Contig Data
morexGenes
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Map Locations of contig_44777 (5344 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44777

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60787 2 793 bp AK375253 Not available Available None
MLOC_60786 1 505 bp MLOC_60786.1 Available Available LOC_Os05g05810.2, FRAME:+3, EVALUE:6e-63, 13105.m00616 protein DEAD-box ATP-dependent RNA helicase, putative, expressed





CDS Structure of MLOC_60787






CDS Structure of MLOC_60786






Contig Sequence (5344 bp)

>contig_44777 5344 assembly3_WGSMorex_rbca.fasta
AACCCCTTATATATTGGGATAAATACCAAAGGGTACATGACTTATATTATAACTCTAACA
ATTATGATTATTGACGCTTCGGAGGATACATGATAATAAAGTTTTTGAAGATCTTTATTC
ATCTTTGTGTAGTCTAATGTATGCTTCTGACTGACAGTTGAGTTTCTCTTATAGTTTCAT
GTGGAGAGTTCCTTGGAAGCGCTCGACCTGAGAGCTTTGCAGTTCCTGTTCAATCCCATG
AAACTAGTTCATCAGAAAGTTTGGATCAAGGTCCTACAATTGTTTATGTACCCACGAGGA
AAGGAACTGTGGAACTAGCTAACTATCTGTGCAAATCAGGCCTGAAAGCTGCAGCGTATA
ATGCAAAGGTTGGCACCACTTACTGGAACATGCTACTTTTGTATAAGAGAACAGCTTAAA
TGTTTGCAGACTGCAGACATATTATCTGTTCACTTAATATATGCAGTCCTGTGCCTTTTT
TCAAGTTATCTGACACTTCCTTCCAGATGCCTAGATCACATTTGAGGCAGGTGCACGAGC
AGTTCCATAGCAATGCCTTAGAGGTAACCATAAATATGTTCACTTTTTTTTTCTTCTCAT
TTCGTACATGACTGCAATATGCTATGGACGGTTGCTCTTTTCCATTTATAGATGCAATTA
CCATGTGCTCAATTGCTGTTGTGCATATTTATTTTGAGATAGCATTGTTGATAAAGGGCA
TAGTATTTCCCATTTTGTACATTTCAGAGTGATATCGGTTCATACTTCCATAAGTCTGAC
TTGTATTGATACTTGATGGCACTTCTTTCCCTATAATTCTTCTTCAGCACAAATGGCCAC
TTTATAACAACAACAACAAAGCCTTTAAAATGGCCACTTTATAAATCCCAACAATATTAT
ATATCTAATAAATCCCATGTTATCAACATTCTTCAGTGTTATGCCATGCCCTTGAGAAAA
TGGCTTCAACTAAAGTGGTAAATCTCCTGAATCTTGATATTACATGTTTCATGTGTTAGT
ATACTTGGAACTGGGCGTCGAGCAGTTGGCTAGTGGTGGGGCCAGCTCGCGCCCAGCCCT
CCACCACCGTCCAAGCCTTGGGCTCCGCATGGTGTGTGCATCAGTTGTTTCTTGTTAGTA
ACTGTTGGTATTGTATATTTTTTTTTTTGCTTTATAGTATAGTTAATTATTAACTGAAAC
TTTCTCATGTTATCAATATTTTATTATTTCTTGCACTATCCATATCAGGGATGAATCTGT
CTCCCAAGTTTTCATAACTTGGTGTGCAATATATCATAAAATTTCCTATTTAAACTCTGA
AACTCTATCATGCACTTATGCCAAAAGGGAATGCTGGTTCCCTGGACACCAAATGATTTC
CTTAAGTCTCTCAAACTTTGCTGAACCCTTCAGTCTTTTGTGCCCTATTTCTAATGACCT
AATCTTTTTATACAGGTTGTTGTGGCTACTATAGCATTTGGCATGGGAATTGACAAATCA
AATGTCAGGAGAATTATTCACTACGGTTTACCGCAGGTTAGTTTGGCCTCCAGTGGTGTA
TTTCTTTCTGAACACTATTTTGCTGTCGACATGCGTGTATGTCTCCGTGAAAAGGAATGA
CTTTATTGTTCTGGACTTCTGATATACACAGAAAAATGTTCACATACTAATTTAGTTGTT
TATACAAATACCTAGAAGGCTCATATGTCATATGCATCCAAAGACCTGCTCTGATAATGC
CTTTTTTTTGCGACAACGCTCTGATAATGTGGATGTTAGGCAGGACAAGACATTTAGAGC
TTATATACATATATGTCGGCATGCCAAGCTTGAAATTTACAACCGCTGATTGGTTAGTGA
ATCACTACGCTGTGAAAAAATAGTCCCAGGTTGGATTACTGACCTAACAATCTAATATTG
TGCAGAAAGACTGATTTAATTACTCTCTTTCTCTAGTTTACATACATCCAAGTTGGGTTA
ACTTCTGGTTGTGTTTATTCTTTGTGTCTGAAGTTCTCTTGGCCCTTGTTAATCCAGAGT
TTGGAAGCGTATTATCAAGAAGCTGGTCGTGCTGGTAGAGATGGAAAGTTGTCAGATTGC
AGTGAGTTCTTATACTTCAGACTTGCTGTAATGTCGTTTGGCTTGTTTCTGGACGTAATG
GAGAAAATGATGAATCATATGCTAAGTAGAGAGTATTTATATGTATTGTACTCCCTCCGT
TCCTAANNNNNNNNNNTTTTAGAGATTCCACTAGTAGACTACANNNNNNNNNNNNNNNNN
ATACTTTAGAATATAGATTCACTCATTTTGCTTTGTATGTAGACCACTAGTGAAATCTCT
TAAAAGACNNNNNTTTAGGAACGGAGGGAGTATATATACAAAGGCGCAGGCAGTCTTATT
ACATTTTGATTAAAAATAAGTTAATATCTAGCAGACTCCTAAGTTTTTTTAGCTATGCAG
TCTTATTGCATTTGCCTTAAGAGCACTAGGAAATGAATCCTTCAGAGGATTTTTCAGTGA
CCCTAGAATCGACAGAAGCTACGCACTGCAACAATGAATCACATGGTGAGGGAAAGTCAG
ATAAACTGCGATACAGAGGAATACACACTTTAGATCCAAACGTTAATTGCCAGGGATTTT
CTTTCATTGACTTCCTACTGACTAGAGACACGGTTCAGTTAGTTTTTCAACTATGCACCC
TATTGCCATTGGTTATACATACAGGTGCCACTGCCTATATATGAAATTTAACTGATCTGA
GTCGGGTGCTTTCTTAATATGTCCCTGTATTATAGAGCATTAATCCATAGTTGCAATGGA
TGATATGATGCAAGATAAACACACTGAACTGTGATACAATGGGATAATGGCAAGGAAGTA
CATAGCATGAATGACATCTAGTGTGTGTAGAAAAGGGCAACTTCAGAAAAGGATGAATAT
CATGACTTTACTGCATACATTCTAATCTCACATACAAAATCTCGGTGTTCGAATGAAGTG
GAGATTAGATCAGATCATGAAGTAAACTGGATGGAAATTGACATAGTGCCACTTTGGTTA
CCTGCACTTAATCAGCTCTGTTGGGCATGCCAGGAAGGAGACCGCAAGCCCGGCACCAGC
ACCAGCGACAACCTGCTGCTTAACTGTCAATGGCACCCCAGGCTCCGATCTCAAGAGAGC
CTCCATTTGGCCCCTCACAGTGAACAGGAGAGCGTTGAAGGCTGCGACGGTAGCGAGAGG
AGCCCCCATTCCCTTATACAATCCCCTCGGCCCTTCAGCCGCAACTGTTTGCTTGACAGC
ATCAAAGGCGCCCGCATACTTAGGTAGCTGGCCTGGAGCAGGGCTGGGCTGGCTCTGGAG
CTTGACCTTGATGGTGTCAAATGGGTGGCCAACAACCAGATTAGCGATCCCTCCGACGGT
TCCGGCTGTCAAGTCCTTGGCAATGTCCCCCATCTGCTGAATACAATACAATGCAATCAA
ATTACATTATACTGTATTAAATCATGATTCATTCTTTTCTTTGCTCCATGTGAGCAGGAT
TTAGGAGCATATGTCCTTTCAGGATAGTTGCTTGATCATATGTAATGTACTAGGATACAA
CTGTGAGCAGGATTTGGGAGCATATTTCCTTTCAGGATAGCTGCTTGATCACATGTAATG
TACTAGGGTACAACCGTGAGCAGGATTTGGGAGCATATTTCCTTTCAGGATAGTTGCTTG
ATCATATGTAATGTACTAGGATACAACTGTGAGCATGATTTGGGAGCATATTTCTCTTCA
GGATAGTTGCTTGACCACACATGTAATGTATTAGGACACAACAGTGAGTAAAACAAACAT
GGTTAATAATACACGCGAGCAACACAATGATCTCACAGGTGAGAAGTAATCCAGTTGTAG
AGCCACATAAATTAGTTGATTGATCGTTACACGTTCAAACCGCACACAGATGCATCAATT
AACAGCCGCACAAATCTTTATTCCTGCATACGCGGTGAAAGGGTCTGCATGTCTAACTGA
AAAACGGAACAAAACAAGATAGAGAGGGCATGTATCTATCAGGGCGGGGCACGGTTGGGG
TTCGTTCGGTAGAACCAAAATAAGCTTGCGCCCGAGAACTAAGCCGTCGTATAGGATCAA
CTCTGACCGAATACTGCGCGCTCCAGACGAAGAACCTGGTGGAACCACGTACGCGGCACG
CAGGGACTGGTAGGCATCGGACCAGCGGGCAACCGCCGGCGGCGAACAGGACGGAGAGGG
CGAGCGAGCGAGCGAGCGGGGCCACGATCCCTCAATGCCACGGGGCGAGGGAAGAGCGGC
ACGAACCCTTGCGCGAATCCGTCGGATCACGGCGTGGAAAACGAGGAAGGCGGCGTCGCT
TACCGATAGTGGAGGAAGGGATCAAGGCAACCCCTGCCGGACGGTGCAGCAGCGGCGGGC
CTGTCCGTCTCCTCGCCGTGGGTGAGGAGTGGGAGGGGGGAGGAGTGATTGGGTTGGAGA
AATGGGATTCGGAATCGCGGGGCTGCTGCCTTTTTGGACTCGGGGTTTATTCAGTCAGGA
AGGGCACGGGGTTCCGGGCCTGGCCTGGGTTCGGGTTGGGTTGGGTTGGTGGCTCCTCCC
TGATTCAGTGATTCCCTCCCACTTTCCTTTCTCGCGCTCTGCTCGCATCCCGTCGGCGAT
GCCATGCCCATACGGGGTAGTAGTAGCGTGTATACGGAAGGTGGACACGCTGCCGTTCCA
CGGAATCATTCAATCAATCAATCAGTCAGTCGAGATCTGATCTGATCTGATCCGGGGACG
AGGGTCACGCACGCACTTGCACTGCTGCTGCCTGCACGTGTTCTCGGTGGCACATGGAGA
TCGGTGAGAAGCGTGCTGTGCTGTGCATCATGGGCGCTGTCGCTGCGGATTCCAGGGATC
GCTCGTGCTGCCATGGTGCCCAGATAGAGTACCAAATTTAGGATCAAACTCTCAGACGAA
CCATCACGCAAGCCTGGAAGAGAACCGTGCGGCCGGCCGGCCTGACTGCGAAGCTAACAA
AAGTGAAGCCGGCCGCACTGTGGTTGGTGAGATGGAAAACGGTGTCCACATTCGTCGCAC
CGGCCAGGGTTGAGAAGTAATCAAATAAAAGGTCAGAGGGTGATGCAAACTGATTACGCA
AAAGATACTGCAAAGAGTAAAATACAATTAAGATTTGAGAGAGAGGCGGCGACTCCCCTG
GCGGCGACGTCTAGGGTTTACCTTCCCTGACGGCGACGTCTAGGGTTTGAATTTGTTCCG
GGTACGAGAGGAGTTCGGCTTCTACTCCAATTCGGGCAACGTGGATACAGATACATATAC
GCCT