morexGenes - Barley RNA-seq Database

Contig contig_44691
Source Contig contig_44691
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44691 (6490 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_44691

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60707	1	1432 bp	MLOC_60707.1	Available	Available	LOC_Os02g03060.3, FRAME:+2, EVALUE:0.0, 13102.m00279 protein cyclin-dependent kinase A-2, putative, expressed
CDS Structure of MLOC_60707

Contig Sequence (6490 bp)

>contig_44691 6490 assembly3_WGSMorex_rbca.fasta
CAATGAGCGAGCGAGACACGTGTAAATCCAGCTTCGTATGACCTTCGTGTAGCGTACATT
ATACAAAGTTAGGCGTGCGCCATGGACCAGGTGAGCCCGCGCGGCCCGTCCGATCGCCGC
GCCGCCCGCTCTCACCCCCTCTCTCCGCCCGTAATGTCGGCATGTGTGTGTGTTGGGCGC
AGTACGAGAAGGTGGAGAAGATCGGGGAGGGAACGTACGGGGTGGTGTACAAGGCCAAGG
ACCGCTACACCAACGAGACGATCGCCCTCAAGAAGATCCGGCTGGAGCAGGAGGACGAGG
GCGTCCCCTCCACCGCCATCCGCGAGATCTCCCTCCTCAAGGAGATGCAGCACCGTAACA
TCGTCAGGTAACCCCTCCCCCGTCCCGTCTCTCCTCTCCGGCGGCAGGGTCTGGGCTGGA
TTCGGCCGCCGCCGCCGCCGCCGCGGAACGGATCATGGATCATGGATGGACCGGCTGGCT
GGCTGACTGCTGCTGCCGTGCAGGCTGCAGGACGTGGTGCACAACGAGAAGTGCATATAC
CTCGTCTTCGAGTACCTCGACCTCGACCTCAAGAAGCACATGGACTCCTCCCCGGACTTC
AAGAACCACCACATAGTCAAGGTCACAGCCGCCACCCCCCCTTTGATTTCGTTTACTACT
TAGATTGCCGACTGTCGGTTACTGCTTACTGACAGTAGCTCTATTTGGCTGCGATCGCGT
GGAAACGTGAAATGTGATGCTGTTTTTGTGCTCTGCCTGCAGTCCTTCCTCTACCAGATC
CTGCGCGGCATCGCCTACTGCCACTCGCACCGCGTGCTTCACAGGGATCTCAAGCCCCAG
AACCTGCTCATAGATCGCCGCACCAATTCGTTGAAGCTTGCTGACTTCGGATTGGCCAGG
GCGTTCGGCATTCCTGTCAGGACATTCACTCATGAGGTACTTTTTGTGTTTTGCAGCCCG
ACGTTTCGTCGGTCTACTACATTCTGATTTATGGCGCATTTGCATTGGAGATGACAGTTG
GAAAATTGTCCTGCCATGCTTTTATCAGGGGCACAATGCACTTAATTTTAAGCAGTTCCA
CTGGTACCTAGCAACCCCTTCTTCTTCATTTCAAGTCTGGAATGCATTTTGTACTTGAAA
TCAGTAGACCACATGTGCACATTTTTGCTGGTGTACTACTATCTGTCCTATTTGACTATC
GGAGAGTGCATGTCTTCATCGAAAGAGATAACCATATACTATTGTTGCAAACTGAGGTTG
GTGTCCTATTAGTGTTCACTGTTGTTTTGTACATCTTGAGACTGTTCGGCTATCTCCTTC
CTCTTTAGCCTTTACCAAGTGTTTCCATAATCAACGGTAGATGATTTTGCTAGTCTCTTG
TCGTAGTGTTACCTTGCCAATTTGTCTTTACTCTCCTGTAGGATGGATCACGTAACAAAA
AGGCAAGAGAAACTAGGAATGTTATAGAACAATTGCTACATTTCCTGAACATACTATGGT
TGTTACTATGGGCAAAAGAGAAGGAAATGTGAAGCTTCTGTTGTAGGAAAAAAATATATT
CAAACTGTAGGCAAGCATAGCAAGCCTAATTTAGTTGGAGCTGGTATTCATATGATGATA
ATATTAACGAGCTGTTCTCATGTTACAACTTAGATCCTGCCCTTTTGCATTTGTTTTGAT
TTTTAATCTAAACAGAATGTTGTTTATAGGTGGTAACATTATGGTACAGAGCGCCAGAAA
TTCTTCTGGGTGCAAGGCAATATTCTACCCCTGTTGATGTGTGGTCGGTTGGTTGCATTT
TTGCTGAAATGGTGAATCAGAAACCTTTATTTCCTGGTGATTCTGAGATTGATGAACTCT
TCAAGATTTTCAGGTCTTTATCTTATCAACTTTGGTTGGTCTTGCTTTAAGCTCTTTCAT
GCATGTGAAGAAACAGCTAATCTTGGTTGCCAAATATTCTCTTTCATGCAGAATTATGGG
CACTCCTAATGAAGAAACCTGGCCAGGTGTTTCTTCGTTACCTGACTACAAATCAGCTTT
CCCCAAGTGGCCGTCCGTGGTAAGACATAAATGTTCTCTCATTGTTCTTGTGAAAAGGGG
TTAAAATATGAAGTTGCCGTTAGGGGTCAGACCTTTTAGTTTCTCCTTGCTATGGAATTA
CTTGTGCACTGTTATTGTGCAAGTGTGTGGTGATTATACAACATTATACTGATTGTTACT
ATGGGATTTTGGTTCTAACCTGAGGGAGTTTGCTGCAGGATCTCGCAACTGTGGTTCCAA
CACTCGAACCTTTGGGACTTGATCTTCTCTCTGTAAGTTTCACAATCAAATGTTATTTGT
TTCCATAATGTGTCATGGACTGTGCATTTGTGCTTATTATCTTGCTATTCGCATTCACTT
TGGTTAGTGTGTGGATACATGGTGCTTCCTTTGTGAGGGGTTTGCAGTGCCTTGTTTTTA
TTGCATTTTCAATAATCTAAGCTGAACAATGTAAATTCCGCCTCTATTGCTGTGATCTTG
TCTGTGCTTATTTGTATCCCTGTTGTCGCAGTCGTGAGACTATGTAGCAGCATTCTAAGT
TGTACTTCTCACATGAATTCGGACAGACATGCCCAAAAAATAATAATCTTAGTCTAGTAC
AAACTGAAGTTGCCATGTTAAAAAGACATTTATAGATTGTAGGTGCATACGCTACCAGAA
TGTCACTTTGGATGCACATTGCTAATTTATCTAGGATGCTAAGCATTGGAACCCTTCTGA
GTAGATATTGCAGTCGGTCCATTCCCATCATGGCTCTTGCATGATCTGTATTGCTGCATA
TGCAGTCATGAATTATGTACATCTGTGCTTCCTTTGATGTGATTATGTCACGAGCATATT
TACCACATAACACCATTGATGATACATGTTCCTTATGATGGATTTATTTCGTTTATACCT
TTCTGTTCTCTGGCATGAGTATATGATTTCTACCCATGTGCATTCATAACCTTGCTTTGC
TGACTTCTCTCCTCGCCCTCATGCAGAAAATGCTCTGCTTAGATCCAAGCAGAAGAATCA
ACGCCCGAACCGCCCTCGAGCATGAGTACTTCAAGGATCTGGACGTGTCCTTGTAGATCG
CGTCCCCTGCTCCACTGTAAATTAAGATCGCGTCGGTTGCTCGAGAGCTTCCTGAATCCT
CCCGGACTGTGTGCTTCATTCTCTCCTATTCTTTCTGACTCTGGCTGTGTGTAGAGAGAA
ATGAGAACGGACGGTGCCGCCTGGTTCACCCTTCTGTGTAGCCCAGGCCAATTGAGAAAC
ATCCTGGTGTTTCGGGAGCTCCGCATTGCGATTTCGCCCGTATTCATATGGACACCGACG
CCGGCACCAGACTTGTGCATGTACGATAAATTTTGTAGTAGTAGCAGATTGTCAAGGGGC
TGCAGTGTTTCATGAACTACCAACTGATGTGGCAATGTTTGGTAGTGTACTACTACTTGT
ACTTGGTAAACATCATTATCATCATGAATAGAATCAGTTCTGGTAGGGTCGATTCATTTG
AGAACAAATACAAATGTGAGACCATGGGCGCTTCTTAAGTCGTGTTTGCATATTAACCTA
GTTTTAAAGAGTAGGCCATGACATTCTTTTGGTGCTAAATTGACGTTATAGGGCACTAAA
TGGTGACGTAGCGGTTTACATGACGCTAAGTTGTACACGATGCATTTAGTGCGAGGCCCC
TCCAAACGCTAGAACAGTGACATAGCGTGCTATTCACAAAAATAAGATGTCCTTTTTTTG
CGAGGTAAAATATAAGATGCCCTAACTTTAATCTGAATCAGATGTATATATACATGTTTT
AGTTTTTTTTACTTATTTCAGTCAGTATGTAGCCTATATTAAAATGTCAAAAACATCTTA
TATTTATAACCGAAGGGCGAATGATCTTAGCACCTCAACCTCAATGGTTTTGAAGATGAA
GGAGAACACTCACCTTGTCTTCACCATCGTCGGAGAGGACAATGGGCTTTGTGTCAATCG
TTACAACCTCCAAGGCGTTGTTGAAGTAAGCACCTAAACTACTCGGAATGTGAAGCTATC
TCGTGATAGCACTCATACACCGTGATAATATTAGCGATGTGGGATACCCTAGAAGAAGAG
AATGCCGCACGCAAAGCCGTGCAACGGGCCCATGGCCAAAAAATTGTAGTGCACGACGCG
CTCATACCCGATCGGCACCGGGATGACCTCGTTTCCCTTCAGCCTCCATGGCAACACTCC
TTGCGACAACAATAACTTCTCGGCCACGAGGGCCTCCAGGTTGTGGCCACGACTGGAGGA
GGGGAACCATTTCAGAAGCGCCTTGCTCAACTTCTGCATTGGCCTTCTTCTTGTGCTTGT
TGGCGGCGGTGGCCTCGGGCCCGCTCCGGCCACGACTCCGTCCGTGACTTGTCTTGCCCT
TTGCCATTACTCCAAACTTGAGAAATGGAGGAAGGGAAGGGGGCCCAGTCAGCCAGAGCG
CACATTAAGGCTTCGCTTGGATTGTCGTTTGAACCGTCAATACCTTCGTAAATATTTTAC
ACACCTATAGGCGTCGTTTCTTTTCCAGACCGAATTCAAGCTACGGCCGGTATTATACAC
ACGTAAACTAAATCCGGATGTAAAGTATTACACCGATTCCAAGCAAGCCCTAACGGTGTT
ATGGGGAGAGAGACAAGACGAACATGGAAGCGAGACTAGTTGTCCACTAGGATTATGCAA
TCAATGTATACATACACACGTATAGTTTTTCACACGTTCGCGATAGGCTTACTACATACT
CCCTTCATTGCAAAATACTTACCGTTTGAACTAAAACTACGACAAGTATTTTGAAACGAA
GAAAGTAGGGGTGTATTATTACACGTGATGTCATTTTAAGCTGTTTCCAATCGATTTATT
TTTGTATTCTTTTGATGTGCTCGAACATGCGTGTTAATATGTGTAGGAATGCTCATGCAC
CTGGCTGGTGCATATATTTTTTAAAATCTTGGTTGATCAAATATCACATCATTTTAACCT
AAATACATATGGCATAATTACATTTTCTTCTCTTCTACTCCGTATTATCTATTCATATTA
TAAAGGATATGTAACGTACTGATAACAAACTGAAAAAAGCTTAAGCAAATTTTATTTGTA
GAACATGCCATGTACAAAATTGTAAGCAATGCACCACAAAAATCTCTACATCTCTTATTC
AATCTAAGGCTACGACCGAGTTAGGCTTAGTTTTTTTTTGAGCGAAACCGGTGTTCTTTA
TTGATTGGACAACATGTTTATAGAAACTACAACCGGATCATGAGGAAACTCTAACCAAAG
GTGCCTCCCTTGAAGGAGTGACACACCGAACCTAGCAAGTCTATGAGCATCAACATTAGC
TGTTCAAGGTTCAATTTTTTTACAAGACTCAAGTACTTGACAGTTTACTAAGATCTCCTT
TATTATGCCTCCATTTTTTCCTCCTTCCCCATTAAGTATATGCTTAACAAACTGCTGGCA
ATCTGAAGCCACCTGAACTCTTTGCATCCCGAGACCTTGAGCTAGTGCAATAGCTTCTCT
ACACGCTACAACTTCAAGAACTGTCAGATCGACTAATCCTTGTATAGTGAGCACTGAGGA
GCCAAGAAACGTCCCCTCCTAGCTCCGACAGACTACCATTGCCGCCCCCATATTGTGGTG
TGCTGACACTCCTACATCCATATTAATTTTCACATGCCCTCCTGTTGGTGCAAGCCATCT
CCTCAGAACTGTTCTTTCTCCCCGATTTGTTATTGCATGGCATTTTGTATCCTTGTCCAA
TTGGTCAAGTTCTGACAGAAATCTCTGGACGAAAGCCTGTGTTTCATAAGGACTTTGAGT
AATATCCTCATGGATCAGTTGCCTCCTCGCATACCAAACTGCCCACGTTGTGACAACCAT
TCGAATAAAATCTTCATGTTTTAGCACTTCCATCATGACAAACAACCATGTCTTGGCAGA
CCTCTCTGTTGTTTCTACCATGTGTTCCAGCAGCTCCGGATCGACTAGTGACCATACACA
TCGCGCCATTGTACATTCGAGGAGGCTATGGCGCCAAGAGTCCTGAGCACCACACACCCC
ACATACATCTCTCGCTGACATATTCCTATTCTTCCTAACATCTTCTGTTGGGATAGAATT
CTTGGCTAGCCTCCAAAGGAACAACTTGATTTTAGCAGGTACCATAACCTTCCAAAGGGA
GACCCAAGCTTTTCTCATGCTGGACACATCAGACGCCTCGGGTGGCCCTTCTAACCAGTC
TTCCCTCCTCTTTTTTATTTCAACAATCATCTTATATGCTGACCTGACCGAGAATATTCC
ATTATTTTCAAAACTGTCGGGGATATACCCCGCGATGTAACCCAGCTTAAAGTATGACCC
AACTGGGACTTGGAGACTCACTGGCGACTTATCAATGACCTGTCGGGCGGCTCATACATG
ACCCGACAGG