morexGenes - Barley RNA-seq Database

Contig contig_44502
Source Contig contig_44502
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_44502 (6412 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_44502

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_60541	1	635 bp	None	Available	Available	None
MLOC_60540	3	1709 bp	MLOC_60540.2	Available	Available	LOC_Os01g43420.1, FRAME:+2, EVALUE:2e-161, 13101.m04486 protein expressed protein
CDS Structure of MLOC_60541

CDS Structure of MLOC_60540

Contig Sequence (6412 bp)

>contig_44502 6412 assembly3_WGSMorex_rbca.fasta
CAGACGAGGGGGAGGGGCGAGGTCCTGCGCCTGCTCGCGCGTGTAGATGTCATGGAAATT
CATCTACGCGCGAGGCGTTCCTAGTTGCCACGCCGCCGCGTCGTGCGCGGTCTCGAACGT
GCCGAGGCCGACGCGGACGTCGCCGGACCGGATCTCGGCATAGTAGGTGCCGGTGGGGCG
CTCGCGGACGCCGCGGTAGTTCGAGGATGCACGGCGGCACAGAGGCATGGTGACAGAGGG
AGCGGCGAGGGAGAGGCAGAGGAAGAGGCAAGGGAGAGGCGAGGAAGCGACGAGGGAGAG
GCGTGTGGCTATGGGCAGCCGCGTGACGGGCGCGGCATTTTATAGCGTCTGAAAGCGGTG
CGCCAAATCTGACGCGCGACCGCCCGCTTTCTCCCGCGCACAATAGTTTTACGCGCGCGT
TTTTTTACCGCGTTCGCTGGAGCGCGATTTCGTCCCGCGCGCGTTAAAAATCATGTTTAA
TCCGTGCGCACGTTTTTTAGGTCACTGTTGAAGATGCTTTTAAATCACTAATTTAGTGTT
TAAAAAGCTTTTATATTTCGGGAGTACTAGATTATTTAGACTTCCCGCGAAGGAAAAAAA
GAGGCTGACAAAGCTTGCACTCGATTCCGCTAATCTGCTGCCGTCATTTGGCAAGTGCGC
GGGTGGGTGCTGCGCACATTGACTAGAAGTAAAGCGACTAGCAACCAACACGACCCCGTC
CGCCGTCGCCATCCGCGCCCACCCTCACCTCCTCGCTCGCTGCCCCACTTCACCACCTGC
CTCCACTCCCGCACGCGGCACGCAGCCGGAGCCGGAGCCGGACAGCAGCTACCTCCTCCA
ATACGCGAGCTGCTGCTGCACCCGCCAGGCGGGACAGCAGACGCGAATCGCATTCGCTAC
CTTGCTTCCTGCTGACGTGCCTTGGCCTCCCCGCTTCCCACTCCGCTCCGCTGCCACCGA
CGACAGGAGCGAGCAGAGGACGCGATGCAGCAGCAGCAGCAGCAGCTGCAGGCGCCGCCC
TCGTGGGTGGCCGGGTCCGACGCCGCCCGCCCTGCTCCCGCCACCTTCGACGAGGCGTCC
ATGGAGCGGAGCAAGAGCTTCGTCAAGGCGCTCCAGGTACGCCGCCGGCCAGGATCCGGG
AGATCCCGCTGCTACCCAACCTGGCTTTCGCCTCAATCGCCGTGCCGATAGATCCGCGTT
TTCCGCTTCTTTTTGGTATACTTATATATTGGAGTGACTTGCGTCTGCGGCGCGTGCAGG
AGCTCAAGAACCTGCGCCCGCAGCTCTACTCCGCCGCGGAGTACTGCGAGAAGTCGTACC
TCCACAGCGAGCAGAAGCATATGTGAGCCATTCTCGTCTCCACTGCGATTCCCAGTTCTA
GCACTCAATTCTGTAGCAACTCGGTCGCAATTTCTGGGGTAACAACAACTTTGCATGTGT
GGCAATCATTGTTTACTTGATGTTGCTGCCCGATGTTTAAACCAAACTTTCTGCCTGACT
TCTATTTTGGTGTTGTGATTCTACCAATGATGGGCAATGGCTTTATATGAAGCATTGATT
GGTTCAGTAGTATGCTAGTAGCATATTTGCACCCATCTACCCATGAGGCAGGAGCTGACA
AAATAAAGGGCAATTGATTGAGAAACACTCTCCAGGTGCGGAGGCTTAAATGCTGAGACA
CCACTAGAGAATTAATCATGGGTACTGAAGGCTGTAGGAATTTTCGATTTCTTTGCACAA
CTGTTCATAATTCAGATTTGCTATCTTACGGTCGCTTGAGAAATAGTTATTCCAAATTGT
GCAACTTCGCGATTCTCATTGGATAAAGAATAAACACTCAGAATCGTCCACCTAGAAGTA
AGAACTTCTTGGTTGACTTAGAAATAGAGGCTACCTTGTTAATTTTTGTTGAATGGATGC
GTCCATCTTCTGCATCTGATTGCACTGCAAATGGAACCAAGGATTCGTAAATATGGAAGA
ACAAAATGACGCATCAAGTTTCTGCTAGGTGATCACTGTGCAGATGTGCAACATGCAGTG
AGAGGTTGCCTGATCATTTTTCCCATGTTTCTTGTTATCAGCGTGCTGGACAACTTGAAG
GATTATGCTGTCAGGGCCCTGGTTAACGCGGTCGACCACCTTGGCACAGTTGCCTACAAA
TTGACGGACCTGTATGAACAACAGGTTTCAGAGGTCTCAACTGTTGAGCTGAAAGTAGCA
TCCTTGAACCAGGTACTGACTATTTGAGCACGAGAATTTGTGCTGATAGAGCTGCAGGAT
TTACGAGTGACACTTACTTTCCATGTTCAGCAAGTCCTGACTTGCCAAACTTACACCGAT
AAAGAAGGCCTTAGGCAGCAGCAGATGATTGGAAACGCTACAAGACACCACAAACATTAC
ATCGTACCAAGTAAGGACGTGTGATACAAACATGTAATTCTCAGCCCAAGAAACGATTAT
CATCCAATTTAACTTGTTAAATTTTTCTTAACTAGCTGCGGGAAACAAAAGAATGCAAGC
CTTTTCTGAGATGCAAACAGACGCCGAGTTTGACTTAAAGCCTAAACCTTATCCCTCAGG
TGCCTTTTCTTGCTTCTGTGCACACATGTGGAATTTTGATGCCAAGTATTTCGTGTACTA
ATGCAAAATGTTTTCCTTATTTTAGAGAAGACTCTTTTCTGGCACTTGGCTTCAGAGAAG
AACACCAAAACCAATGGAGAACACCAATCTGAATTGGGGTAAGTATGTCACCTCCATTTT
TCTCCACTCTTCCGAAATGGGGCATTTGATTTGTTGTCATCTGCTTTTGCAGCCACGGGG
AAACGAAAACTACTAAGCCTACATCCAGTGGTGGGTTCAACCTTACAGGTATTTAATTTA
TTTGGTTGCTTATAGCCCCAGTTGAGTGTTTTGCTTTTATGATTGGTACTAAGTGTACCT
ATTTAGGCAGATGTTTGCATAGTTTATATCTGTGTGTACAGACAACAAACATTTTATCTG
AAACAACTCACGTTTCAGGTAAGGAATTGTCTGTGTCTCCCTTGCCCAAGCGTCTGCAGT
CGAATGTGAGCAGCTCAGACATTGTTACGCGTAACATTGGCATGAAGGTAAACCATGATA
TGATGAAATATGTGTTTAGTATTAAGGCCTGTAATTCATTTGATGGTGTAAAACCTATCT
ATTTCCCTCCACAGACAACTTATCTTGTGTACAGATTTGTTGATTATATATTGCGATTGC
CTGATTTACATTTTCAGGATCAGCCTGGTGCAAGGCATTTGGCATCATTCAGTTCTCTCG
ACAACCCAAGAGGGCGTCAAATCCAAAAGGCTCCAGTCCGCACCAAAAGTATGCTAGCTG
CTTTCTTTGTCAGGCACAGGTCCGGAAAGATGAAAAACGTCTCCGTTCGTTGATCAACTA
CAAACCTGCAGTTTGCTCAAGCCCGCCCCACCATGAAGTACATGCAACAAACTCAGTCCA
CATCTCTTATATGCGCATCTTGTATGTTAGTGGTCTAGAGATAGACCTTATTTTGATGCC
CTTTTCATCTCTAAATTGATGACAAAATTATATGGATATAGTCAGTCTTAAACCACCGTG
GAAGTTTTCAGTATAAATGAATGAGATGGAATGCATATGGGTATGTCAATGCTAAGTTCC
TTTCATTTATATATAGATCATAAAGCGTATCTGTAAAGAAAACAACAGAAGATTTGTATG
TCCATGAATGTATGTTCATAGTGTTTTTTTCTGAAAAACTATTGCCACTGGGTGATACGG
GTGGAAGGAAGAAACCTTCAATTTGTATCTTGACATGCCTATAACTTGATGAGGTACTTA
CGTAAGATTGTGATTGGTGCATGGGATGAGGGTCGATGATATTGCCAAAAATTGCATGTA
TGGTCTGTTTTTGTTGGGAGTACTGAGGATGGATGAGATGAAATTATGAGACCTCTCTTG
TCTTTGTTGGAGTAATGAGTATGGATGAGATGAATTATTATATGTTTACATTTATGGCTT
ATTCGGTTTGGAGGAATTTTTAAGGATTCCTAGATGATTTTTTTCAAGGTTTTTTTTTTT
CCTATGGTGAGTATTCGTATCATAGGAATAGAGGCGCAAACTCCAAAGTTTTTTTTTTTT
TTGCAGGAATGGATTGTGTTTATATTGATCTAATTCCTTAGGGTTCTTAGTATTAGGTGA
GACCTCATGAAAAATTCCTAAGAATTGCAGTGGGCATGATATCCCAATCCTTACTTTCCT
ACTCCTATGATTTGAGAATTATGTAAAACAAATGAGCCATTCCTCTTTTTTCTAGAGGGA
ACTATTGATCTCAAACTGGTAAACTGGACAAAACGTAGGTTACCAAACGAATTACAAGAA
CTGGAAAGTACTCTATCTGAGACACATACGGAATAGTTTTTGTACAAAGGCCCACAGTAA
AACTCAAACACAAAATTAAGACCAAACAAAGAGATAGAGGCTTTTCAAACTCATATTCTT
GAATTCTTGCACCAGCACGAATAGAAGACAAGTTAGGCCCCGCTTGGAATCCCTGTATAC
ATTTAGAGCATCTCTAACAGACCTCGTATAACGTCGACCCGTAAAACGCATTTACAGTTT
GCGGAAAAACGGCTTTACGGACCGGCACGAGCGAGGGCAGAGTCAGACCGTGCAAAACGG
ATCCGTAAAAAAGGATATTCGCATAAGATGCTAATTTTTTCCTCACATCTTCTTTCTCTC
GCCCGTGTCCTTGGTTAACTAAATTTGTTCCTAAAAACCGACGGAAAGCGTATGAAACAG
CAAAGTACGGAGTCGTCGGTCTCTGAATCCATCCAGGAGCTAGCTAGCTCCTTCGTCCAC
GAATCCATCCAAGAGCTAGCTAGTTAGCTCCTCCCGTCCCCGGATCCATCCAGGAGCTAG
GTAGCTAGCTTCCGTCGCCGACGCCGAATCCGACCAGGACGAGCAGGGCGGCCGCCAGGA
CGGGCGGGACGGGCGGCCGGCGTCCAGGGAGGGGCGGGGCGACGTCCAGGACGGCACACG
GTGGACGTGGACTGTGGATGCGGAAGTTTCCGTGGCAGTTGGACTCCCGCCAACTGATTT
CTCTCGATACAGGGCACCGTAGGAGCAGACGCGAAAATTGTGTTTTTCAGGTCGGGAGGA
GCTTTTTACCGCGTCCCACAAAAATATTTACGGGTCCGACGTGTTTGCGGGGTCTGATCG
GACAACTTTTTTCATGCGGACCCATATTTTGACGATTATTTTATGGATGGGAGCATTATA
CGGGGTTTGCTAGAAATGCTCTTACAACGGTATGTGATTTAGGGCAATTCCAATCGATCC
TTCATCCGGCATTAGTGGAGTATAATTTCGATTTTACTAACTTTTGTCGTACCTAGCGGA
TCCCCTAAAACGTATAGAGGAGGATAATCTATCCTCCGTCGTCTATCCCATTCCTAAACC
GAGGATACATTTTCTTCACATAAAGGCCCCCTTGTGGCCAGTCGGCGGCTTGCGTTTTTT
TTGAAAAGGAGGCTTACCCCCGGCATCTGCATTAATTAATGTATGCAGTCTTTTATTAAA
AATTCAATCAAATAGTTTTGAAGTCTAGTACAAGCTCACACAGAGCTATACAAAGCCGAT
AAAATAGTGAAATATAAATATGCCACAACCGGTAGAATAGACCTAGACGGCTAAACACTT
ATCCTATTACTCGACTGTCATCCAAACCGGTTGTAAATATTCCAAGCTACCATCTTCCAC
TGGACAGATCCAGTAACCATAGGCTTCCTGGCTCCCGCAGGAGTTAGTAACGATCACATA
CGGATCCATGCGGTGGCTGTGTAGATAACCTACAAAAAAATTGTATTTGTATATCTATTA
AAAACTAAATCATTTATGCAGTTCCAAATAGCCCAAAGCAATGCACATACTCTTATTCGA
ATATGTTTCACAATATTAGTGTGCACCCCATGTAACCACGTCCCAAATAACGTGTGTATA
CTATGATGAGGGTTTATATTAAAGGCTATGTGAAGTGAGCGTCATAAAATCCTGGCCATC
ATAGAATGAAGAAAGAAGTGGTTGATAGTTTCATCTTTGATCACAAAAACTGCATCTCTT
ATTATCCTCCCAATTACGTTTTGCCAAGTTATCCTTTATTAGAATCACTTCCTTGTGAAG
AAAACACAGGAAGAGTTTGATCCTTAATGGCACAATGACCTTCCAAATATGCATTGAATT
TGGGATTGGTCCCGAATCTATAAGATCAAGATACATAGATTTGACCGAAAAGATGCCATT
CGTACTCAGTTTCCATTGAAGTTTATCTGCCTCACCATGAAGGTATATATCCATCAAACT
TCGAACAAGATGTAGCCAGGATTGTGGGGGAACGTAGCATGGGAAACCAAAA