAC
AAATGGGTCAAGTTCCAACACACCGATGAGGCGGTCACCCTCTACGGCGTGCAAATGACA
GCAACCCCGACGCTCAAGCCCATGACATCGGAGGAGCTCCACAAGATGATCGCGGGAAAC
GACGTCTAGGCCATGGCCATAGTGGACACGGGGGGCCGCCACCACCCACATGTAAGGGCG
TCAGCAATACTCCACTCACAGAATTGCTCGTCGAATTTGCAGACATCTTCATGACGCCGT
GCGGCCTCCCTCCCCATCACCAGTATGACCACGCGGTCACTCTGGTGGAGGGAATGGTTC
GAGCCAATACACGACTGTATCGCTACTCGCCCCTCCAGAAGGACGAGATCGGCCGCCAGG
TCAAGGAGATGCTTGATGCCGGGGTGATCACACACAGTGTGAGCCCTTACTCAGTGCCGG
TGCTGCTCATGAAGAAGAACGACGAGACGTGGCACTTCTGCGTCGACTACCGCCGCCTCA
ACAATGCCGCCATCAAGAACAAATTTCCCTTGCCCACTATCGACGAACTTCTGGACGAAG
TGGCTGGCGCAACGGTGTTCTCTAAATTGGACCTTGATGTTTACGCACGCTTCTATTCTT
GTAGACCGTGTTGGGCCTCCAAGCACGGAGGTTTGTAGGACAGCAACAATTNNNNNNNNN
NNNNNGACCTAAGGTTTATCGAACTCACGGCAGTAGAGGTTGAAGATGGTCTCTCTTAAG
AAACCCTGCAATTAAGAAAC