Map Locations of contig_44587 (11050 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_44587

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_60617 12 4152 bp MLOC_60617.9 Available Available LOC_Os05g51620.1, FRAME:-1, EVALUE:0.0, 13105.m05571 protein expressed protein





CDS Structure of MLOC_60617






Contig Sequence (11050 bp)

>contig_44587 11050 assembly3_WGSMorex_rbca.fasta
ACACGCACGGTTAGTCCTTTACGGTACTGTCATCAATCATCAAAATTACTTAGGCATAAA
CTATGCCTGAACAAGTATGTTTGACGGTGGTTGTCTGCATTGTAGATGAGCTCGGTTGAC
TCCTCATTCATGGAAAATTCATCGTCGGACGAGGAATTTGATTTGCATGAAGAAGAGGAC
ATTGCTATGCTAGTGTCCATGCACAAGGGGAAGAATCCAAAGCTCGATGGTTCTGCCTAT
GGTCGTGCATTCATTCGGAGAGAACGGATTGATGCACACAAACGGTTGATGTGCAACTAC
TTTGGATCACCACCAGTTTTCCTGGAGAATTACTTTCGACGTTGTTTCAGAATGTCGAAA
GACTTGTTCATCCGCATTTGCAATTCAGTGAAGTAGCATATCCAGCCTTCGAGCAGAGAA
GCAACCATGCTGGGTTGCCTGGCCATAGCATTGAACATAAGATCACTACCGCTTTGCGCA
TGATGACATATGGTGTTCCGACAGATTACATTGATGACAACTTGACGATGGCAGAGAGCA
CCACTATCTTCTATGTCAAGCATTTTGCAATGAATATGGTAGAAGTTTTGGTCCATGGTA
CTTGAGAGCACCCAATGCTCAGGACACTCGTAGGCTTTTGGAGATGAACAAAGTTCGAGG
GTTTCAACGTATGTTTGGGTTTGTGAATTACATGCATTGGAAAACGGAAGAACTGCCCAA
AAGCATGGCATGGATAATTCAAGGGTCATGGGAAAGATGCCACTATCATTCTTGAGGCAG
TTGTCAATCATGAGACATGGATTTGGCATGCATATTTTGAGATGCTTGGGTCTTGCAACG
ACATCAACGTGCTCGACCGGTCACCTCTATTTGCCAAGTTAGCAAATGAAGAAGCACCAG
CAGTGACCTTCGAACAAAATGGCTGCACATACAACTATGGGTACTATCTTGCAGATGGGA
TCTACCAAAGGTGGAGTACATTTGTCACGCCGGTTGGAAAACCCGAAGGTAAGAAAGAAC
TCGTCTTTCACAATGCACAAGCGACCGCTAGAAAAGATGTTGAGAGGGCTTTCGGGATTT
TGCAATCTCAATTTGCTATTGTGCGAGGACCATCTAGATTCTGGGATCAAAAGAACCTTG
GATACATCATGACTCCTTATGTGATTATGGATAATATAACCATTGAGAACGAGCGTGGAA
AATACTTAGATTACAACTTCTATCACTTGATGGGCATTCCTGTTAACCCCATGCGAAAAG
AACAACGCATCGCACGTTTCATGAAGGTGTATAGCGACATTAGAGACACCGATGTGCATG
ATCAACTCCAGAAAAATTTGATGGAAAAGCATTGGAAATGGCATGGCTAAAGAGCCGCAT
AAATTCATTATTTGTTTGTGAAAAACTATGTTGTATTTGGGTTGCATCACATCTCGTGAA
TTTGAAGAACTATGTAATAATTTAATATTGTGGACCTGTGTAATTTTTTAATGTTGTTTT
TATATGTTTTTTATAATATGTGCGGTTGTACAGTGGCTGAACAACAATCGCGATGCCGCC
GACGGATTTTGCATCTTCGTTTTAGACCATATGTTGGATTTGTTGTTTTTTACATCTTCG
TTTTGGACCATCTGTTGGAGTTGAGCTTTTTCCGGATATGTAAAAAACACTTTTTGGTGT
TTTAAATTTGAACCATCATCGTTTTGAAGCATCAAAATATATATCATCTATTGGAAATGT
TTTTATGATATGATCCGCTTGAATGTCGGTCTATTTTTTTCTTTGCAAACCGTAATCGCA
TATCAAATGAGTAGTACTACTAGCAAGTCAAATAGTGATTGAGTTATTAAATGTACAATG
CATCTAATTGATAGTAAGCGAATTAATATATCTTCTTCATGAGAGGAAAGATGAATGTTA
ATACAAAAATTATACCAAGATCAACAAGTAATTGTGCTCAAATAAATATTGATGTATTTA
CATGGAGTATATATTTTTATATATATGGACAACATGCAAGAAAATCCTTATGAAATGGTC
TGCTTTAATCACAATATATTTAGTTCTTTTGCTACACGGAGTGTAATAAGAAATCATAAA
TAAATTAAGGATCGAGTGAGTACTCTAACTCTTCTGAATTCATTAGTGAAAAAATGCACA
CATTGTTTTGCAAATAAATAAATAAATGTATTTTCGTTGTGTCTTCCATGAGTCGGAATT
TTGTTGTCATGACCCATGGATGTGCCCATGGCCCATGCATCATGGACCCCCTAGGACATC
AGCGTGATCAGAAACGCCCAAGTCCGATCGAACGTCGGGAAGGCGCCAGACAAAGGAATT
TCCTATACGCCACTCATTGCGGTGAGTAAACGCCTCTTCGCAAAGTAGGTGCGATCAAGC
GACGGGATTTGGGCCGGTCCGTTAACACTTCCACCGATCCCGGTTTTGAGAACTTTCTAG
AGGTTTTTAGCCGGTTTTTTCCGGTTTTGGGAACTTTCTAAAAGATTCCCTAAACCGGTT
TTTTTTCGTTTTCTTTTTCTTTATTTTTTCGTTTTTTTCTGTTTCTGTTTGGAAAATGAT
TTTTTAAAAATGTTCAACAATTTGAAAAAATGTTCCAAAATTTGCCGGAATGTGAAAAAA
TGTTCCGGATTTTTAAAAAATCTTCCTGCATTTGAAAAAGTTTCGTAATTTGAAAAAATG
TTAGAAAAAGTTCCGGAATTTACAAAATGTTCCGAAATATGAAAATTGTTTCAGTATTTG
AAAAAATGTTCTAGAATTTGAAAAATGTTTCCGAATTTGACGAAATGTCCCGAATGTTCA
AAAAAATGTTACAGAATTTGAAAAAATGTTCCAGAATTTTAAAAAATCTTTTGGAATTTT
CAAATATGACCCGGAATTTTAAAAATGTTTCAATATTTGAAAAAAAGTTCCGGAATTTAA
AAAATGTTCCATAATTTGAATTTTTCTCGGAATTTGAAAAAATGTTCCGAAATTTTTAAA
AATGTTCCGGATTTTTTAACTTTTCTGTTTCTTTTCAAAAAATGTTCTGTATGTTGTTCG
CATTTTTTTAAAATTGTTCACAGTTTCGAAAATGTCCATGTTTTTAAAAAATAATTGGGA
AATTCAACTTTAGTTCGTTTTCATAAAAAAATGACAAAAAGAAAAAAGAAAGAAAAACAA
ACAAAAAAAAGCAGAAAAGGAAAAAAAGGAATTGGGCTGGCCCAGTCAGGCGACCGCCCC
GTGCGACCGCCCCGTGCGACCGAGGGACTCCCTGCCGCATATTCTGCGTAAGTAGGAGCT
CCCCCAGGCAAGCAGCAACGCGAGGCGTGATCGGGTGATGCAAAGCGTGGATGCCATCAG
GAGGCGGGTACTCCGACATCCTATATAGAAGTTACATATGTTTTTTTGATATATCTAGAG
AAAAAACTTGTTTTTTTTTTCTTGAGCCAAAAAAGTGATTCTCATTCTGTCATGGACATG
AGTGATCTTGTGAATAATGCTACCAACATTACACCTAGTGATGATTTTTGTGTCAAATTA
AACGGCATATTTCCTATATTACTAGTATATGCAGCGTGTCCCCCCCTCCCCTCATGTTGC
TTATTCTCACTTGCAATCCATGGACCCGCAAGCCTGCTACCTGTTGGAGAAGATGGCCTC
CAAATCCTTGTACAGCGCCTTGGACTTGGGCCTCCACTCCCCCTTGGCCTTGGAGTCCGC
CGACTGCGATGCCACCGACGAGCTCCGGCTCCTCTTCCCCTTGTACGCGGTGCTGCTGGA
CGGGTCCTCCCCGTCCCTGCTGAAGCTCGCCTTGGCCATCTCCCGCAGCTGCCCAAGCCA
CGACCGCTCGTTCGAGCTCCTCTGCGCCTCGCCCGGCACCGTCTGACCCGTGGCGCCGCT
GCTGTCCGGCGACGGCTCCTGCTCATTCTGGCCCGCCAGCGGGTCGCCCAGCGCCGACGA
CGGGAGCACCAGCAGCAGCAGCCCGACTGAAGCCGCCTTGGCGCCCTCCAGGAAGGAGCT
CCTGTCCGGGCTCAGGTACTGCACCTGCCGGTACAGCGCGTTCCACTCGTTGCACACCTG
CGCCGCGAACGCCAGCGAGAACACGCCGAGCATGGCGATCCCTACGCCGCCGCTCTCCTC
GACCTCCTCGAGCTCGCCCCTGCCGTCGTCGCTGTTCCGGTCGATGAGCACGAGGCAGGC
GGCGAAGACGAACACCTCGCTGGCCACCGCGACGATCTCCACCAGCTGCACCCGCTTCTT
GATGAAGGGCTTCTTGAGCAGCATGAAGAAGAGCTGGAACGACGCGACGGCCAGCACCAC
GACGGCGTGCGCCCGCGACGACCGGCCCGACGACGCGTGCGCGCCCGCCACGATGCCCAG
CGCCACCCGCTTCACCGACTCGAGGAAGGTGTAGTAGATCCTCAGGATGCCGAACACCTT
CTGGATCACCGGCGCCTCCGCGTCCTCGTTCTCGTCCTCCGACGCCATGATCCGCTGGTC
CGCCGCCGCCCGCTTCCCGCCCCCGCCCACGACGATCTGCGTGAGCATGTACTTGGGCGG
GCCGCGCAGGTCCTCGAACAGCGGGCCGAGCTTGACGAGCCGCGCGGCGCGGGCGGGGTC
CTTCCACGTCCACTGCCCGCGCTTGCCGGGGCCGAGCGTCCGCCTGATGATCTCCTGGTA
CCACCGGTGCTCCTGCCCCTCCTGGTGCACCTCCTTGTACTGGAGCAGCCTGCCCGTCGT
GATGCCCAGCGACAGGAACAGCAGCAGGCCCACCAGGAACGCCGTCAAGATGCCGATGAG
CACGATCCCGACGGCGAGCCCTCCGGTTGTCCCACCTGATCCATATCATTCATCCCGGGA
AATCAATCACACGATCTCTGCATCGATCAGAGCATTGAGATGAATGACGTACCTCTGATG
AGCGCTGCAGACGCTTGGGATATACAAGGCATCGCAAGGATCGCAAGCATGATCTCAAAC
CTGGGGAGGACGAGTGCTCCGTACTTTCCTGTGCCTCCTCTGTACCTTAATCTCAAGTAG
AGGAGGAGAAGAAGATGCAGCAGCATGAGGCCTCCCCCAATGACACCCAGCCACAACATG
TTTCTTCCAAAATATTTCCACCTGCATTCATGCATGCATGTTTCAACACCTTCATAAATA
ATTCAATATGTCACTTGATGATAAGTCCCAAGAGTACTCGATCGTGAAGACAAAGTATCA
TACCCGTCCAAATCTTGCAGCTTCATGATAATCTGTGCTTCGGGCTTCATGTCCTGATTC
TGCATTTCAGCCATGCCATGCTCATTCAGCATCGAGAGGTTTAACAAGAATGCCAACTCT
AAAAAACCGACGACGAGCATGGAGACCGAAATCAAACGCAAGGGGAGAAACACTGAAATT
CATGCGACCTCAAAGAAAGACCGGTACTCCATGGCGGTCAGCGGCTTCCCGTCCAATGCC
CGGATCTGCAGCGGGATCGGCGGCGGCTTCCCTTCTACCGGTATCTGCATCGGCATGATC
TGCTGCTGACCACCTGGTGCAGGTCCAGGGTAGTAGGGATCAGCTTGTACTACATCACTC
CTGTCCACCAGCTCCGAGTACGCAATGGCAGGCATGGTGGAGTAGCCCACAAATGGATCT
GCAGAGGGACCCTCCCACGGAAGCCGGATGTACGGGATCGTCCACTCTATCCCCTTGGCC
AGCTCGTAGTACTCCACCGGCAGATTTATCGACAGCCATCTCGACAGAGCGAAGATCTGG
ATGTGGCATGCCATTCTCTGTACAAATAAAATAACACAACAACGATCGATCATCGTCAGA
TGGTGACTATGTGAGCGATGAGCCGGCTGAAACTGAAGCCATCACTGGGACACCAGTAGC
AGAATTGATGCCCGTGCCAATTACCAGAAGATTTCGTGATGGCTCGGAGATGGAGTAAGA
CGAAGGCCTTGTCATGGCGCCGGATGCGATGAGAGATGATGTGGAGACGGTGAGGAGTGT
GGCGACGATGGCCGTTGCTGCAAATATAACGGTGGCGATGGTTGCGATTGACGAAGACGA
TGCAGGGACAGAATCTGCAAGCAGAATCATGGTAAAATCATAAGGATGCTCCATTGCCTG
GTTGCCATACTGATGATGATGGGATCCGAACAGTGTTTATGAATGATGATCGAAGGGTTG
GATTGGGTTGTTCCGTCGTTGTACTGTCAATAATAAATGAGTAGTAGCAAGCGAAGAATG
AATGCTATTGCCCCATGCTGATACATACAGTGTCTCACTTGGAGGCGGTCTGATGGCAGA
TTGGGATTCCCAGCCACGTCCTGAGCTGTGTTCTCGGCAACCTGGACCGAAACCAGCTTG
TCAACTGCCAGGATCTGCATTGTGTATATGCTCTTACTAGCTTCATGGAAGCTGAAACCA
AAACCAACCAGCCATACATGAAGCAAACCATTATATAACATCCTAATTAACTCCTAAGGT
AAAAACAATTTAGTCGTTTATTCAGATGTTCATGCATATATTGTGATATCTACTATCTTC
CTGTTGATTCTTGCCTCAATAGTTTGCCCCCAGAAAGCTGCACTGCAGAGGAGGTGAAGT
TAAACACGGGCTTTTCGAACTTGATCAAGACGGGGATGGTGTGTGAGCTTGTCCTCACGG
TCGACGTCGCGAGTTTAACAGAAGGCCGTCGCGTATCTGTCAGCAGCGCCATCCATCAAG
CACGCAGAAGAGGCAAAAATCATCAAAACTGAGCATGGTGGCACTGGCATGCGTTCAAAA
TCAAAGTGATGGAGCAGGAAGAGGAATGGGAATAAATACCATATAGGAACGTGAGTGGTT
GTGATGAGTAAACCGGGGTCCCCTGTCTGCTGATTACGGAACTCGTATCACATGCAACAG
TCACAACAGCGGTGCTCGATATCTTGTTCACCTGCACACAAACTTAGTTAACATTCAGGC
GTATGCATGAATCGAATCAAGCACCTAGCTAAATCTAATCATTAGCAGTAAGATGGACAG
GGAGAGAAGGACAGCGAAGCTTACGACGAAACCGAACCGACGGTTGCCGAGCGTGCTCCT
GTTGGTCGGCGTGAGCACGGCGCCGGTCACGGCGAGAGCGGCGAGGATCTCGGCGGACGA
GTTCATCACCGGCTCGGCAAAGGACAAGTATATCCTCAGCTCCCTGTCGTCGTTGGTCGC
CTCCACCACCCTCGTGGCGCCCTGGATCTGCAGCAGCTTCTCCGGGATGCTGGCGGTGAT
GTTCATGGAATCACTCCTTTTGTCTATCATCAAGTTTCGGGTTCAGATCAGTGCGTTGCA
TGCAATGTAGGAGTATGAACAAAAGTTGGGACGAGGGTACGTACCGAAGCGGAGAGTGAA
GCTCGAGTTGGAGCTCCGCCGGAAGCGGTGGCCGGCGACGTCGGTGCAGAACCCCCTGCG
CATCACCAGGATCATGCGGCCGTAATCCACGTCCGGCGACGGCGACACGGCGACGGAGTA
GCGCAGGCCGGGCACGACGGCCTCCATGGTGGACGGCTCCACGCGGCCGGGCCCGTACAC
GATGAGCTGCAGTTGCCGTGCAGATTCGTTCGATGAGACCAGAGATACTCTTGTTCGTTT
GATGAGAGTGGTACCATACCAAGCCGATTGTCTGTCACACACACACACGTACGTCGCAGT
AGGTGGCGTTGCAGGTGAAGCCGCCGCCGCCCGGGCACGGCTCGCTGAGGGAGACGAGCA
CCGAGACGTTGGGCGCGCTCGTGAACGCCGACTCCGCCGCCACCGTCGCCGTCGGAGGAA
CGGTGTCTGCATGTGCACATTCGTCGTGGTCGCACGGTCAGTGGAGACTGATTTTGCAGC
TAAGGTTGAGGTTGGGTTTGAATTTTGATTGATGGAAGCGTTACTTAACCAACATCCCAG
GCGTAGGTGGCGCAGGTTGGGCCGGCGCTGCTTCCTGATCCTGATCTCGGCGTCGCGCAC
GCTGCGAATGTGTGGTTCCCGTCCTTGAGCCCGGCAAAGCTCACCACCTCCGTCCCATTT
CCGTTCCCCCCGCAGTCCGATCGTCTTTCGCCGTCCAACTGCGTGTAAATTAACAGTTTT
ACCACAGCTCTTCCGGGGTGCTCCTACTCAGGTTCGACTGAGTACTGTTTGCTTAACTAT
ATTGTGCGGACATGTGGAATCTATTTGGTTCTGTTTTTCTGCCGATGCCAATGCTTCTTT
GTTTGTTGTCATCTCTTAAATAAAAGTCCTTCATGTGGCAGCGAAATTCGAGAAGACACC
CTAATGTCAGACACAACTTTTAAATTATTGTTATTTTTGACCCCTGATAATTACTGTACC
GGTAGTAATGAATCGCTCTGTAGAACCATTCAAGCATCTCGTACAGTTTAATTCAAGGCC
AACTTCATGCCTTGGTTCTTAACTACTTACTGTACTACTCTAACTGTAAACTAGAATTGT
CCGGAAGTAAGGATGTACTTGGACTGAACCTGACCAAATGAGCACCAACATTTGAAAAAC
GGAATGCGTTGAAAATTCGAAAGATGGAGCTTCCTTACCTTGCAGGTGATGGCGCAGTCC
CCGCAGGTCCATCCGCTGCTCTGCACGGCGCGGAAGGCGAACACCGCCGACGCCGACGTC
GAGATGCGCGGCGGCGCGCTCGTCAAGCTGAGGGAGACGTCGCCAGCAGCAGCAGCGACC
GCCGCGCCCGAGCAGAGGAGCACCACGGCGCTCAGCAGCAGCCGCCGTCCCCAGCTCTTC
CACACCATGGATGGATCCTTCCCAGTCCCAGGGTCAGTCAGCTACTAGCTGTTGCAGATG
CACAGTGCTGAATGCGTGCGTGAGGAGGGAGAGGGCAGCGGGCAGCGGGCAGCGGAGTGA
ATGCCCAGCGCAGTGTGCATGTGTGGCTGGCTCGGGGAACGGCGCGCTGCCTATAGCTAG
CTACTGTATTAACGCTCCCCCTGGATATACTGGCACTGGCAGTGAGCAGTGCTGAGGTAT
GGAGGCGGGGGAGGGGATGGAGGGGCCGCGCGCGGCCAATTAAGGCAAGCACAAACCGGC
AAGCGGCAACGGCATGTGATCGTGGCCGCGAGGCCAGGGGTTTTTGTTCCGGGGCGGAGG
AGAGGGGATGATGCACATGAGGACCAGACCGTTTCTACTAGCCTAGTTTTTTTTGCCTTC
CCTGATCTCGTGGATTGGCTGCGACTGCGAGGCTTAGCTACACGCTTGGATTCTCTCTCG
CTGTCTCTGTCTCGTGAAATCTCTAACGCGCGAGAGCGAACAACAGTTAAGAGTTTAGCT
GAAAGAAACGGGCAGGGGCTGGCTGATACTTTGGTGGATGTCAACAACTGCTGTGGACAA
AACCTCAGCAATCAGCCAGTCATGGAGGTGCTCGACGACTGCCCTGTGATATGAGCCAGT
GACTGAGGATATGGTATCGGTCAGTGATTGGGGATGATGATGATGATGGGAATCACTGGC
AATCCGAGTGTAAATTACCATCTGGTGTGATAATAAGCTGATAATACTGATGAAGGAAGA
GGGCACAGGTACAGAGAGGCGCCCCACATGCTGAAAGGAACAAGGAACATCTGTATGCGC
TGTTAATACTAAAGAACTACTGCAAGCTCTGAAGGAAGCAGCTGAGGTAAGAAACAAAAT
GAGTGGGAATCAACCTGCACTGGGGCTAAGATCTGTCTGCGCACATGCACCACCTGCCAT
CACATAATAACCACATTGCAGGTGAGCTAATTCCCTTTTCTACTCTTCTCCTCACCTATT
CCCCTCTTCATATTGTAGTAGTATATAAGCTACTTAAATTACCGATCAAGATGTTCGGCA
ACAGTTGCTCCATAAAATATCAGTACTCCAAAAAAGTACTTCCTTCGTTTTTAAATATAA
GTTTTTTAAAAAATTCAAATATGAAATGGATCTACACTTTAAAATACATTTATATACATT
CGTATATAGTTTATATTAAATTTCTAAAAAAAATTATATATGCTAAGCCTACCGATTAAT
TATTTTGAAGGGGCTTGATGAAGGTCAATTCAATCTTTTTTAAGAGAGGAACGTTTAAAT
TGGTGAAGGCCGGCAGCGGAGCGAGGATAAACGAGTGCCCCGGGTAAGGGCATTTCTAAC
CGATCCCTCCACTAACATATGCCTAGTCGATCCCCAATCTGCCGTTAGTGGAGTATGTAT
TTACTCCGGTCCCAAAAGTCTTTCTATTTTTACTTCACCAATTGGCGGCCAAGTACAACG
ATGCGCCTCTCTTTCGCGTTCGTGCCGCTGCTGCATCTTCTCGACGCGCCTCTCGCCGAT
CCCCCGCCTACCCCGCCGCTACCTCGTTCCATCCCTTGCCCTCCGTCTCCGTCCTGCCCG
TCGGCCAGCCCATTCGACCCCCATCGTCGTCGTCGGAATCAAGGTGAAATGCCGCCGCCA
TCGTCGCCATTGCTGATTTATCCGATTTCTTTCGAGTTTCTTCTCTTTCTAGCAGCCGCC
GCATCTCACCTTGCTTGCGAACCGCTGCAGGTCACCCACCGCTCGTCGGTTCAATCTAAA
TTGTTAGGAAATCTGTAACTTGTATTTCCAGTAGGCCATAGGCCAATATATACATACATG
TACAAGTGTAGAATATTGCAGGAAACCACTTATATAATGCAGGTAAATATGAAAGGCTAC
ATGACTATATAAATAGTACTCTAACAACCCCTCCTTTAACTCATGATGGATTAACAACAC
TAAGTTTGAAAAGATAGAAGCGATGTTGGGCTCTAGTCTCGGCCTTCGTCGGGAAATCCA
CCAACTTTAATCGGAAGGCACATACTGAAGAGCAATAACCCGATCCTGCATAACAATGCG
CACATAGATAACATCAACACCAATATGCTTGGTGAGCTCGTGCTTCAAAGAGTCGCGCGC
AATGCTAATAGTACATGTACTCTCAGATAATAGCAGAGTAGCTGTAGTGACAGAAACATC
AAAATCCTGAAGTAACCACAGTAAACCGGAAACACAAATCAACACATGGAATTCACCACA
CGGTGCACAA