morexGenes - Barley RNA-seq Database

Contig contig_44763
Source Contig contig_44763
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44763 (6483 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_44763

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60773	2	2988 bp	MLOC_60773.1	Available	Available	LOC_Os04g50970.1, FRAME:-1, EVALUE:1e-30, 13104.m05182 protein seed specific protein Bn15D1B, putative, expressed
CDS Structure of MLOC_60773

Contig Sequence (6483 bp)

>contig_44763 6483 assembly3_WGSMorex_rbca.fasta
AGTCGATATAACGCACTTTCATCCCAAAATCAAATCAGAAATCGCCCAAGAAAGCAAACC
TTAACCCTAACCCTATTTCTGCAACTCACCTGGTACTGCATGCCGTCGGAGGAGGAGCTG
ACGTACACAAGAATGGAGTAGTCGTTGCTGCTCTCATCCTCGTACACCATGGCGCGATGG
CGGCGGCGGTGGGGGCGGTCGCGGCGGCGGGAGGAAGGAGGGACAGAGCTCGACGAGGAG
GAGCGACTAGAGTGGTTAGGGGGTCCGTCTCGGTCCGACAGAGCCCACTAAGACTGAGCG
CGCCCGCCTCGTCCTAGTTAGCGCACTGGCACGCGTCGATTGGCCAGCATGTCGCCTGAT
AGGTGGGCCCGCAATGTTAGATACATGGTCAATACGCGGTTATACGGATGTCAGTCCATT
TTGTAACGATTAGGCCGAATAGTGATACTGAAGTGCGACATGCATGAACTGTGGTACCGA
TTCGTTACATGATGCTGAAGAGTGGTATCTCCATGCAATTAACTCGCCTCGTTGGTATGC
TTACCGTCGGTGATGGGCGCCAGGCGTGTGATCCGTGTCCCCTGTGAGTTTTCTGAGACC
TAGTCGATTAAGGTTCCGGTTGATCCATGTGAATTCAATCAACTTTCGCGGTCTTCAAAG
TTTCTACATGTCCTTATTAATGTTTTCTTCTCTCACAATGATTGCTTCACGGATCTAATA
GTCACCAACGTCTCCTAATCTACATCAACGCCTTGATCGTTGCCTTTACAAGTTTTTAGG
TTTAAGCCAAGGCGGTGGCCCTATTCTCACGACCCGTCCCACCTGGATGTAGAAAGAAGT
CTCCTTTGACACTCCGAGGATCTGAATGTTTTTTTAGTTTTGTGTGTATGTGTGTTTGGA
TGGACACGTGGCCCTGAGTTGTTGCACTTCAGTGGGAAATACAAGTTGGTTCCTCGTTCT
ATATGCATCCTATACAAGGAAAAATAATAATAACTAATTTAAAAATTAAAATAGGTTTAA
AGTATTTTTATATTAAATTTGACTTTCTTTTGCACTAGTATATAAACTTTCACGAAAAAA
ATACGACATTGACTTTTGGACAAAAAACAAAATTTATGTGCTATTATAGGTGACTATTCA
TACTATTTTGACCGAAAATTACCTTTTTTGAAAAGAAATCAAAATGTAATTTTCTTTTTG
TGGATTTTTTCTTTCAAGTACAACAAAAGTTCAAGTTTATTTCAAAATTATTTTTCGAAT
TTTTAGACTTTTTATTGAATGTTAAATTTCTTTTACATGTACATACACCTAGGTTTAAAA
AGTTCCCCTTCCACTTGAGCTCACTACTTTCAGGACAAACCATGGCTGCACTCGTAACCT
TGTGCGGGCGGATGTACCAGAAATTTTGCTTGATAAATACTTTTTCTGTCTTAAAATAAG
TGTCTCGAGCTTAATACAATTTTATACTAGCTTTAGTATAAAAAAGTTAAGACACTTATT
TTGGGACAGATGGAGTATATAACAACCCCAAACCTAAGGATAGAATTTTAGCCTGCTGAA
TTTATCCAGAACATTCTAAACTTAATCTTTGCACAGGATAGCCATCAAGAGGATGCATGA
TTCCACATGTCTGTCAAAACGCCGCCTTTATTGGGAAAAGCTGGCGATAGACAAATCTCA
ACCACTCAAAATTCAGACCAGAGACGCGTTCATCAAACACCAAACAATTGCAATTCTTGC
CACTTTCAATACTGAATGCCTGACCCACACATTACTGGTCTCAAACCAAGGCCTAAACTA
AACCAAACCCCCAAAACGCATTGTCAAGATCTTCGTTATTAGTAATTTGCGCGATCTGTT
CTCAGTTGATATATGAACGCATTGTTAAGTGGTCTGTGGCTGTGTGAAAAAAGAGTATTA
GCACATCTATCACATACTGATGCCAGCCTTTACAGTTAATTAGCAAGACATCTGCTCATT
GCATTGCCGAAGCAAACCTATTTCAGTGTCGGCAAGGGCAGGTTCACAGATTCCTGTTGC
TGTTCTTCCACTTGTTCAGAACAGGCTGAGCAGATATCGTGGGTGGACTCAGAACCTTGC
GCACGGGGATGAGAAATATTTTCAGGTGGATCATCAACACCGTCTTTATTCGGAAAGGCC
GCCGGACACATGGGTCTCGACCACGGGACAATCTAGAGCGTGGGACACGTTGATCAAAAT
GCAAGTTGGTCAGACGGTTTTCAAGTTCCTGTCGACACTGAATGCCTCACAGACTGATCT
CAGACCAAAACCAGCCCCAAAAGAGCACAACCAAAACAACATCAATTTGCAAGATCAAGA
GACGCAGAGGCTACCAAACACTTGTAATAATACTGGTTTTCGACGGGAGCACATCACTGT
CATCATCATCACACATCTTTCACAGGTTCTTATTCCAGGCAGCAACACCGCGTCACTACT
ACCGGTTCTTCTTCTGGTGCCTTCCATGACTGTACTATAGCACAAGCACGCTACTAGAGA
TAATAGTTAAGTAGGTGGTCGAGCCCAGCTAAGGAGAGTGATAGAGATGTCGAGCTGGGC
TGTGGTCGCCGGCGGCGATCAGGCGACGGGGGGCTTCTCGACGTCCTCGAGCGGGCGGAA
CCACACCTTCTGGTCCAGCACGGAGGCGCCGCCACCATTCGCGGCGCTGGCCGGCGCCGC
GAGGCTGGCGGACAGCTTGGGGTCGACCGCGGCCGGGCCGAAGACGCCGGTGGTCGGGTG
AGGGCCCCAGTACTTGTCTGGGCTCCCGGCGCCGCCGATCACATCGTCCGGCACGAAGGC
CGGGCGCACCTGCTCGTCCACGTTCTTGTCGTAGGCCGACGCGTGCACCGCCCTCCTGCA
AAAACACCAAACACCAAAACCGGATCGCTCGTTAATGAGGTCGTTGGATCCTACATACAC
AACGGTACCACGTTGACTTGATGGTAAGGAAAATACTCCGTTCATGATGCAAAAGAACGA
TGATGAAACAATGCACGTACGCATCACGGCGTCAGTTGATTATATATAAGCCATTGCATT
GACTAGCAATAGGGCAGCCCAATGAGTGAGCGTTAATTAAAAGTCCTATATATGTGGGTG
GGTGTTACCAAGATTTTATTGACTAAATGAAGTTATTATAACTATGTACTCCCTCCGTCC
ACAAATAAGCATACATATAGATTAGTACTTAGTCAATTTTTAAAAAATTTGACCAATTTT
ATAGTAAATAGTAGCAACATATATGGCATGAAAATGATATATTTGGAAACCTCATGTAAA
GGCAAATCTATTGATACTAATCTGATGTCATAAATGCTAGCACTTTTTCAATAAAGTTAA
TCAAAGTTTAACTAGTTTGATTGACAGAAAAGAAAAAAATACACTTATTACCGGGCGGAG
GGAGTACATAAGATCTTGACCGGTGCGCTGTCCGTTTGCTTGCCATTAAGCTACACTTTT
CCATCTTTTTATTATTTTTTTCTGCTCCCGTGGGCAGCACAAAGTGTGTTGTTGGTGCCC
GGGACGGCGAGTTCACGCAAAGAGTGCCGTGCCGTGCCGTGTGGGCGCCCATAAACCAAT
TTTTCTTTCAGTTCGGTACGCACCATAGAACGAGCCCGGCCATGCGTGGTGACTGATGGT
GGCACGAAGCACGCCGTTTGCGCTGTGGCCGGACTCCACTGGCTGCCTTAGGTCAGTGAG
CAAAGAAGAGACGGCGGGAGAAGGTGGGGCAGCACGACGGTGGGTGGGTGGGTGGGTCTT
GTGGATAAGACCGGCGCCATCATCCTACTCACCCTAGCGTGTACGTGCACCCAGTACGTC
CGCCCCGGGACCCGATGGACGACACGTCGCCCGCCGGCCGGTTCAGATCCGGAGCCCAGA
AGAAGTGGGATCGTGCAGGGCCAGACCGCGGGCCCGAGGGTCTCATCCGCGCCTTGATCT
CACGGCAACCCCGACCGTGGGCGCCACCACCAACCTCTCGCCTCGCACCAGCCCCATCCT
TGGAGTGAAAACCAAGGGAGCGCTCAGGCCGGCAGATGGCGGACGGACGGACGGACAACC
ACCCCGCACCTACCCGTCCACCCATTCGCTGCCGTCAATAAAATCTCCCAGAAAGAAACA
GAAACGAGCGACCGACCCGTCCGGGCCGTGAATAATATCCTTGCACTATCCCTTCGCCGC
CGGGGCTCGGGTGATGTCTTGGCCATCTCCGACGAGCCGGCCGCAACTGGGAGGCGCAGA
GAAATATCTCCATGGATCTGGCCTTCTCTGCCTTCTTCTGTGGTGGAGCTCTCTCCTGCT
CTGCAGATTTATCTTGACATCCGTCCTACTCATATGATGTGCTGCTGCTACGGATCGTCG
ACGCATATGGGCAGGAGAGATGAAAGATATTTTTGCTGTTCTTATTACAGGGACCAAACA
AGTTTGTGAAACGGAAGCTTTTTTTAGAGAGAGAAAAAGGCACTTGCGCCCTGCTTTACA
AAGAAGTTTTGTGAGCGTTTCCAAGGCGGGGAGGACGTGACTGAGAACTCGAGACACAAT
CTTTCTAACTTTGGGTTGGGTTGGGAAACTGTGTTGCAAGTTCTAGCGCAGCACGACGGT
ACGTACCTATCCCCAGCGCCGCTTCACAGAACACGGGTTAATCAATTTCCATACCAAGAT
GATGATTGTGATGGCGAACCGATGGGGGAACCAGTACCCACGGCAGCCGAGGTGAGAGCA
GCAAAAGGAACCATTTACAAATCTCCGGAGCAACTAGATCTCGGAGGCACTGTTGAACTA
GCAGCAGTAGTGGTACTGATCTACTTCCAACGTAAGTACGTATGCTAGTACTCTGATTCT
TTCTTTGAGCTCACAGGAGGCGTGTGAGCATACCTCGGGGAGGCGTTGGCGGCCTTGCCG
GCAAGGACGCGCGCGACGAGGCTCCCAGCGATCACCCGCCCCTTGGAGGTAGCCACTGCT
GCCATGCAAAGGTCGAGCCTGCTGCCGAGAGGGAGGAAGGCCAAGGGAGAGCCTCTGCTC
TGCTCCGATCCGAGACGGTTGGGGGAAGAAGAGTGGGTGTGGGTGTGTGTGTGGGGATGG
ACTCCTGAGTTCCACACCGCTCTGCCGTGCCGGGTATTTATAGTGGCGCCCGGGCGAGGG
GGCAGGGAAGGGAATACCAGGGGCGAACGGAATGAGAAAAGGGGAGCAGCCGTGCTGACG
GCAACCCTGGGTGCGTGCTTTGCTGCTAATCGCGATCGCCACAGGCCAGCTAACCGCACG
CCGTTTCTTCAACAAGAATACGTGTATTGGGTGCTGATCATGCACGTATCGTGTGCGTAT
ATGCAACTAGTTTGCACGCATCGTGCGTACGCACCAGATCACACGGCGGTCGTGACCCGA
GGAAAGCGCGGCTTGTACAATGGTGCAATCTTACGAGTGTCATCTGTGATAAATGATGAG
GGGAAGAAGAGAGAACTTAAAAAAAAGACTTTGTCTTCTTTTATTTAGGACATGTACAAT
GGTTAATAAAATAGTTTTATCTTAAATCTTTGGATGTAATTTAGAGATAATAAAAAAAGA
GTCTATAACGGGTCATCTCTTAGCCTTATCTTTTATAATTAGCTATTCTTAAAGACATGA
TGAGACATATTATGCTAAAAGACCATCTTTTGTCTTTTCTTTAATAAGAGAAGGCAAAGC
CTTTTATCGAGTTCTCTCTTCTCCACCTCATCATTTATCATATATGGCACTCCTAAGATA
GCATCATTGTACATGTTCTTAGGACATGTACAATGGTTGATAAGATAATATTATCTTAAA
TTTTGCATTTATTTAGAGATGACAAAAAGAGAGTCTACAATGGGTCATCTCTTAGCCTTA
TCTTCTATAATTAGAACATGTACAATGGTTGATAAAATAATCTTATCTTAAATCTTGCAT
GTAATTTAAAAATGACAAAAAAGAGAGTATATAATGGGTCATCTCTTAGCCTTATCTTCT
ATAATTAGGTATTCCTAAAAATATGATGAAACATATTGTGCTAAGAGATCACCACTTGTC
TTCTCTTAATAAGAGAAGGCAAATCCTTTTTTTCGAGTTCTCTCTCTTCCACCTCGTCAC
TTATCCTATGTGGCATTCCTAAAATAGCATCATTATACATGCCCTTAGTTATTCCTAAAA
ACATGGTGAGACATATTGTGCTAAAAGATCACATTTTGTCTTCTCTTAAATAAGAGAAGG
CAAAGTCTTTTTTTCGAACTCTCTCTCCTCCAACTCATCATTTATCCTATGTGGCGCTCC
TAAGATAACACCATTGTACACGCCCTTAAGAGGAGACAAGAGGTGATCTCTTAGCACAAT
ATGTCTCACCATGCTTTTAGGAATACCTAATTATAGAAGATAAGGCTAAGAGATGACCCA
TTATAGACTCTCTTTTTTGTCATTTTTAAATTACATGCAAGATTTAAGATAAGACTATCT
TAT