Map Locations of contig_44864 (6455 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_44864

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60868 2 1687 bp MLOC_60868.1 Available Available None
MLOC_60867 4 1673 bp AK376524 Available Available None





CDS Structure of MLOC_60868






CDS Structure of MLOC_60867






Contig Sequence (6455 bp)

>contig_44864 6455 assembly3_WGSMorex_rbca.fasta
CAGTACATCAGTGTTACAAGCGGATCAATGGACGTCCCAGGAGGAAGGCAGGGTGACTCG
AAGCCCTTTGGCTCCTGCCTTAGCCCAATTCCTGGANNCGTCCTTGATCGCAGCGTCTAG
CTCGTCCATGAGATAATATTTTTCTGTCCAAGAATTTGTCAATACCAAAATAGTCCCTGA
AGATTCACTTGATAAAATTTACAACTGCCTACATTGTGTACTTCAAGATATGCACAACCA
AGTCCATAAATGTCGTTATTTATTAACCCTTCCGTGAAAGCCAACTCAACTTCTATTCTG
TTAGGTGACTGGAGGTTACCAAAATCTCCTACCCAACATCCTGTGTCACTCCCGATGAAA
ACCCTTCTCCATCTTGGAGTCGACAATGGTGACGTGTATCATCGTTTCCCCTCCTGACAG
AGCTGTCGTGGAACTTAGGTGTCCTAGGGTGTGTCATGGCATTGTATTCAGGCCTACCTG
TATTATCTTTCGGTAACGTAGTCGCGTGCGTTTAGGTTGTATGGTTATCCTGGGATATGC
TATGTAAGAGGGCTCTCTCACTACCTTGTATTGTTGGCCGTGTACTTTGGTTTGTGCTTT
ATCTATAAAGTGGATCTAGTTCAAACTTAAATAGGAACAGAAGAAAAATCATAGGTCGAG
CTCAGTCATAACAAAAAAGAAATTGAGAAATAGCGTATAAACTGTGTTGATGCAATAAAA
ACGTAGAAACATACTCTAGCTTCAATCAGGTCCTGTGTCCCAATGTTAACTACAGTACAA
CCAATGGCCTTGGCAGAGTTGAGACAAAGAGTGTGGTTCTCATTTCTCTCCCATGGATTC
GGATTCTTCTTTGTATTGATTGCTCTCTCGTCTATTGTGCCGGGAACAGAAACATTGATC
AACTTGCTGATTCAGTATAAGGTAAGGGAATAACTGTCTTAGATAATTTGTTAACAGAAA
CTAACATTAAGAGATGCAGTGGTACTAAAAGAATACAATGAGCATTTAAAAGAACATCTC
ACCAAAGTAGCACACCATCACCAATAAGATTAAATAAATCATTTGATGTTGGATCCAATG
GCAAGAAATTCTTCAGGAAAGGGTCCTCCCCGAGAAAATTATTGATATGATTGACATAAG
AAGTTTTTTCAGACTCATTAATAACGTGCAAGAGAGTAGTAGTGGACGCCTTCAAAAATG
ACACTGATCCCTTCAATTTCTTTTTGCCTCCTGATTTGCTGGTTCCCTTTGCTTGAAGAT
TTAAGTACTCCTAACATATTGCAAGATTGCACAACTCATTAAACAAAACAAAAACTCATA
CATCAGTGAAAATATTTAAATCAACAAATTGTATGCCAGGATGATCCAATGTACCCTAAG
GAATGGCTCAAATTCGATTGACTGGTCCATATCGGGGTAAGACTCGCTCAAAAAATTGGT
GATCTCCTCCTCAGTTAGAACCTCCTGAATGCCCCTAAGCTTCTCCATCACCGACGGCAA
ATCTCTTACACTTACATGCTCGGCATCCGATCTCTTTGCAGAAGTGAACTATATCGTGGA
ACATAAGAGGTAGCATTGTAATTACACAATTATGGAAAGGAAACAACACATGTTTTTTCA
AATGCATCAAGAGTGGCCTCCAGGAGTGCTTACTTTTGTTCGAAGCGTTCGGAGCTGCAC
TTGGGTGAACTGGCTCTGGAGCCATGGATCGGAGACAAGAACACCAACGCTAGACATTGT
CTTCCGAATTCAGTTTCACTCTCGTGCTAAATTAATTCTTGCACTAATTCGGCAGTATTT
GAGACCTACAATAAAAACAATCCAACCACGACCTTGAATCCCTAGGACTAATTAGCACAA
ACCTCTCTGATCAAATTCAGCACTATGTTTGTAGTATATGTATCAAGAAGAATAGGACCA
AAACTGGTGGGATCATTACACTTGCAGGAAAATATCCCCCAATGAATCGTTACCAACCTT
TGCGATGAAAAATTCTTTTTGAAAGGCTTTGATCTTCGTTCTTTCTGTCTTCCTTCCTTC
AGCAAAACTATTCACTACGCATACATTGCTCCCAGCTCCGCAGCGAACCCCAAGAACTAT
GGGGAAGCGAACGTGTGGTTGGATTGCAAAGAGCCATAGGATAGGAAGAAAAGGGAGAAG
CTAAAATGGTGGCTCCTTTTTCAGCCTCCCACTGATGCCTAGAATAGAAAAGCAGATAAC
TAATCTTAGAACGTGAAGCTTCCACGGACTCACTGCAGCTCTCCTCCTCTTCTCCCACGG
AGACCACGGAGTAGTTCCATGTCTCTCTCTCTTTCTCCAGCATGCTCGTCTTTCATGGGC
TTGGATGGCCCTGTTCCGCCACTCGGCTTTTGCTTGTCGCGGGAGCTATGTCTCGCCAAA
ACGTAATAGGGGAGCTCCTACTTGCCGCTCATTGCGGCAGGGAGCCCGTGCGACGCACAG
GGGGCGCCCCGACTGGGCCGGCTCAGTTTAGTTTTTTTTTTTCTGTTACTTTTTTCCTTC
TTTGTTTATTTTCTTTTTTGGTTCCTTTTTTCTTTCCTTTTTCCTTTTCGTTTTTGATTT
TAAAAAACGTTTTTCGAATTTGAAGAACAATTTTTAAAAACGTGAACAAATTTGGAAGCG
CGAACAATTTTTTAAAGCATGGACATTTTCAAAATCTTGAAAACAACATTTTGAAAAGGA
GAACAATTTAAAAATATCATGAACAAATTAGAAAGCGCAAACACATTTTTAAAACACGAT
TTTTGTTTGTATTTTGAGAACAAATTTTGAAACAACAACAATTTTTAAAGAAGCGAACAA
ATTTGGAAGCGCGAACATTTTTTGTATCTTGATAAAAAAAATTTGAAAAGGAAAACAATT
TTGAAAAACCCCGAAAAAGTTTGAAAGCGCGAACAAATTTTTAAAGCACGAACATATTTT
GAATTTTGAGAACAAATTTTGAAACCGGGAATTTTTGTAAAAAACGCGAACAAATTTGGA
AGCGCGAACATTTTTTTTAATCTTGAGAACAANNTTTTGAAAAGGAGAACAATTTTGGAA
AACCCCGAACAAATTTGATAGGGCGAAGAAATTTTTAAAGCACGGACATTTTTTGAATTT
TGGGAACAAATTTTGAAACCGAAAACAATTTGAAATAAGGGAACAAATTTGGAAGCACGG
ACATTTTTTGAATCTTGAGAACGAAATTTTAAAAACCCTGAACAAATTTGAAAGCGTGAA
CATTTTTTAAAGCACAAACATTTTTTGAATTTGGATATTTTTTTTGAAACTGAGAACAAT
TTTGAAAAAACGTTAATAAATTTGGAAGCAGCACGAACATTTTTTGAATCTTCGGACCAA
AATTTTAAAAGGAGGACATTTTTGTAAAAGAAATCGAACAAATTTGAAAGCACGAAGAAA
TTTTTAAAGCTAGAACATTTTCTAAATTTGAAGATCAAATTTTAAAGCCGAGAACAATTT
TGAAAAATCGTGAACAAATTTGAAAGCGCGAACAATTTATTAAAGCACGAACATTTTTTG
AATCTTGAGAACAAATTTTGAAACTGAGAACAAATTTCAAAAACCCCAAACAAATTTGGA
AGAACAATTTTTTTAAAGCATGAACATTTTTTGAATTTTGGGAACAAATTGTGAAACCGA
GAATTTTTTTGAAAAATCCTGAACAAATTTGGAAGTGCGAACAATTTTTTAAAGCACGAA
TATTTTTTGAATCTTAAGATTGTTTTTTGAAAATGAGAACAAATTTTGAAACCGAGAACA
ATTTTTAGAAAATACAGAACATTTTTTAAAAAGTGAGAACATTTTTCAAAATCCAAAAAT
ATTTTTTGAAAATCCAGAACATTTTTTGAAACAGAAACAGAAAATATAGAAAATAAACAG
AAAAGCATAAAGAAAATAAAAAAACGGCTCAAGGAACCTTCTAAAAGTTTTCCAGAACCA
AAAAAATTCGGCTGAAAACCTCTAAAAAGTTTCAAAACCGGGCAATGCAGCCCTCTACCG
GGTCAGCCCGGTCCCTCTCATACTGTGTGCAAAGCCTCGACACCGCTTCACAAGAGCAGC
AAATAGAGTTTTCCACGTAATAGGTCTTGCCTATAGCGTGGAGCTACTGGGCCGGCCCCA
TACTGCAGCTACGTAGGAGTTCTTTTGTGTGGTTTTCTTATTGATTATTTCATTGTTTTG
CATCGATTTTCTTTATGTTTTGTTTGGTTTTTCCTTTTTATTTTGTTCTTTGGTTTTGTT
AGTTTCTTTCTTCATTTTCCCTTTCCTTTTTCTTTTTTATATTTCTTTTTGAACACATGT
CTAATTTTTGCATACACATTATGTATATATTTTATACACATCAATAAATTTTTTATACAT
GTTTAACATTTTTTAAATACCTGATTATCACTTTTCAAATATATGTCTTTGGTGTCTCAT
TTTTTTGTACACATCCCTTCAGTTTTTTATGCATCAAAAACATTATGGTTGTATGCATCG
CCAGATGCACAGACCGGGGTCATCCTTCATTTCAAAAAAGAAAAAAGTACGTTTAAACCT
GGGAAATTACAGGAGGAGATAGAGGACAGTAAGTAAAGAGCTAAACCTCCTAACAACTCT
CTGCGGATACACATGCGTGCAACCTATGTATGTTACGTACTGCATATTCAAAGCCTTAGT
GGATGACTCAGCACACTGTGTGCCAGGCCACAAAACAAGAACTAGTGACTGCTTTCAGTC
CATTGTGGCCAATCAAACACGCATACGACGAAGAGCAAAGACTTCATATGTAGAATCTAG
TCACAACAGAGTTGCTCAATTTGCTTCAGACGCCAACCACTGATCCTAAAGAACTTGCGC
AACCGCTCACTATCGAGGATATGATCTTCGGCGCGAAGACAATCTATTGGATCATGGTGA
AGACTTTGGCTCCCAAGAGAGGTGCATCACCAAATTGAAGGCGCCATGTGAAACTTATTG
GTCTCTATCATGGGGTTCATGTGCTTCGATGCGGAGGACTTCTTTTTTAGTACAATTATA
ATTGTTGCACAACGGCCACTTATGTAGAAGCCATATGCAACATGGCTAATGCAGTTTATC
ATGAAGAACACTCAGAGGCAATTACACACAATGGTTGTGCATCACAGGTATTTTCTAGAT
GTTGAAGCTTCAGCTCCAGCTTCTATTCAAGCTCCACAAGCTAATGACTAAGAAAATTAG
TTCCATCTGAAGCCGCTCCAAGTACAGTCCCTCTGCCCGACACGGCTGTTCCTGAAGCAA
ATCCTACTCCTCGTAATTGGCAGTTTTGTTCACCTCTCGATAGTGCCCAAATAGGTTACT
ATATACTGAAAGCAATGATCCCTCGGTTAGGCGCTCGGATGAGGGACCAAGGCCTCAAAT
TGAGAGCAAATCACGGTGGAGATGAAGCAGCGACAAGACAAATTCATCAAGTGGCAGAAG
AAGCAGACATTCGATGTTCTCACTGAGTTGAATCTATTGAGGATTGTGCTCGACTCAATC
GCTTCTATGTTTTTATCGAAAAGGAAGATGACCCCCGACCTATGCATCTGGAAGATGTAT
GCAATCATTTTATTAATTAATCATAAAGACCTTACAAATTAGTACATCGAAAAGTCTGAA
GCCATCATCTTAGCAACATCTATCATTACTTACATCCACTTGATGAAAGGATGCCGATAG
TCCGAGCCTAATATGATACAGGGCAGACCCGTGGGTGTCGATCTTCGACGAATTGGAGGG
GAATTCCTCAAGAACACGAAGAATACGGAGATGAACGGGGAGAAATCACAAGGAAAACAC
TCAAGAACAAGACCAATCACACATCCACTAGACTCACCACACACAAGATCCACAGAGGTA
CATGAACAACAAAGGGAAAGTAAGGTACATGGTAGCGTTCATCCCAAATCCCATGGAGAG
ATGGGGCCTTGAATCCACCAGGGGATCTTCCCTCGTAAGGGGCCTTGGCATCCACTATGT
GGTCTTCTCACATGGAGGCATCTCCATGGGAGGAGGTAGTAGATTGAGCTAAGTTCAACA
AGTAATTGTCAATACATAGCTAACCCTAGAAAGAAGGTGGGAGTGGAGTATATATAGTGC
TAGCCACAAAGGTTTATCTCCAAACGATCCAAAGCTTGCACGTATCCGATCATCTTGATC
ATGTGTGGGCTCAGTGGATCACCTTCCTCCAGCTTACAATCCATCAAAGATCGCTAGACG
TTGAACCTTTTGGTCCTAGTGTGCACCTGAAACATGCTCTTGAGACTCTCGATCATACCG
AAGAGCCGCAATGTCTTCGAAATGTTGTTGCAAATCGGGCTCCATACAAGCCAGCATGAG
GCAGCTGATCTCGTTTGATTCATCAACGAGTTTATGGTAGGCATTCTTGGTGGTGGCATT
AGCATTATTGGTAGGTACCTTTGGAAGTGGATCCT