Contig Data
morexGenes
Links



Map Locations of contig_44695 (3568 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_44695

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60716 2 1785 bp MLOC_60716.2 Available Available LOC_Os04g33390.1, FRAME:+2, EVALUE:0.0, 13104.m03216 protein prephenate dehydratase domain containing protein, expressed





CDS Structure of MLOC_60716






Contig Sequence (3568 bp)

>contig_44695 3568 assembly3_WGSMorex_rbca.fasta
TGTTACTCTAACCCTCTCTTTCTTCTTTAATTGTGTGCCACATCAGCATGTTTGCTATTC
CCAAGTACATGATACTACCTAAGTTACTCCCACTATGGCCAGCCTTAAACTTGATCCTAT
TAATTACTCTCGTGTGGGGTTTGGTTGCATGTTATAAATTTAAATTCATGGGTTAGCCAA
ACCGTGCCAGCTATTATTGTTTGGTTTATTGTAATGTTTTGTAAAGAGAGACTTGGATGG
TGATTGGCTTTCTTTATGATTTGAATTATTTACTTAGCCCAATCTTTTTGTGCCTAGATT
GCAGTGCTCCTTCTTAGGTGCCCAACACATGTGTAAGGAGGGAGTATGCCACATGCATGC
AAGGAAAAAAAAGAGAAGAAAGAAGCTAAGTGTCATTACGACAATATGTATGCAAGTATT
AAATAAGTTGCTACTCCGAGGAAATACCATTATTTTTTGCCTTGACTATTGTTAGTGGTC
TTATATAGATGCAAAATATATTTTTTATAGTGGCCTTGTATATGAGAATGAGGGGAGTAA
TATTTCCTTGCCTTCCCATTTTTCTTTAAATGAAATATTTTATTTCTATTGACTTTTTGT
GATTTGTTGAAAGAGAATTTAAAGAACAAGTGCAACTCAATCATCGAATAACCCTCATCC
AATTCTCATTTGAGTGCATGGACTAAATAATACTCCCAATTATCTCTTTGTGTACTCCAA
CCCAGTCTCTAAGTTTCCCTCTCCACTAGTTTTGACACAATATCTACACAATATAATTTG
ATACAAATCAGTAATTTACATAATCAAATATACGCACACAATGCTCACCTCAATCTCTCT
GGATCTTTGTATCTGTATGTTTCGCTCATGCACTCTGTTTTTTTCATCGACTATTGTTAT
ATCTACCATCACGCCGACGTCTCTGATCTCCCCCGCACCACCATTTTCCTCAACCTCCTC
GTCGTCCTCCAATCCTTCTCGTGCCACCATCTTCTTCAACCTCCTCGCTGCAGTCCCACC
CCTCCTTTCTAGATCGGGCATGGCTCGGGGTAGAAGAATAGGTGGCGACGAGGAGGACAA
GGTTGTTGGACTTGCTCTAACAATTTTCTTCGGTTTTTCATTTTGCGTGTAAAGTGTGTG
AGATTGGTGCCACGTCGTTGTGATACCATTTTGACTAAATCAATTCGGTACCTGATGTAA
GGCTGGAATCAAGCTGCAATTGTTGAATTAAGAGGTCGAGTGATATTAACATAAGTGGTC
AAACCTAAACTCGGTCTATAACAAAAAGAATTAACATCGCCCATGTGCTACAATTGAACA
ACTTGTGATCCTTCATTCTCTAAGACTAAAACACACAACGCCTCCAAAATTATATTTTCC
GAAACAGAAACGCCAAACTGGTTTGAAGCTCAGTGTGGTTTACAGGTATATTCAAGTCAG
AACACTACATGATTCTACACCGGAGCAAACGTATGCACAAACGCGGGGATCATCGACCAA
AACGTGGGGTATGCCTGAATTATAAATGGTTTATCCTTTTTCCTGGAAGCAGGGCACATG
CATTGGCACGGGGTGCAAGTGGATTGAATCACCGGAATAACACAGACGTTGTCACGGCTC
ACGCGAGGGCCATCAGCCCATGAGTCGGTTGATGAATCATTGGAATAAACAAAGGACCAG
AGACCCAGACTAAGACAAAGCGCCGCCTGCCTATATTATGCCCTTCCATAACCCATTCCC
CTCTCAGCTTCTCGCTTTTGAAGCTGCTCCAGCAACCAGTTTCAGTTTTCTCGTTAGTTA
CCAGCAAATAGCAACAGAGGAGGAAGAGCTAATTGGCATGGCTGTCGTGAATATTGTCAA
GCCGCCCATTGGGCAGAGTCCGAATCTACAGGGGCGTGCTCCGAGGAGGGGCAGTGTCGT
GGTGAGGAGCTCGCTGCAGGGCGCCGTCGTCGGGAACAGGACGGAGTGGCTGACCAGCTG
TGCGGTGCTCTCCAGCAAGGTGGCCGCGCTCGCCCCCCACTCCACCAACGGCCACCTCGC
GCTGGCGGCGGCGGCGGCTTCGAACGGCGCGGTGCTGGATTTGGACCCTGTGAAGACTAT
TAATGGCAGCGCACGCAACCTGCCGGCGCCCCTGCGGATCGCGGACCTGTCCCCGGCGCC
CATGCACGGCTCGGAGCTGCGCGTGGCCTACCAGGGCATGCCTGGCGCGTACAGCGAGAA
GGCGTCCGTAAAGGCGTACCCGGGCTCCGACGCCATCCCGTGCGACCAGTTCGAGGTGGC
GTTCCAGGCCGTCGAGAACTGGATCGCAGACCGCGCCGTGCTCCCGGTGGAGAACTCGCT
GGGAGGAAGCATCCACCGCAACTACGACCTCCTGCTCCGGCACCGCCTGCATATCGTCGG
CGAGGTGCAGCTCCCCGTGCACCACTGCCTCCTCGCGCTCCCGGGCGTGCGCAAGGAGGA
CGTCACCCGCGTCATCAGCCACCCGCAGGCGCTGGCGCAGTGCGAGCACACGCTCACCCG
CATGGCCGGTCTCAACGCTGCCCGCGAGGCCTTCGACGACACGGCCGGCGCCGCCGAGTA
CGTGGCCGCCAACGGCCTCCGCGACACGGCCGCCATCGCGTCCTCCCGCGCCGCCGAGCT
GTACGGCATGGAGGTGCTCGCCGACGGCATCCAGGACGACTCCGGCAACGTCACGCGGTT
CGTGATGCTAGCCAGGGAGCCCATCGTGCCGCGCATGGACCTCCCCTTCAAGACGAGCAT
CGTGTTCGCGCACGACAAGGAGGGCACCTCCGTGCTCTTCAAGGTGCTATCCGCCTTCGC
CTTCCGTGACATCAGCCTCACCAAGATCGACAGCCGGCCTCACCGGCCCATCCGCCTTGC
CGCCGACGATGCCGGCAGCGGCACCGCCCCGAAGCAGTTCGAGTACATGTTCTACGTGGA
CTTCCAGGCCTCCCTCGCCGACCCGCGCGTGCAGAATGCACTTGCTGAGGTGCAGGAGTT
CACGTCATTCTTGCGCGTGCTCGGGAGCTACCCCATGGACATGACACCTATGGCTGCCGG
CGTTGCCTCATCCGATTCATCGTCGGCTTATTCGTCTTCTTGATTGGATTCGATCGAGTT
AATTTAATCGCCATCGAGTAATTAATCGCGTTCTTCATTTTTCTTGTCGTGTCACAGTAC
GTGTAATAGTGCCAGTTGAGCTGATTAGACCTTAGGGCGATGCTCTGCGCGGGCGCGCCG
GCCGCGCGCAGGCCGCCCGATTTGCCAGCTGTAGATGGGCGTGTTGTTAGATTTTCATGC
AATATATTTTTTTAATGCAACAAATTTCGATGATTATGTAGCAATTTTTGTTAACGATTG
CAACAATAAAAATAATTGTATCAAAAAAAATATCTACGTGATCGTAGCAAAATCGAAGAA
GATGATGCGTCATAGCAAAAGTCAAACGCCAGTTGGTAGCAAAAATCTACGTGACGTGTA
TACAACTTTTTTAATGAACGGTTGCAGCAAAAAATGATGCCGGTTGTAGCAAAAAATAAC
ATAGTTATAGCAAAAGTCAAAACGCCGG