morexGenes - Barley RNA-seq Database

Contig contig_44688
Source Contig contig_44688
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44688 (10718 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_44688

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60703	1	633 bp	None	Available	Available	None
MLOC_60704	1	890 bp	None	Available	Available	None
MLOC_60702	5	1110 bp	MLOC_60702.4	Available	Available	LOC_Os01g42190.1, FRAME:+3, EVALUE:3e-68, 13101.m04332 protein heat shock protein DnaJ, putative, expressed
MLOC_60705	2	2946 bp	MLOC_60705.1	Available	Available	LOC_Os01g42210.1, FRAME:-3, EVALUE:2e-18, 13101.m04334 protein LTPL47 - Protease inhibitor/seed storage/LTP family protein precursor, putative
CDS Structure of MLOC_60703

CDS Structure of MLOC_60704

CDS Structure of MLOC_60702

CDS Structure of MLOC_60705

Contig Sequence (10718 bp)

>contig_44688 10718 assembly3_WGSMorex_rbca.fasta
ACAACGCACCTCTCTCACTGAAGAAAGATAAATCTACTTGGCCAAAGCAAATCAATATAT
CAAAGAGATTTACGAAGCTGTGATGATCATGCACATAAGAATCATATTTAGAATCCAGAG
AAGACTCGGATATTATTATCATGAATAATCTGATCATAAACCAACAATTGACCGGATCCC
AATAAACGCACCACACAAAAGAGTTACATCGGATAGATTAAAGAGAGTATGTCATAGTCA
TTGTATTTAAGATCAAGAGAGGGACATAGCCATCTAGGTACTAACTACNNNNNNNNNNNN
NNNNNNNNNNNTACTCACACATCACTATGGGAGCAGCGAGGATGATGTAGAGGTCCTCCG
TGATCGGAAAATGGTTCCAGATGGGCACACGACGGAACAAAGACTTGCGGTGGAGAAAAA
AGTGTTTCGAGAGGCTCTCTATAGTTTTGGGATATTTTTGAATTTATAGGACGAAGAGGT
ACGCCAAGAAGAAACCGAGGGGAGCACGAGGAAACAGGGCGCGCCCTACCTCCCTGGTCG
TGCCCTATTGTGTGGTGCTTCTCTTGTGAGGCTTCTCGCCTCCTCCGAAGCTTCTAGTCT
TCTTTTTGTCCATAAAAGATCATTAAAAAGTTTCATGGCAAATTGACTTCGTTTGGTACT
ATAAACCTGAAAAGCCAAAAACACGCAGAAAACACGTACTGGCATTGGACACTGGGCCAA
TAGGTTATTGCTCAAAAATAATAATAGTTGGTGTATAAACTCCCAGAAGGTATCCTAGAA
TAATAATATAATAGCACGGAACAATAAAAATATATAGAAACATCGAAGACGCGAAACATG
ATATGCAAGTCTTCCTTAAACAAAATTATCGAGAAAAGCACACTTGGTGTGATGTTATGG
AAAATCAAAACTTTTTCACTCCATCCAAAATGCTCCAACTGCCCTTCAACAAGATATCCA
ATGCAATTTCATGGAGGATTGTGGACAAAGCCAACACGATATCATGGATAACTCAGGTGC
TTCGTCTACTAAGTATGAAATGAAAGTGGTCTCTTCCTACACATTTTTTTTTAAATGAAA
GTGGTTTCTCCCCGCCCCACTTTTATTAAAATGAGGCATAAAGCCGAAACCGTATTCGAA
ACAAAGCATAACATAGTATTTTTCTATCCAGCCACGATAACTCCCGCACCGGCCAACTAG
AAGGATAAGCAACAAATCACCAAGAGCAGAAGTTCTTTCAAACATCAGGTCCAAGTCTAA
TTCGAAGGTATTTATTACATACTCAAGAAATAAAAACCATCACCCAGCATTGGATTTAAC
TTGCAAGTCAGGATTCGAGGGGAGTAGACGTCTTATTGGGTCCTCCAAGTCATCTCGAGG
CGATCCGCAGAACTTCCTCGCGCATTTTGTCCAACAAACAAATGCAACACAACAACATCA
GCGCATGTGCTTCGACGCAAAGCACTTTCTATTGATGTAGATGGGAAACTTAATTTGGCA
AGGACGCAATTCACATTTCTCCATTTACACCCCTGAAAACAAAAAACGTTGTATAGAATC
ATTTTCATTACAGAATAAGCAAGGGAGGTGAGCCAGAAGAATTTTCATTGAATCAGGTTT
CTGATATTTAGCCTGTCACGAAGAAGTAACCAGAAGAAATTATCGTGTTGGCATGACAGC
AGTCGAGTTTGCACAAAGCGTTGAGCTGTCCAGCTAAAAAAACAAAGTTGGAGAGATACA
CCTGCGTACGCTGGGGTCCCACCAGATCAAAATCAGGCCGGACATAGGCCGGTATGTGTA
AGTGGGCCCACCGTCCCCAGCAGCCACAGAAACTTGCGGCACCAGAAAATATCTCGGCCC
CGCCCGCAAGCGAAGCGAGGAAGCATGAGGTGGCGACGGTGGTCGGCCGCTCCAGAACTT
TCACGACGCCAGATATTTTTTGCCGCGCCCAAGCCCAACCTGGCTTCAAACTCCTCCCCC
TTCGCAATGCTTCGCCTATCATCTCCTCCTTTCCTCTCCTACCACCTCCGCGCGCGCCAC
CGCAGATATTTTCCTTTTTCCCGCACCAAGCCCAGCGCCTTTATATACGCCGCGCGCCCA
TCCATTCCGACGCCTCGCTGTCTCTCCCCATCTCGTCTCAGGTCGCCATCGAAGCACAAG
CACCGGTAGCACTAGCAGGAACCCCCTAACGCCCCAGCGTGAGATCGCGAGATTGTAGCT
TGATCGATCGAGGCAGGGAAGATCGGAAGAGGATCGACGATGCAGTCGCCGTCGCACTAC
CAGTCCTCCTACTACGCCGTGCTCGGCGTCCACCCAGGCGCGTCCGCCGCCGAGATACGC
GCCGCTTACCACCGCCTCGCCATGGTGAGCAGATTAATTAGCAATCTCTTTCACTGGTGC
TTCGCTCGAGAATCCTCTGGGTTCTGCCGGCTTGAGGGGGGAGAAGCAGAATTTGACGTT
TATCTTCTCATTCGTAATGGCGCAGAGGTGGCACCCGGATAAGATCGCGAATGGCCGTGT
GGATCCGGCGATCGCGGAGGAAGCCAAGGGAAGGTTCCAGAAGATACACGAGGCATACCA
GGGTACTTGCGCTGGCGCCCAATTCTATTCTCTCTATGTACGGAGTATGTTTCGTTCATT
TCATAGGTTAACGTTTGAAATGTCGGTCTCGTGCAGTGTTGTCGGATGAGAAGCGGAGGG
CGCTCTACGACGCCGGGATGTACGACCCCCTCGACGACGACCAACAAGAGGTCGAGGTAA
TTGATTGAGTTTGCCTCTCTACATGAGTTACTCGTGCTCCTGTATATAAATAATTGACCA
TGGGCGTTGATCTAACTCGGAGTCTCCGGTGTTGTGTTGTCAGGGCTTCCATGATTTCCT
TCAGGAGATGCTCTCGCTCATGGCGACCGTTGGTACAGAGGTATTGACGAATTCCTCAAT
ATAAGGCTTTTTAGAGATTACACTATGAACTTCATATGTCTGTATATAGACACATTTTAG
AGTTTAGGTTCACTCATTTCGTATATAGTCCCAAGTAAAAATCTCTAAAAGGTCTTAAAT
TTAAAAACAGGGGAGGGGAGTAGTATTGACGAATAATTAAGTAAGGTTCATGCATGCCAC
AATTTGATTCGGTGCTTGTAGTGTTTAGAATTTGAACCCAACTCGGGCACCTACTTTCAG
TTTGGTATGTTTGAACTGTAAACCGGTTCTCTTTCTCTTTTTGACTGAAGAAAAACTTTG
GGGGATATGATGTCACGGGAACTATGGGAACAAGAAACAAAAAATTTAGGATTCTAGAAC
AACCATGACGATCGTGAAGAATCTACAACAAGCATGTCACATTTTCGTAAGAAAATTGGG
TTTCATGCCACCGCCAGCAATTTTCGTAAATCCATGTAGACCAAACCGAATGTGTTGAGA
AACTGGTAGTACGGTGGTACTGCATGCCTGAAACTAACACTGACACCCCCGCTTGACTTG
GTGCAGGAGCCCGTGTATTCCCTGGGCGAACTCCAATCGATGCTTGACGGGATGATGCAG
GATTTCACCTCCCCCCAACCGCCACCACCAAGCAGCTTCTTCACCAGCACCAGTTCATCG
ACGCGGTTCGGCGCACCCAGTGGCGGAGCGCAGCAGCAGCGTCGATCCTCCTCCCGCGTA
CGGCCTCAGGGGTTCGGCGGCTCGGCATGCTTCAGCCAGACGGCTTTCTCCGGCTGCTAA
GCACTTGCGCGATCTGCATCGCAGTTCATACGTCCGTGGGTGTATACATATCCTAGTTAC
AAGGATCTCACCCGCGTGAAGGCACCGAAATATGCAGAGACCGGGGACCGTGGAGCTAGC
GCTCCAACGATGCACACATCACCCACTCACTGGATCAGGGAAATAAAGGAGATGGTAGCT
AGATATTTCCAGTTGAGCAGCAACTCGGAACGATCTTCATTGTTAGTTTTTGTTTAGATA
GTTGTACATAGATGATGACAATCAGAAGTGAAGACGTGATGTTTTTGCACTGTGGTGTAT
TTACTTCAAAAGCAACAACAATGACACGTGCCGGCACAAAAAAAAAATCAGTGAAGAGCA
CGTGTTTTTCATCTAGAACCTGCTTGTTCTCTGGGTCTGTCAAGCCGAATGAAGCGTGTA
CGTAACTAACATTGGCAACTTACAACGATAAACGAATAGATCAACTTTTCCATCAGAAAG
AAATCGCACTAATATTTGATTCGGTTGGGCGCCATTGCAGAAACAGAGCGTGTATAACAC
ATAAACCCCAGAAATTAGCAGTAGTTGCACCAGCATACCAATACCTGTTTAGGATATGCA
CCAGCAACTAAGACTTGGTTATCCAGTTCATATATAAGGCGATGTTGGATTCACGGTCTA
CCGACTACTAGCTGAGATCTGCCTGTTAGCAATCAAATCCAAATGCTGCCCCTCCAGATG
ATAATAGTCCTGGTATCCATGTCTTTGGTTGTGTCCCCTTCCATGGGCATAGCAACGGAC
GACAAGTGCAAGTGCCTCATGTGCGTCTGCGACCTGGATCCGCACCCGCTGCCGCCGGCA
ATGCCGTCGCACCACCCAGCGCCTCCTCAGCACGAGTACAAGTACCCGCCACCGTCAGAG
CCGGAGCCTGAGCCAGAGCCGGAGCCACGGCCGGAGCCACAGCCGGAACCGGAGCCACGG
CCGGAGCCACAGCCGGAGCCAGCGACACAGCACTGCCCGCCTCCGCCGGAGGCTGTGCCG
ACGCCGGCGTACTACTACCCACCGCCGTCGGAGCCGGAACCAACGCCCGTGTACTACCTT
CCACCGCCGGCTGAGCCGTACGTGTACCCGTACGTGCAGCCGGCGCCGGTGTTTGGCATA
GTGGGCACGCCGGGGCAGATGTACCCGCGCGACAGCATGTTCTACCCGTCCAGCGCCCAC
CGGAAGCTGTGTCGTGGGATATCTTCTGCAATCCTCGCCTCCTCGATTGTGGCAGCAGGG
CTACTGTCAATGCTCGTGTAGCTTTCGTACAAACCATTCTGTCCACAGACTGAACCTGAT
CAGCAACCAATTGGCATGTAATGCTTCATTCCGCTGACGATGCTAACCCTGTTTATTTTT
CATTTTGTTTGCTTCATTTCAAATGTGTAACACTGAATTTTGTTCATGCGTGTGGTGCAA
TTAAGCATATTTGTATGGTGAAAATAAAATTCCAGTGATCCCAAGAAAACGGCATGCAGA
TTCATAGAAGGACAATTGCAAGAGAAACTAAACTGCATTGTATAAATCTGTACCATGTTT
GGAACGATACGAGTATGCCACAAGGATAACAGTTACTTGCGTTGTCAGGTCATCAAAACG
CGCACAGAACAAACTGCACTTGTCAGGAAGAGTTTTCAAGTATCAATATCATGCCCTGCA
TCACGTGGTACCTCACCGTATGCAACAAGAGGATCCAATCAAGAACGACGCAGCAACGCA
CAAGTATTGTATCAAGAGCGAGGGCAAAGACCTTTCAAGAGCGAGGTCCGTCCAACATCC
ATCAGAAGTTCAGCGTGATCAAGACTGCTGCTCCCAAGACCAAGGCCACAAGGAAAACCC
GGCATGCACACACGGCATCGGATCCCGACCGATCACCCGGCGCAGGCGTCGAGCTCGAAT
GCTCCTCCATTTTCGGAGCCGGGAACGCTGGTTCTGGAACGGCAGCTGCAAGGGCATACA
CAGCAGTTTAACTAGTGCGCACCAAGTACGACCGATGATTCAAGAAAGACATTCAGGACT
TGCGGTGTTCAGACGACCAAAATGGCATGCTCAGGTGAACAAACTAGAACGTGCAGCTGC
AAACTAAAAGAGCAGTGCACGCAAAGGAGATGGTATCACAAAGACAGACTCAATCCTGCG
ATTAGTAGGAACAGAACAGAGGCTGCAGAGAGTATGCGATGCAAAATCAGATGTTCCACT
ATCATTTGATCCTGTACAGTTGCGGCATATAGCACGAAATGGATGGTTTAATTTGGGAGG
AGGAGAGAACATATGGCATGTCTGCCCAAATGCCAATTGTTTCATCCAACATATGACATG
TCTGCCCAAATGCCAATTGATACATTCAACATATGACATGTCTGCCCAAATTCCAATTGG
TTCATTCAACCGAAATCCGAATAGCATTACTGCACACAGATTTATGGAATCATTAGACAA
GCAGGAGAACGCTTACCTGGAGAAAGTTTGGGTGCGGGAGGTGGCGATGGAGGTGTAAAA
TGCATCTCAGGCAGTGACTTGAGCTCTGTTTCAATTGGCAGATAGCAAATGGAGTTAGCC
AGTACTACTAATATTTGCCCTCTGAATTAATATTGACTTTTCTGAACTCGTTGATAGAAA
CCACCAAGTAATGACGCCCTTAGCTATTTATAAATGTCGCCAAAATTTTGTGAAATTACT
GTAAAACAAGCAACCCAACAAACAGCTTAACTGGATGGTAATCATGACAAATCGTAGCGC
AAATGCAAAAGTAATTCTGGGCCTCTCACTATTTTGTATTTTCTGCTTTACAAAGGAAAA
AGACGCACGGTGTCTCTCCCCCTTTCCACTAGTTCAGGAATGCAAGTGGTAGTATCCCTA
GTAGCACCCAGAGCTCGTTTGTAATCCGCATTACAAACAACCATTACGGAAGTGGTTGTG
CAAGGATCATGAGAACAACATTAGTTAGAAGTTTGCAGAGTAAAATTTGTTTCGATCGGT
GATCAACAACAGGAACGCGACAAGACGCGCATATGACGCACGAGAATCGATCGAAGCATA
CATGTCGCACGAGCAAATATAGGGAGCACGAAGGGACAGATTTATCACCTCGGCACTTGT
CGGCGAAGAGGGCCTCGGCCTCCACGGCCGTGGCGGCGGAGGTTTTCGCGGAGGCGCAGG
TGGGGAGGAGAGCGCCGAGGCGCGCGGCGTCGACGGGGAAGCCGAGGAGGAGCGGGTCGC
GGAGCAGGTGGCAGAAGCATCCCTCCCCTCCGCCAGCGCCTTCGCCGTCCCCGGAGGAAA
CGGCGCGCAGGAACGCCGCGCAGCAGGCGCTGGTGGGCGCGGACGAGGGCAGGGCGGGCG
GCGCGACCACGGCGACGTGCGCCAGGCACGGCGAGAAGGACACGATGGCTGCCGCGCACG
GCGTCGCTGGTGGCTCCTGGGACAACGCGGCGGAGGCGGCGTGGGCGTGGAGGGCGGTGA
CGGCGAGGACGAGGAGGAGGAGGGCGGGGGGGGCCATGTCTCAGGCTCTCAGCACGCCCG
TCCCCACACTCTCTCTCTCTCTCTCTCTCGTATAGGGGCGTGGGTGGTGGGTGATGATGC
CTTGGTGGTTTTAGGGCGTGAGTGTGTAAAACCGAGGGGTTTGCAAAAGCGATCGTGCCC
GTCTGTTAACAGAGGCGGCGCAAAGTCGCCTACGTCGGACGGCTCGTGATGATCCACTGC
CTGTCGCCAGCCGTCATCAACACTCGTTTACAAGGAGAGGGGTTCAACCTAACCTGGATC
AACGCAATCCAGTTTACAGACATTTACAACCAATTTGGGCCACACACGTTCACGACGGAG
CCAACATTCATGCATAGGAAAGGGCAAGTTTGTTCATCGAAAAGGAAAAATTCATGTGAA
GTGAATTTTTTTTGTTATAACAACCATAATCATAGGTGAAGAATCAATTTGTTAGGGGGT
CTAGCCCCCCCCCCCTCCTCCTAAATCCGTTCCTGTACACGACTACAATGTGGTCAAATT
TCATGGACATATATCCGCGGAATAAATCCACGGTTACTGATGTCGAAGTCCGTCATTCAA
TATTGTCCATATATATTCTAACAATTAATGGATAATAATTGAGCTAACGGACGGAATTTG
TGCAAAATTGATGGATTTTGAAATAAATAAAAAGCGATTTATGTAAACACGACGGATTTC
ATATGAACATGATAAAAGTCATTACATTTTAGACATATTTCAACTAAAAATGGAACTCAC
GAGGTATGATTCCTAATCAAAATGATCGTTAGCATCCGTTCCCTACCAGACCACCATGAG
CCCTGGAAATTGAAGCTATGACACTTGCCTTCGCCTTCTCCAGCTTTGCCTCTGTAGCCT
CCACCATCGCAGCTTGAGCAGCTAACCCCGACGTTTATTAACCCGCCAAGCTTGCCTTCA
GGTGGATGGGAAGAGTGGTGTCCTTCCTAGACCCGAGCGATAGCGACTTACCATGCACCA
CTCTTCCTTACTGCCAGCGGCGCTCGCGGACGTGCCAGCTTCGTGGTCGTGGCAACGGGA
AGCGGCCTTGGTGAAGCGAGTGATGTCCTCCTCGTCGTCGCTCTTGCCCCACACCTCATA
TGTCGCCTCGTTGAACTCTCCTCGTCGCCTAACGCTAGCGGTACTGCCAACAGTCGAAGC
GGATCTCACGGACGGAGTGGTAGGACTCAAGCAGCTAAAAGTGCATCCAATCCCTTGGTG
GAGTTGGTAATTATTAATAACATATATCTCATGTGACTAGGAAACGACCTAATTCGCATG
ATCGTCACCAAGGAATTCTTCATCATATTCTCGTTCTTTCATGCTTGACCAATAAAATAA
CCAGTGGCAAGCCAATAAGTACTTTTAATGTACTTGCAACCAACTCATGTTTAGAACAAG
GTAAAACAAATGCATGGTATAACACTAAGTAGGTAATTTTGCAGAAAGCTAATTTTTACT
GCAATGACATGTTCTAACAACTTATAAAACATGCATCATGTGGTTATGAGTATCCATATG
AACTGTTACATATATCAATATAAAATAAGTTTGGAACAACTCCATTTTTAAATCATCTCA
CCAAGTCATTTGACTTAGCTCAAGTATTTCTTTCCCACACGCACATCAAGTTTTGTAAAA
CATTGGATGTAGTTTAAGAAGCAACACCCAACTGTCCTTGACCGCAGACATGACTATTCA
AATAGTTTACATTCTGTAGAGGTTTCACACTTTATCCACAAGATTTAGGGAACTTTTGTG
TCAAGCCACGACTCGTCCTACATTACATACCTGAGGTAAGCACCCGAACAATGTCTTTCC
TTGACAAAACTAAACAAAGAGTCCACTTGTTGGTACATAGCCCTCATGATGTACATCACA
AGTACCATCCAAGAAGAGACACAACGGTGTGCCCGGTCACTACTAGGGAAAGTCTAGCAG
TAGCGCGGGTTTTCCCCGTATCAATAGCGCGGGCACCCTTGCTACTGCTACGGTGCTACA
ATTAACTGTTAACAGTAGTGCGTATAAACTCGTGCTACTGCTATCGATGTGTAGCACTAG
CGTGTTTTACCTTGCCGCGGTGGTGCTAAAAGTTGTAGCGTGTTTAGTCTGAGCTCGCTA
CTGCTAATGCCTCGCTGCTGCTAGACACCAAACCCGCACTATTGCTACTATTTTCTGATT
TTTTTACAACATGTTTCCTCTGTATTTGTACATGTTTTACACTGTAGTCTCTATCAAATA
TCATACACACAATAGTCTCATCATATCATACACATACAAATAGTCTCATCAAATCATGTC
ATCATCATAATGATCACCCATTACAAATGATGTCTCTCGCCATCATCTCAAAATAGTGAT
ACAAATTATGACATGTCTCGAATACATGCAACTTCATCGTCATCCATCTAAACGATGATA
TAGAAGAGAAGAGCTATCACTATGAGTAAGAGCAGAACTATGCACTACGCGAGGCGTCGG
TTTCGATTCGTTTCTCGTGCTAGCTTCCACCTCAAGTATCTAACTTCTGCCTCTCTTATG
TTGTCAAACCCTTTCTGGATGCCGCCCAGGAAGCGATACATTGGGCCCTGACACTCTAGC
CACTCGTCGTACACTCCCGGAAACCTCCCTATGTACACCGCATAGCACTGCTTCTTCGCC
ATCGAGGACCTATTGTGACGCCCCCGCCTTAATCGCATGCTAATCATACACGCAAATGCA
TACGATCAAGATCAGGGACTGATTGGAAGATATCACCACACAATTCTAGACACAAACAAA
AATAATACAACCTTTATATTACAAGCCAGGGCCTCGAGTACTCGAATACATAAGCTCAAA
TACAAACGAGTTAGCAGAAGCAACAATATCTAAGTACAAACATAATATAACAAGTTTATC
TTAAGAAGGCTAGCACAAACATAACCATGGATCTAAAAGGCAAGGCCTTCTGCCCGGGAG
CCTCCTATCTAATCTTGGTCGGCGGCGGCCTCCATGTAATAGTAGGTTCCATCGGGGTAG
TAGTAGTCGTCGACGGGATCAGCTGACTCTTGGGCTCCGTCATCTGGTCAAAAAAGGGGA
GCAAAGCAATGGTGANNACTCATCCAAAGTACTAGCAAGTCTTACATCGTATTTATGCTA
ACTACGTATTAGTATCAAGGGAAGGGGTTGTATGTGTGGATTATACTGCAGAAATGCCAG
AATAGAAGGGAATATCTAGACTAGCAAAGACTAGCATCTTTAGCATCTTGCAGCATTAGA
AGAGTACAAATTAGTATAACATATGTAAGCTAGTAGTATCAAGGCCCAGAGATCCTTCCT
CGATTGTTGGAAAATGGTTATTATTATATTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTATAATTGTATTAACCGGAAACTATAATACATGTGTGAATGCATAGACCACACCATG
TCCCTAGTGAGGCTCTAGTTGACTATCTTGTTGGTCAA