Map Locations of contig_44728 (10927 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44728

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60749 3 2386 bp MLOC_60749.2 Available Available LOC_Os01g65480.1, FRAME:+2, EVALUE:3e-163, 13101.m07075 protein dnaJ domain containing protein, expressed
MLOC_60750 2 4530 bp MLOC_60750.1 Available Available LOC_Os01g65490.1, FRAME:-3, EVALUE:7e-176, 13101.m07076 protein DNA binding protein, putative, expressed





CDS Structure of MLOC_60749






CDS Structure of MLOC_60750






Contig Sequence (10927 bp)

>contig_44728 10927 assembly3_WGSMorex_rbca.fasta
CGCTCCCAGCCCCGCCACGTGAAATGCCATTAGCCCCGGTTCGGGGCCAAACCGGGGCTA
GCATTAGTCCGGTTTGATTAGTCTCGGTTCACCAACCGGGACTAATGGCCCAACCAAACT
GGGACTAAATGCCCTTTTTTCTATTAGTGACATCAATCTCAAAGAAGCGTCGACCTGGGA
TGGCGACGATGAAAGGTGGAATGACGTCTTCATTATGGCGTTGGAGTCTTATGACACCAC
CGAGTCGGAGAAGGACAACAAGGTGTAGTCAGCCGCCATCTTTTCTATCGTTTGTGTGAA
CTTGTTTGTCATGAACTTGTTTGTGATTTAATCTTGTTTCTGTAAACTTTACCGATCATT
TTATACGTGTTGTTTCTGCGTGGATGACATAACGCGTTCGATTTTACATCGCCTGGTGCG
TTAAAAATTACAGCGCCCGTGAAGCAACTGACTATTGATACGAAAAACGACGGTCACACG
TCCTGTAATTTTTTTTTAAGCACGCGTCAGTTGGAAATGCTGTTACATACATACGGGGAC
CAATTGCAAGATTTTTCGCAGACGTGAGGAATGGAAGGCTCCATCGATTAACAATTCAAC
CTCACGCCATTGCCCCACATGCACTACCACTAGTGATAGTAACAAATCTCTCTCTTTCTC
TCTGGCTCGGTCGCTCCAACGGGCTTCAAATAGATCGCCCTGCATAAAAGCCACTCATTT
CTCCCACTCGCTCACTCTGTTTCCGCTCTCCTCCTCTTCCTCATCCTCTCTGCCACTAAC
CACCTCCCTCTGCATCAAACCCACCTCCCTCCTTCCGTCCCCTGTTTCTCGCTTTCCCCC
CCGCGACCGAATCTCCTGCGGCGCCGTCCCCCTCCAACTCCAATGGTGAACCCGCCGGAG
CTCTACCACCGGATCCTCGACGTCCCCAGGGGCACCTCGTTGCAGGGGCTCCGCGCCGCG
TACAAGGGCCTCGCCAGGAAATGGCACCCCGACAAGCACCCGCCGGCCTCCAAGCCCGAG
GCCGAGGCGCGCTTCAAGGCCATCACCGAGGCCTACGAGGTGAGTGCCCCGCCGCCTCTT
CCCCGGTCACCTCCCTGCGTGCGCGCGTCGCCGCCGTGGGAATCGCGTTCCTGATTCGCT
GTGCTCGCGCGCGTCGGCGTGGGCTTCCTTTGGTTGTGCAGGCGCTCCTGGACCAGCAGG
AGAACAGGGCGGTGTTCGGGGTGTGCAACGACGACCGGGCCAGCGAGATGTTCGGGACAT
TCGGCTCCGGAGGCGGCGGCGGCGCGCGCATGGCGAGGACGCGCAGCGACGACTTCTCCA
TGAGGAGCGCGCCCGCCACGCCGGCCAGGGAGTTCACCAAGGTCTACAGCTCCGGCAACA
CGGGCGGGCGCCGCGCCTTCGCCGAGTTCTCCAGCTCCATCATGCGCAAGGCGCCGCCGC
TGGAGCGCACCCTCGAGTGCACGCTGGAGGAGCTCTGCCGAGGCAGCAAGAAGCAGGTCA
AGTTCACCCGCGACGTCGTCACCAAGAACGGGTACTGCCGCTCACCGCTTCCTCCTCCCT
CCCCCCACCTAATCCATGAGCAGGACTGAATTCTTCAAGAAAACGAAATACTATCAATTC
ACGCGGAACAGGCCTGATGTGATCCATCATCCATCAACATGGGAGATTTCGACGGATCGA
TGCTTGAGAAATTTCAGGGTAGGCAAGAATTCAGACTTTGCTCCTGACGGCGACGTCCAT
TCCACCTTGGCACCTTGCGCCCTCGCCCCAATTTGCCACGCTGTTTTCCAAATCCTCGAT
GCACAGTAACCCAGCACCATTGCCGCATCCTTTCCAGCCAACGCCGCACTTCTTTTTTAC
AGTGGGTGAACTGCTTTATAGCATGCCTGCCTGCCTGCCTGCATTCGTCAGGGGAATATT
TAGCTTACTTTGGAACATAACAACCAAACCTTTAGGCAACTGCTCTCCGGTGGCGCGCCT
TTTTACCTCCTCACGGGCATCTATGCTATCCTTGCAAAGATTATCCTACCTAACATGAGA
CGTAATACCTCCACTAATGATGTTCTTGGAAAGGGTTTAGTGTCAGGGCCCTGTCTCGAG
GGGAAAATTCTAAGGCTTCAGTTGCTTTCCTTGCCGCATATGTGTATGCAAGTTTGTTGG
GGACTTTGATTACCCTTCTTTTGGACCTATAATCTAACAAAGATGTGGTCCTTTGAGAGT
ATTCATTCATAATTTGGTTTACATGTGAGGGTATGGCCGAGGAGGGTTCAGAGACAATGA
CTCCTGAGCTTCCTTGCTCCTTTAGACTCTATCCCCTGGGAATGTTGGTGAGCTAATCGC
CATCACATGATTAATGCCTTTGACAGGTCAATAGTTAAGAAGGAGGTGACCCAGACGATC
ATGGTGAAGCCGGGGTGGAGGAAAGGGCACAAGGTCACCTTGGATGGCATGGGGGATGAG
AGGCCGGGGTGCCTACCTGCCGATGCCGTCTTCACCGTGGCCGAGAAGAAGCACTCGACG
TTCAAGAGGGTGGGCGACGACCTGGTGCTCAAGGCCAAGGTGCCGCTGGTGAACGCGCTC
ACCGGCTGGTCCTTCTCATTCAGGCTCCTCAGTGGCAAGAAGGTGAGCTGCTCGTTCGAC
GACGAGGTCATCTGCCCGGGGCACGAGAAGGTGATCAAAGGGGAAGGGATGCCGATCGCC
GAGCAGAGAGGCACGCGGGGCGATCTGAGGGTGAAGCTCGAGATAGTCTTCCCAGATCAG
CTCACCGACGAGCAGCGCTCCGGCCTCGCTGAAATCCTCAAGGACTGCACCTGAGCGAGT
CTGCAATGTTGTTGTTAGGCCCAGCTGTACGTGTCAAGTTTTCCCGGCCATGCTGTTGAT
ACCTCTCCAGAGGGTGTGAGTACATAAAGAGATGGGTCCTTGTACATACAGTTTTTTTTT
CTCTCTCTCTCTACATATATGTATATGAAACGTGAGTTTTTTTCTCTCTCTCTACATATA
TGTATATGAAGCATTATGTGGATAGTACATGCTTGGCCCATGAGCTGTATGTACACGCGA
GATCTCGCCTTGTTTTCTTGGCCTCTTGATGCCTCCAGTTCATTCACTCCATTAACTATC
TCAAGGTGCAGTTAATTGGTGGTCATTCCGTCAGTTACTAGTGTGCGCTGGTGCCAGCAT
GAGCATCGCCTAATCCCTTGCTTGGCCGAGGAATTTACAGGTTTGCTTTCCTGTCACCAA
CTTGACACGCTGTTCATGCTGGTGCTGCTTAAATCTCAAGGAATTCAGTACAGTTAACAA
TTTAATCATACTGCTGCAGATGCTTGGATGGGCCATTTGGTAGGCGAGAAAAGCCCGGGC
GATCTGGAGAAATCGACGAAGCTGGACCATGGCAATGAATTGCTCGTACCCGAGCGAGGC
GTCGAAATTGAATGAAATGATCTAGCTGAGGGGAGGGGAGGAGGAGCTGGAATTGATGGT
TGGTGCAGTGCAGTTCCTCCAGCAGATGTTGGGTCCCTGATGCTCCTGGAAAGGAAAGAG
CAACCAAACCAACCCTGTTGGGACTTGTGGTGGTTCAGTGCCAATTGGCGTTTGGTAGCC
CAGCGGCAAGAGAAGGGAGCAACTTGTGTGTGCTGCACTATTGCCAGTAGGTGCTGCACA
AACACCTTGGGACAAGTAGGCAGCAAGTGCTCCACCAGTCAACTAACCACACTGTAGCAA
ATTCGACAAGATGCCGGCAAATGAAGAGAAGCACCTTCTGTCCACGACAACGTCCTAAGT
TACAAACATCCGATCCGATCATCGCCGGCGGGCGGCGGCGGAGACTGGCTAGTAACCCAT
GACCGCCGACGACATGTTGAGCAGGGGCCCGAGCGTGTCGGGCGCGAACTTCCTTGCGAA
CAGGAAGCACATCGACGTCGGCCTGTCGTTGTAGTAGCAGGAGGGCCTGTCGCCTTTCCA
CCTCCTCCGCCTGATGCCCTGGATCGCCGCCGCCGTCACGTTGCTGGCCGTGTACTTGGC
CGGGTGGGCGCCGCCCTTGGTCCAGTCGACGTACGTCACCGTGCGGTTGGCGTTCCGGGC
GCCGTGCAGCATGTCCACGGTGGTCGGGAGGTAGTGCTCGTCCGGGTAGCACGACGGCCG
GCAGTGCCGCCGGAAGAGCGGGTAGTACTTGGTGTCGGCGAGCACGCTGATGGCCAGGTC
GCGGTTGAGCTCGAACCACTGGGACCCTTTCCTCCACTGCGGCAGCCTGATGGCCGGCGC
CATGCGGCGGCTGTACCGGCCCTGGCACTGCTTGGTCTGCTGGAAGTAGACCTCCACGAA
GCTGTGCCGCGATCCGACGAGGTAGTCGTAGACCGCCCGGAAGCTGTGCAGCGGGATGCA
GCTCTCGGAGAGCAGCACGAAGCGCTCGTTGGAGAAGTCCAGCAGCGCGTTCGCCAGCAG
CCGCTTCTCCGCGTCCATCAGCGATATCGATCCCCACGCGGTCTCCTGCACACACGCGGA
AAAGAATTAATGGCCGCACCGCACGTGAGGATAAGGTGGTGAGCGCGCCGGCCGGCAATG
GCACCGGCGGCATTGCTCTGTGATGTGTCGTGTAGCACGTATGTACGTACCTGGCTTGGG
ATTTGACGGCCGTAGAAGGGCGAGTCGGCGGAGACGTTCACCGTCACTCCCGGCGGCGCG
TGGACGTAGACGGAGAAGCGGTCCTCGTGGCCGCGGAAGAAGCGCTCCCAGAGCGGCGCG
AGCGGCAGCTCGCCGCTGCCGGTGAGGAACATGAAGGCCACCTTGGGCACGCGCTTGAAC
GGATACTGGGCGTCCACCGGCACCATGGAGGCGCGCCAGAAGAGCTGGTCGTCCGTCATG
TCGTGCATGAGCTGCGTGGGGGCCACGAACTCGGCGAAGCCGGCCTCCGCCTCGGCGCCG
GCCTCGGCGTAGACGGTGGTGGTGGTGCTGGGGAAGACGATGCTGTTGTAGGTCCTGCTG
TACTGGGTGCGCGGCCCGGTGGCCGTCCAGAGGCCGGCGATCACGCCGACCGCGAAGATC
ACGAGGAACATCACTGACCTGGCGAGGCAGGTGGAGGACTCCTTCCTCGCCAACATAACC
CTCAAGTCGTCGACGACCCCGCCCTTCATGTCCGAGCTCCGTTGTCGCCACCGAACGCAA
CAAAACGCAAGCGTACAACGCCACTACGCGGCAAGGCCAAAACCCCTCGACATGAACGAC
AGGGAGCTAGCTCTGCTGCTCGATCGATCGATCGGAGGACGGATTTAAACGAGAAGCTCG
GCGGATCGCTTGCGAGCCTCGGCTAGGGCTAGCATACGATGCGATGTGCCAGGACCAACC
GCGCACTCCAGTGTATTATCTCTCTGGCTCCTGATTCCCGGGAGCTGGCCTTCACGGGGA
AGCCATGAAGAGAGGCGGAGAGCCGGAGAAAGGTATATACAGCCACAGGTCCGTCGATCG
ATCGGTGTTTCCCAAGGTGGCGGGCGAAGAATCGGCAGAGATGCGGCCAAAAAGTGGGGA
GATCGAGGGAAGATATAGATATCGAGGGAACAAGAAGGGGGCGCGCGAGAGCGAGCAGGA
TATCCCGCGTTTGAACTACGTAGCGTGTGCAATTGGGAAGGCGGTTTATATACCGACCGT
GGAGATATAGGAGTCTTCTCGGTAATGTCAGCAGCCCTAGGTGTGTTCGATATGCCCGTC
CAGCTTGACGGGATATGTCAGGTTGTTTCGAGGACATATATACGCATAGGAATCCAAGGT
ACATACGTGCACAGCTCCGATCCGGATTATTGTTATATCAAAAAAGCAATCCCTTTTGGA
GTTATATACATGGAGGGCGTGCGTGCAGTTGCGCACCGCACGCGCGTTCTTGGGAGGACG
ACACCTTCTAAGACGATCAAGAACATATTCGGTTTGATAGAATTTGTGTCGAATATGTGT
AACTCGGACCAGAGATATAACCGCATCGCGCGTAGTTAAAATAGACTAGACCAATCTGGC
AAACTAAAACCCTTTTGCTGCCATAGTTCTGCAACACCGCCTTGCTAAGCCGCGCAACCG
GAAGGAGGTGGGGTACATCAGACACGGTCTAGATTAACCATCCCACACACGATAAACAAG
AAAGTGCACGTGTGCATTCCACACAATTTTCCTAGAGAAACATTTGCTTTTGTATTGTGT
AACACACGTGATGCATCCCAAGAAATCGTGTGAGATGTAACGAACATCCTACATAATTTT
CTTCAAGGAAACATTTGCATTAGTACTTTGCAATACACATGACTCGTCCCAAGAAATCGT
GCGAGACAGGATGATCCATCACAAATGCATTTTCTGGTGGAAACGTTTGTGGCATGTGTA
TAATATAAATGGTTGTCTAGGAGATCATTGTGTATGGTGCTTCATTGATTCCAAACTTTC
CTTTTGAAGCAATTGTGTGTGTTGCTTGTGGGTCATTGCCCATGGTACTTAATATGTAAC
CGTGTGCAAGACATCGGTCCAATTAGATGTGTTATTAGCCTATTATTATAAATTTCTGTT
ATAGCCAGATTCACATTTCATATCGAATAAATGTTCACCACGATTTCATGTCGAACATAC
AATATAATATATATTCATCTAACACATCAAGTTTTTAAAATTGACATCACCAAGTTCTTA
AAATTGACATCACCTTACGCCATGTAGCTAGTTCACTACACCACAACACAACATATACCT
AGTGATTCATACCACTGTACACTAGCACAAAATTTCAAATGTAACATCTAAAATAATTGG
AAAGTGGCATAACAGGTTGTAGATAGACTATATGAATCTTATCTGTTTTTTAAGCAGAAG
GCGGATATTAAGACTTGAACGGTGTTGAAGGTCCTCGCATTTTCAGGCCAGCGCCTATGG
AAGACTGTCTGTCCATCCTTCGCCCCCTTGAGGAAGACTTCAATATTGTACCATGGATTT
GTATCAATACCTTCCTTGTCTCTTGAGCATGAATATGATTTGAGAAGTAGTCATCAGTGA
ACTGCTCAGGAAAGGACTGAAAAAAGGTATGCATAAATATGTTTTCTAAATGTAAAATGG
TGTGCCTAAAAAAGGTAAGACGGATGAGTATCATCCTATAGTTGATTGATGTCTTCTTTA
TTACGCACACACGAGTTTGTTGTTTTTCCTCACTAGTTTGTTTATCCTAACAATCTTGAT
GAGCTTATTGATTTGACTAATATTCATTGAGATCTGATTTCCCCATATGTAGGTCCAATA
ATGGGTCTAAACCTGTGAAACCGGGACCTATATGCAGGACCAAATTATTAAAACCTAGTT
ATTAGAAGTTTCCTGCAATTGCACGATATTGTGCCATTGGTCAAATGACAATGTGCAAAC
CCCAATGGTAAATCTTAGTGTCTTGCATTGTCACCTTTCAATTACATAAGGTAGATATCC
ACCGGGTTAAATGAGAATTAACATACTAACAATGAGATAGGTTAATGAAGAATAAACACA
TTGCAGATTTAACATATTTGAACCATGGACAAGCAAACTAAAACATGCATGCTTAACACC
CAAAAAACAACAATTTTATTTGTTTCTTGTGTGTTCAGTACAACCAAATTTGATTTATTT
CTGACATATATACTTATAAACTTGTACCCCAACAATTGTGCATCACATTGAATCGAATAA
TTGAACCAAACAATGCAACTAAACACCACATTGCACAATTGAATAAAACAATGCAACTGA
ATATCACATTGCACAATAAAACATACTTGAAGATCAAATTGCATAATAACATTACATTGG
ATATGTGAGTACTCGCTCAACTACAAGTATTTAGACATAGAGGGAGTAGAATTTATGACC
AATAGTGGGCCGCCCAATAGGATTGCATGGGTTTGGGACCCACATTTTTTCTGCCATCTT
GTTCTCCTTTTAATTTATTTAATGTATAACTGAAGTATGTTAACTACATATATTCCATAA
ATTAATTAAGTAAATTTAATCAAATATTTATAAACAATCATGTACTATAAAAAAAATCTT
TGTGGACTTTCTGTAAAATATTTATATCAGTAAAAAAAAATGTTCGTGACATTTAAAAAA
AGTTCACTTGTTTCAAAAATAAGTTTTTGATATTTAAATAAATGTTTATATAATGTTAAA
AATATCTGTGTAATTTAACAAAAAATGTAACGCTAAAAAATGTTCAAGACATTTTTATTA
AATGTTCTCATAATTCTCAAAAATAATTTATGCCAGCAAAAGTGTTCATTGTGTATTTTT
TATATGTGTTGAGAAAAATGTGCAAAGCTTGTATCTATAAATGTACATCATGTATCTACA
CAAATACAAAAATGTGCAAAGCTTGTATCATAATTCTCACAATCGTCGATGCAAGTAATC
TTGGCCATCATACCAAGCAGCGGTGGAGCTTGGACCAAATTTTTGGAGGGGCAATGGGCT
AAGGAGGGGCAAATCTATAAGGTTTAGCCTGGTTTTACTGAACATACAGTACAAAAACTG
ATAGTAGTAGGTGAATTTTTCTTGGGCTTGGGGGGGGGGGGGCACCGCCCAGGTTGGCCC
CCATGAAGCTCCGACGATGATACCAAGCACTTCCGATGACCTCCGTTGTTCAAATGATGA
GCGCTCAACATGTTTAGCCTCCAATCAACATCATAACAAATATTTACATTAACACCGAGC
ACATAATTAATGTATCATTAATATCTTACATTTCCTATAAATACCCTACCTAACACATCA
ACATGCAATAAATACCCTTGCATTTTAAATCTCAATTAATACCACCTGATATTAGTGTGT
AACAAAAAAATGCTACGCGTGTATACGGAAAATGTACCACGTGTATACAAAAAAAGTAGG
CACTATTGGAGAAAATAAAAATAAATAAATAAGATAAACAAACCCCAAAGAAAAGTGTTA
AAACACAGAGAAGAAAATACACATGTAGATTCTTAAACCAATCTCGACCGGTCCATAGAA
CCTTTCCAAAACTGATGCATGGGCTATAATGTTGGGTCGGACCATTTGATAGAGCACTAG
AGGTGAGGCCAAGCTACATCTTGCATTTTTTAATGAAAGGGATGACCTCATCTCATTGTA
TTGAAAAATGAGGCACCAAAGCCACAACCCGTTCCCAGCACATTAGGCAAATCACTGCGG
AAAGTAGACAAAGCGGCATGCTAGCTATTACATACCATCAACATTTTAGGTGGAATGACC
TCTGAGGATCGATGGAGTCTTGTTGCTCGCTTCTCTTGCCTCCCAACCTCTTCATTTCCA
AGCGATCCTCATAAGCTCTCTTCTTTGCCGATCTAGCAACAGTAAACACCTCTCCAGCAA
CACCAACTGATTGTCCCCACATACAATTCTTCGTTGATGAATTCAGACATATACCCTTCC
TAGAAGAATCTAGGTACCTGGACACACTACGCCCTAAAAGCACATGTCATTACTCGTTTT
TCATAAGCTCCAAATCACAACAATACAGGAAATACTAACCACAAATTTTTTATTATCAAG
ACACCACAAAGAAGTTAAGTAAGACATTTTGTGAGGAATTCAAAAGTTAAAGATCTCTGC
AATAGTTGTCCAAACCTTCCTTGCCACAACACAATCAAAGAGTAACTCAAAACATATTCA
ACCTTTTCACATAAAAGGCAAGTCGCCTCATATCCCTCCTGCCATTTACTCAAATGATCT
CGAGTCAGAATTTTTTGTGGAAAGCCAACCAAACAAAAACCTGATATTTATGGGGTGCAA
AACTCTTCCATTTTTCCAAATTGGAGTACAAACCGCTCCCAATTAATCATGTTATAAAAG
GAGCAAATAGAGTAAAAACCATGAAGTTCAAGCATATAGATGGGTTGATCATCATTATCA
TTGTGAACATAGCTTGACAAAACACACAACAATTCCCACCCTTAAACTAGAAAACCAGCA
TCCGACCCACACATCTCCTAAAAGTAAGTCTAAGAGTGTGACTATCCTAAACTTTGGCCA
CACAACAAACTTGTTGTTGACAAATGTTTTTTTTACCAAACTTGAGTATTCAAGGTAGTT
TCCCCAGCCAAAGATATCAGGGTGATTTGACCATTTATGGTACCGACAAGGTCCCTTTGC
TACGGTTCTATGGGGACTATGCACGCACAAAGAGCATCACCGACAGCTACGTGCATGAGG
GTGTAGGCAGGTTCGGCCCGCTCGGAAGTGTAAAACCCTACGTCTTCTGTTTTGGTGGAT
TATGTGGATGATCGCAATACAGACGTGCTCGTCCGACAAGGATGATCGAGGGTAGCAGCT
ATACTGTGGACTGACCAGAGTGTCGACCCTTCTAAAGGTAGCCATGGACCTCCTTTTATA
GTCTAAGAGGTTACCAAAGTGGCTAAATTGGTCTTTTCGTGGGAGAATAGTCCACAAGCT
AACTCCCAAAGCTACTGACAGAAGCAACATTGGGAAATACCCAACTCTAACAGACAGAGA
CAACCGCATTAAATGGGTTGTGAGGTGGTGCACACGCAAAGTTCCCCGACAAGAATTGCC
TCTCCTTCTGTGACGTTGTAGGATCTGAAGTATGTCTAGNNNNNNNNNNNNNNNNNNTAC
TTGACCAAATAAAACCTTAGCCTTTTCCCAATTTTAGTTGTGGGAAAGTTTTAGTAATTG
TAGCAAGTCAAGCGCACCCTACACATAAAAGTCTAAGAGTATAGCGGCGGAAAGTAAAGA
CATGCACATGTAAATAGAGGGTAGGGATAGGAATATCAAATGCAAAGATTGATAGGGAGA
TTTTTGGAGTGGTTCCGATAGGTGGTGCTATGGTACGCCCATGTTGATGGAGACTTCAAC
CCATGGATGGTAATGGCTGCACGAGTCCACGGAGTGCTCAACCCATGAAGGTTCCACGGA
GAAGCAA