morexGenes - Barley RNA-seq Database

Contig contig_44850
Source Contig contig_44850
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44850 (7039 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_44850

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60848	5	2272 bp	MLOC_60848.4	Available	Available	LOC_Os03g12860.1, FRAME:+2, EVALUE:1e-73, 13103.m01477 protein homeobox associated leucine zipper, putative, expressed
CDS Structure of MLOC_60848

Contig Sequence (7039 bp)

>contig_44850 7039 assembly3_WGSMorex_rbca.fasta
TTTGAACTATTTATATTGTATTTAGTGGATGGTTTCAGCTTAATTCATGAATTTAAACCT
TATCGTGTGTGATTTTTTTTTTGGCCGGCATACCCTAATCTAAAATTCTAGATTCGCCAC
TGCTCGTTCATATCCCTAGTACGCATTGTCAGGATCGTTGCCTTGACGGTTAATGATTTG
GTCACGACCACTGTTGAGACTTTGAGGTGAACACTTTTTTTTATGAAACCAAAATAATTT
GGCGTTATAGGTCAATTAATCTCCTACGTCCACTGTACGAAATAAACTCAAACATCTAGA
AGTGATGCATGTTTTAAATTAGTGGTCAATTAATCTCGTGCGTCGACTGTACGGAAATAA
ACTCAAACATCTAGAAGTGATGCATGTTTTTAATTATGTGATCCAACGTCTACCGTTGCT
TAATTTCATGGATGATATGTGTGAGGTTCTGTACTTACGTACCACTACTAGTTTCCTCCT
CTTGAAATCATGGCATGGTACGAACACCTACGTCTTCAAGGCAGTCTTGCAACTGGATGA
GTAGCCAAACTCTGCCATGTGAGGAGCCTCGTTAGGGTATCTTTTAAACGTGATTCATGC
TGATATACAGACTCTGCTCATGCATTTTGGAGATGGTTTTTGCGGTTGGCAGTGGGCATC
GTCTATCGGCTCCCACAGGCCCCAGTTATTTGGTTTATTACGATTTGACCGCTAACAGCA
ATCGTCCACAGTTTGGTTAACGGCGGGTGGTTGGTCGTCACGAGGCTGATCATTGCGCCC
TTCCTGATCGTTGAAAGAGAACCCCGGTCATTTCATGGTACAAATCACTCTTAACAATGA
CACATCTCATCATGCACCCCCTCCCTCTACGGGGTTGTAGGAGGAGGAGCTGCCCACATC
AAAATTCATATTCAAAAGTGAGTGGAGAAGGCCTTCGCCATATGCGTGGCCAGTGCCCAA
AGCAACCTCTATATCCTGCAGTGTGTTAGGCCCTACGTCACCTTCTTTTTTTCCCCTGTG
ATCGAGCCCGACACTGGGACCCATGGTGCGTCCAATTAAGCGCCCTCGCAATTAGTTGGC
CTGTCCTTCTCCTGCCTATGCAAATGCCGGGCAATGGGAGGGAAGATGCATGGAGGTCAA
GAAGAAGGAAATAGAACACCGCCAACATCTCATGTGTGGCCGTCAAGGATCGATGGCATG
GTAGCCCTCGATGTGCAGTGACCCGGTGTCATTCGAGTTTCAATCATTCAAAAGAGAGTC
TGAGTTATGTGGTGTGCAACAGTCAACTGATCATGGTGCAATCCTGATAGTTTGGACGTT
TGATACGCATGCAGTACGTAGGTATGCGAGCTGCAGGCTTATCCTACTTGTACACGATGA
TGATCGGCGATGAATGTTGTTTTTTTACGAGGGTCTACGCCGTTGTTGCCTAAACTAATT
GAGTGCGTTTGATGTTTGATCAGAATTTCAAACTGGGAGTTTCTAAGTAATTGAAATTTG
CGTCCTTAATTCCTCCGTTGTTTCCTCTCTTCAACTCACCGGTACTATATATGCGCCATG
TCAGGCCATGTGATGGTGTACAAGACACAAAAGGAACGTGAACCAACCAGCAAAACAGTG
GAAGCACTAGTAGAATCGAGAAAGAAAGTCGTCCCATAATTAATTCTCTCCAGGCTAGTT
AGCTATACAACGCCCTGGTTAGCAAGCAATAGATGAGAAAGACGGATGTAATGTGAACTA
ACTCCAGGCCTATCATTGAGAGAAAGATGTCACAGGATGAGCCAGCAGCTCTGCCCCACA
CCACGCAAAAAAATAAAAATAAAAAGGCTCAGTTTCCAGTCCGTCCAGGGGCGCGTTCAT
GTCCTATGTGGAAAGCAAGAAGGTGGCCAAGGAAAGCGAGCTAGAGGCCAACAAGACGTA
GCTTAGCTACATGGAATTGGGAGGGTAGCGAGGTTGCAGAAAAAGTCCATGCTAGTAGTA
GCACTTGCTTGATGGTGATGAAGGAAAGTAAGCCGGGACTGGGAAGAAGCCACCAGGCCA
ACCACACGTCTAGTAAATGAGCACGTACGTAGGTGGTTCATATGGTTGGGTGGGCGCATG
ATGAGTCGTAATATTTTTGCCACAAGCACACGTACGTCCGTCCATTCATCCATGATCCAT
CCACCACAATCATCTGCGCAAATACTACAGTGCCTAACAATTATCGAGCCATGCATGCAT
GATCATCATGTGAAATACCGCTAGAACCAAAGCAGCAGGGGGTGCTTGAACGAACAAGTC
CATCGTCTATTATCTATACACGTACGTGCGTACCTAACTGATCTAGAACGCGCCCACCCT
CGGATAATAACAGCAGGAAAAAAGAAACATGCATGCCTCATCTTTTTGTATTGCCTACAT
GCATGATGCATGCGTGTGGGCGCGCAGAAGGGCCCGAGACTGATGTGTGCGTGCGGCTTC
TAATATTGCCAGCCCCTTTACACACGCGCGTCCACCTGGTATCCCTAATCATCTATAGAA
GAAGGGAAAAAAACGACTTTTAAGCAGTAGCGATGGGTGTTGAGAAGAGAATGGAAAATA
GTCGCAGGTGTAGTGTAGTCTGAAGTGAGGAGGAGGGAACACGCGCAGGGAGAGAGGGAG
ACGGAGGGCGCAGCACGGCACTGTGGGCTGTGGAGTCTGGACCCTCGTTGCGGACGGAGC
TGGGCTTGTCAAACATTCGATCCCAAGTGTGGAGTGCGCGTGCGCGTGCGCGTACGCATG
TGTGATGTGGGTTTGCATCGGGCTTGTCCCCCCACCCCCGGGCGGCTCCACACCTCCCTC
TTCCTCCTCAAATATTCTCAACCCCTCAACCAATTCATTCCCCTCACTCATTCCTTCCTT
CCTTCCTTCCTCATTTCCTCTCCTCTCCTCTCCTCTCCTCTCCTGCACACACGCGTGCAT
ACACTCCCGTCCCGCGGCACCTTGCAAGAATTGAACTGCCTTGCCACCACAGCACGGCGA
GAGGATACAAGCTACCTAGCCGGCGCCCGGCAAGCAGGCAGCGCAGATAGATAAGGTAGT
TTGCTGATTCTTGGGTCAAGCTAGCTAGCTAGAGACCATTGGGTCTGCCGATTCGTGCGA
CACGCCATGGCGCAGGAGGAGGTCCACGACGCCGGCCTGGCGCTGGGCCTGTCCCTGGGA
GGCGGGTCGTCGTCGGCACACCGCAGCAACAACAGCAGCCGGCTGACCCTGTGGGAGGCG
CCGTCGGCGGAGCCGTCGCTGACCCTCAGCATGCCGGACGACCCGACCATGACCGGCCGC
ACCGCGTCCGGCGGCGTGTCGTCCATGTCGGTGGGGGGCGCGGTGAAGAGGGAGCGCGCG
GAGGAGGCGGAGCTGGGCGAGATGGTGTCGTCCACGGCGGTCGTCGCAGCCGAGGAGGAC
GACGACGGCAGCACGCGCAAGAAGCTGAGGCTCACCAAGGAGCAGTCCGCCCTCCTGGAG
GACCGCTTCAAGGAGCACAGCACCCTCAACCCGGTACGTACCACCGCCGTACGTACGCAT
GCGTACTGCTCACGTTCGAATCGATTCACCGCAGATAGGTAGATAGATAGATAGATAGAT
AGCCGCAGATACCTAACATGGAGGAGTATCATCGTCTGCTGAGATCTTCTCTACTTCTCT
TTTTTTGTTTTGTTTACCCTACCAGCAAATCCACAAATTTGGTTTATTTTCTTCATCCAT
AAGTACGTATGAGCTACTGAATCGAAAAAGAAAAAAACTGAGTTACTGAACAGCCTTATT
TTTTGTTTGTGTGTCCTTTTTGGATTTGAGCAGAAGCAGAAAGTGGCTTTAGCCAAGCAG
CTAAACCTCAGGCCGAGGCAGGTGGAAGTCTGGTTCCAGAACAGAAGAGCCAGGTTAGTA
ACCTTGTACGTATTATACAATTATAAAAATACGCATAAGCACGTACTCCAGGTTATATTA
CGGTCTCCTGCTAGAGCTGACTTGCAACAATTCTTGTATTATACAGTATATACACCTCTT
CATCTTCTCAAACTAAAAAAAAAGTACGAGCAATCATTTTGTGTGTTGCACTTGCACTCC
ATCTCAATTCATTTTCTTTTACGTTCATGCATGCATGAGAAACAAAAAACTAACCCCTGC
CCAAAATATAATTACGGGTCATTTCGGTTCTGGTGGTGAACTTTCTGATAATTAACGTTG
GATCCCGTTACACGTGCATGCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTC
CTGAAGCGCTGCTGCGAGTCGCTCACCGAGGAGAACCGCCGCCTGCAGCGCGAGCTGCAG
GAGCTCCGCGCCATCAAGTTCGCCCCTCCTCCTCCGCCGCCGCCACCGCCCAACAACGCC
GGCCAACACCCCGGGACCCCGTCCGCCGCCGCGGCGCCGGCGCCGGCGCCACCGTTTTAC
ATGCAGCTGCCGGCCGCCACGCTGACCATCTGCCCGTCCTGCGAGCGCCTCAGCGGGACC
GCCGCCACCGCCGCCGGCAAGGTCGACCCCGACAGGCCCAAGGCCACCCACCACTTCTTC
AACCCCTTCACCCACTCCGCCGCCTGCTGATCGGCGATTCACCGCACCGCACGTACATAC
ACGACGCTCATCAACACCAGCAGCACCCCACCGCTTCTGTAGCTAGCTAGCCTAGCCTAG
CTAGCTACAAGTAAGCAACTAGCAGTGGCCGCCATGGCTAATACCTCACGCCGCAAGTAA
CATCTGATCCTGCAGGACATGGACATGGACATGGACACGATCCTCCTACTTTTGCTATTT
CTTGGTCTGGGGGTTTAGTTCCGAATCTTGTTCAGTTTAGCTAATCCATCAATCATAGAC
GCAATCCATAGACGATAGGTAGTCAAACGGCCAGCCGTGGTAGCTTTGTAGCTAGCTGGT
AGCTGGTACTCGAAGCGGCCGGCCATTGTATATTCTTGTGCATGCAGCATGTAACCGTGG
ACCTCTCCTTTTGGTTAGCTTCTCTGCCTTTTTTTCTCAAAAGCTAACTATCGGAGAGGA
GATAATAGATTAAGCCGCCGCTGTTGTAGCTGTGGTGAGTTTCTGGTCGTGTCAGGCAGT
GTTTGGATGATGACATGAGACAGATCTAAAGGCAGGGAGACGCTCCGGCTCTCCCTGTCG
GGTGCGTACGTGTGTAATGTGTATACTTTTCTAACTTTTTTTTATATGCATATACGTTTC
AATGATTGTGCCTGTCGGGCCTTAAACTTTAATCTTGCGTCCGTGTTGCTATCGCCTTTG
CTGGTTCATTTAAGTTATTATTAATGGGAAAGCTTAGCCTCTCTCTTCTGCTCTTGCTTA
ACCATGCATCTGTTCAGCTATGTTAATTACTACACCGTTGTAACCTACTTCTACCCGGTT
AACCAAGCCAAGTTTCATACGACCACTCCGCTTGACTAGAAAGGATCCAGCTCCGGGATT
GCCTGGTAATTAACGACGTACGGTTTCTGCTGCATCATCCATCAGATGTCGTTTTCAGTT
AGATCGTTGAGTAATTACCAGGTAACCAGAAAACGGATCATGACTCCTGATCTTCTGCGT
TGATTTCTCTATGCCTACGGATTGTGCGAGTGACGGCTTGCAAGACGTGACACGTAAAAA
CGAGAACGGCCATCGCACGAGGAGGCTCAATGTGCAAGCGGCAGAGTCCAGCGATTTCTG
CAGGTGCTCATTGGAAGTTTCTTACCGGCTTCTAGCACCTGTGAAGTGGCTCTGACAGTA
TAGATACTATAGTGTGAGTTACAGCGGTGTGGAGTGGTAGCGGTCGGTTCCACGCCGAGA
CATGGACGTCCATCTGAAGACCGTGGAGGTGGAGTGGTTTATGGTGGAAAGGCATCCCAC
CAATTTGTTAGTGCATTCTGGCCCTAGCATGAACGATCTATCATCAACATGAGCATGATG
ATTGAAACACCGCTTCATGTCCATGTCCATGATGAAAACTCTTGTCGTAACTTTCATTGA
TCAGGTTTAGTAACGACGAACTTATTTCTTTACCATGATGGAGGTGTTGTCTAGTTGTTG
GGTTGGTCTTCATTTGCTGGTCTCCACGATCAGGATGAAAATCCTTGTCTGCACCGTCTC
TGCTCACACATGGCGGCAATGGTATAGGAGCACCTACAATCGGATCTTTCATGTTGGTTT
CAAACGTTTGGGTAGACTGTTCGATCAGTGAATGTTCACAAACACGCGATCCAAACGGAT
CCCTCATATCCGTCTCAAACGTCGAGACTGACCGGCATCCCTCATATCCACTTCAAATAT
GAGGACGATACGAGGGCACGCAGACGCGGTCAGTCCGTCACGTAGGACACGACCCCATCC
CGGACCACTTTTTCTTTATTCATTCTTTTTTCTTTTTCTTCTTCTTCACTAATCACGTGC
AAATGATCAGACATATAAGAAAAATGTGACAAGTGCGGTTGTGCAAACGAAAAAGTAGGG
GCTTAAAACGGGCACGTCCGGTCGGGCATATAGGGGGGGTCAAATTTGCTTAGTCCAGAT
GTAGATGATGTGAGGGTGTTTACCCCTTCTTGAGAGTGTTGCTACGGATGAAGTTCGACT
GTGTGTCGCAATATGATGCAGAGCCCACAAATTTTAACCTCATCTAAAGAAGCAAAAAAG
TGGGAGCACATACAAACAATTGACATAAATATTATGTTATCTCTTAGTCGATTCGTCCCA
AACGGATCCACCATCCGGCCTTCTTCCTCCTCGCACCCCTACTTCCTCTTCCAATACGCC
GCTCGACACACATGTACCACCCTCCAATTCTAGCCTACCAGCTTGCTGCCACAAACCACT
TGAGTCGTCACTGCCATCATGCTATAGTCACCCCGACCATGTAACGCCCCGGACACACCC
GCCGGCAGTCCTCGAAGTTCTGTTCGAATGGGCTCTCAGAAAAAAAGGAATTCCTTATTG
ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTATCACATACACCACCACTCATCGTT
ACTCCTGGCGGGATCTAGA